RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 Q8NDZ9 215 aa12.1□□□□□ -0.47
CLK3-225ENST00000569063 H0Y8G0 127 aa12.08□□□□□ -0.48
CLK3-225ENST00000569063 HSPB8Q9UJY1 196 aa12.08□□□□□ -0.48
CLK3-225ENST00000569063 UBE2AP49459 152 aa12.07□□□□□ -0.48
CLK3-225ENST00000569063 HERV-K104P63124 156 aa12.07□□□□□ -0.48
CLK3-225ENST00000569063 PLNP26678 52 aa12.06□□□□□ -0.48
CLK3-225ENST00000569063 A0A0U1RRA0 63 aa12.05□□□□□ -0.48
CLK3-225ENST00000569063 SMIM13P0DJ93 91 aa12.05□□□□□ -0.48
CLK3-225ENST00000569063 TMEM126AQ9H061 195 aa12.05□□□□□ -0.48
CLK3-225ENST00000569063 LINC00587B1AMM8 73 aa12.04□□□□□ -0.48
CLK3-225ENST00000569063 FABP4P15090 132 aa12.04□□□□□ -0.48
CLK3-225ENST00000569063 NDUFA12Q9UI09 145 aa12.04□□□□□ -0.48
CLK3-225ENST00000569063 LRP2P98164 4655 aa12.04□□□□□ -0.48
CLK3-225ENST00000569063 MYMXA0A1B0GTQ4 84 aa12.03□□□□□ -0.48
CLK3-225ENST00000569063 TMEM238C9JI98 176 aa12.03□□□□□ -0.48
CLK3-225ENST00000569063 MEIG1Q5JSS6 88 aa12.03□□□□□ -0.48
CLK3-225ENST00000569063 A0A087X002 238 aa12.02□□□□□ -0.49
CLK3-225ENST00000569063 M0R378 163 aa12.02□□□□□ -0.49
CLK3-225ENST00000569063 ATP6V1G1O75348 118 aa12.02□□□□□ -0.49
CLK3-225ENST00000569063 LEPROTO15243 131 aa12.01□□□□□ -0.49
CLK3-225ENST00000569063 DPM2O94777 84 aa12.01□□□□□ -0.49
CLK3-225ENST00000569063 CRYGAP11844 174 aa12.01□□□□□ -0.49
CLK3-225ENST00000569063 FAM19A1Q7Z5A9 133 aa12.01□□□□□ -0.49
CLK3-225