RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.36□□□□□ -0.43
VPS53-216ENST00000574029 HIST1H2BHQ93079 126 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 HIST1H2BNQ99877 126 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 HIST1H2BMQ99879 126 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 RPL37AP8A6NKH3 93 aa12.35□□□□□ -0.43
VPS53-216ENST00000574029 KRTAP9-6A0A140TA67 174 aa12.34□□□□□ -0.43
VPS53-216ENST00000574029 IGLV5-37A0A075B6J1 123 aa12.33□□□□□ -0.44
VPS53-216ENST00000574029 KRTAP13-1Q8IUC0 172 aa12.33□□□□□ -0.44
VPS53-216ENST00000574029 HSPB8Q9UJY1 196 aa12.33□□□□□ -0.44
VPS53-216ENST00000574029 TMEM170BQ5T4T1 132 aa12.32□□□□□ -0.44
VPS53-216ENST00000574029 ANAPC11Q9NYG5 84 aa12.32□□□□□ -0.44
VPS53-216ENST00000574029 GAGE10A6NGK3 116 aa12.31□□□□□ -0.44
VPS53-216ENST00000574029 KRTAP13-2Q52LG2 175 aa12.31□□□□□ -0.44
VPS53-216ENST00000574029 TMEM223A0PJW6 202 aa12.28□□□□□ -0.44
VPS53-216ENST00000574029 ATP6V1G1O75348 118 aa12.28□□□□□ -0.44
VPS53-216ENST00000574029 FABP4P15090 132 aa12.28□□□□□ -0.44
VPS53-216ENST00000574029 FAM229BQ4G0N7 80 aa12.28□□□□□ -0.44
VPS53-216ENST00000574029 UBE2AP49459 152 aa12.27□□□□□ -0.45
VPS53-216ENST00000574029 NKAPP1Q8N9T2 125 aa12.27□□□□□ -0.45
VPS53-216ENST00000574029 COA6Q5JTJ3 125 aaKnown RBP12.26□□□□□ -0.45
VPS53-216ENST00000574029 LCE2AQ5TA79 106 aaPredicted RBP12.26□□□□□ -0.45
VPS53-216ENST00000574029 SFTA2Q6UW10 78 aa12.25□□□□□ -0.45
VPS53-216ENST00000574029 H0Y8G0 127 aa12.24□□□□□ -0.45
VPS53-216ENST00000574029 FAT4Q6V0I7 4981 aa12.24□□□□□ -0.45
VPS53-216ENST00000574029 LINC00304Q8N9R0 145 aa12.24□□□□□ -0.45
VPS53-216ENST00000574029 RETNLBQ9BQ08 111 aa12.24□□□□□ -0.45
VPS53-216ENST00000574029 MAP1LC3CQ9BXW4 147 aa12.23□□□□□ -0.45
VPS53-216ENST00000574029 IGKV2-28A0A075B6P5 120 aa12.22□□□□□ -0.45
VPS53-216ENST00000574029 IGKV2D-28P01615 120 aa12.22□□□□□ -0.45
VPS53-216ENST00000574029 PLNP26678 52 aa12.22□□□□□ -0.45
VPS53-216ENST00000574029 ZNF625Q96I27 306 aaPredicted RBP12.22□□□□□ -0.45
VPS53-216ENST00000574029 COX17Q14061 63 aa12.21□□□□□ -0.45
VPS53-216ENST00000574029 IGKV2D-26A0A0A0MRZ7 120 aa12.19□□□□□ -0.46
VPS53-216ENST00000574029 DPM2O94777 84 aa12.19□□□□□ -0.46
VPS53-216ENST00000574029 CTAG1AP78358 180 aa12.19□□□□□ -0.46
VPS53-216ENST00000574029 PRLHP81277 87 aa12.19□□□□□ -0.46
VPS53-216ENST00000574029 TPRXLQ17RH7 258 aa12.19□□□□□ -0.46
VPS53-216ENST00000574029 ERG28Q9UKR5 140 aa12.19□□□□□ -0.46
VPS53-216ENST00000574029 SYS1-DBNDD2H3BUS1 97 aa12.17□□□□□ -0.46
VPS53-216ENST00000574029 IGKCP01834 107 aa12.17□□□□□ -0.46
VPS53-216ENST00000574029 VPREB1P12018 145 aa12.17□□□□□ -0.46
VPS53-216ENST00000574029 PFN2P35080 140 aa12.17□□□□□ -0.46
VPS53-216ENST00000574029 PMCHL2Q9BQD1 86 aa12.16□□□□□ -0.46
VPS53-216ENST00000574029 TMEM126AQ9H061 195 aa12.16□□□□□ -0.46
VPS53-216ENST00000574029 CDIP1Q9H305 208 aa12.16□□□□□ -0.46
VPS53-216ENST00000574029 SND1-IT1Q9HBX3 110 aa12.16□□□□□ -0.46
VPS53-216ENST00000574029 IGLV7-46A0A075B6I9 117 aa12.15□□□□□ -0.46
VPS53-216ENST00000574029 TMEM238C9JI98 176 aa12.15□□□□□ -0.46
VPS53-216ENST00000574029 FAM19A1Q7Z5A9 133 aa12.15□□□□□ -0.46
VPS53-216ENST00000574029 LEPROTO15243 131 aa12.14□□□□□ -0.47
VPS53-216ENST00000574029 M0R378 163 aa12.13□□□□□ -0.47
VPS53-216ENST00000574029 HERV-K104P63124 156 aa12.13□□□□□ -0.47
VPS53-216ENST00000574029 PET117Q6UWS5 81 aa12.13□□□□□ -0.47
VPS53-216ENST00000574029 PLEKHB2Q96CS7 222 aa12.13□□□□□ -0.47
VPS53-216ENST00000574029 MUC17Q685J3 4493 aa12.12□□□□□ -0.47
VPS53-216ENST00000574029 HERVK_113P61574 105 aa12.12□□□□□ -0.47
VPS53-216ENST00000574029 RPL24P83731 157 aaKnown RBP12.12□□□□□ -0.47
VPS53-216ENST00000574029 LINC01545Q5VT33 79 aa12.12□□□□□ -0.47
VPS53-216ENST00000574029 NDUFA12Q9UI09 145 aa12.11□□□□□ -0.47
VPS53-216ENST00000574029 MYMXA0A1B0GTQ4 84 aa12.1□□□□□ -0.47
VPS53-216ENST00000574029 C3orf79P0CE67 100 aa12.1□□□□□ -0.47
VPS53-216ENST00000574029 Q8NDZ9 215 aa12.1□□□□□ -0.47
VPS53-216ENST00000574029 LINC00587B1AMM8 73 aa12.09□□□□□ -0.47
VPS53-216ENST00000574029 TSPEAR-AS2P59090 65 aa12.09□□□□□ -0.47
VPS53-216ENST00000574029 C3orf22Q8N5N4 141 aa12.09□□□□□ -0.47
VPS53-216ENST00000574029 J3QQQ9 107 aa12.08□□□□□ -0.48
VPS53-216ENST00000574029 LINC00158P58513 81 aa12.08□□□□□ -0.48
VPS53-216ENST00000574029 NMUP48645 174 aa12.07□□□□□ -0.48
VPS53-216ENST00000574029 E9PLD3 99 aa12.06□□□□□ -0.48
VPS53-216ENST00000574029 SMIM13P0DJ93 91 aa12.06□□□□□ -0.48
VPS53-216ENST00000574029 PPDPFQ9H3Y8 114 aa12.06□□□□□ -0.48
VPS53-216ENST00000574029 KRTDAPP60985 99 aa12.04□□□□□ -0.48
VPS53-216ENST00000574029 MEIG1Q5JSS6 88 aa12.04□□□□□ -0.48
VPS53-216ENST00000574029 SPAG11AQ6PDA7 123 aa12.04□□□□□ -0.48
VPS53-216ENST00000574029 HIGD2AQ9BW72 106 aa12.04□□□□□ -0.48
VPS53-216ENST00000574029 A0A0U1RRA0 63 aa12.03□□□□□ -0.48
VPS53-216ENST00000574029 LGALS3P17931 250 aaKnown RBP12.03□□□□□ -0.48
VPS53-216ENST00000574029 HIST3H2BBQ8N257 126 aa12.02□□□□□ -0.49
VPS53-216ENST00000574029 SPRR4Q96PI1 79 aa12.02□□□□□ -0.49
VPS53-216ENST00000574029 MIR7-3HGQ8N6C7 128 aa12.01□□□□□ -0.49
VPS53-216ENST00000574029 LOC107984156A0A0G2JMH3 177 aa11.99□□□□□ -0.49
VPS53-216ENST00000574029 C20orf202A1L168 122 aa11.99□□□□□ -0.49
VPS53-216ENST00000574029 FP248Q71RG6 208 aaPredicted RBP11.99□□□□□ -0.49
VPS53-216ENST00000574029 ARL17AQ8IVW1 177 aa11.99□□□□□ -0.49
VPS53-216ENST00000574029 S100A6P06703 90 aa11.98□□□□□ -0.49
VPS53-216ENST00000574029 AKR1D1P51857 326 aa11.98□□□□□ -0.49
VPS53-216ENST00000574029 HIST1H2BLQ99880 126 aa11.98□□□□□ -0.49
VPS53-216ENST00000574029 ZNF706Q9Y5V0 76 aaPredicted RBP11.97□□□□□ -0.49
VPS53-216ENST00000574029 S100A2P29034 98 aa11.96□□□□□ -0.49
VPS53-216ENST00000574029 A0A0J9YXY3 114 aa11.95□□□□□ -0.5
VPS53-216ENST00000574029 C4orf48Q5BLP8 95 aa11.95□□□□□ -0.5
VPS53-216ENST00000574029 BOD1L2Q8IYS8 172 aa11.94□□□□□ -0.5
VPS53-216ENST00000574029 PRYO14603 147 aa11.93□□□□□ -0.5
VPS53-216ENST00000574029 KRTAP13-3Q3SY46 172 aa11.93□□□□□ -0.5
VPS53-216ENST00000574029 SPRR1AP35321 89 aa11.92□□□□□ -0.5
VPS53-216ENST00000574029 SNRPEP62304 92 aaKnown RBP11.92□□□□□ -0.5
VPS53-216ENST00000574029 DAND5Q8N907 189 aa11.92□□□□□ -0.5
VPS53-216ENST00000574029 Q8NBF4 154 aa11.92□□□□□ -0.5
VPS53-216ENST00000574029 C5orf52A6NGY3 159 aa11.91□□□□□ -0.5
VPS53-216ENST00000574029 LINC00337Q8N6G1 96 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms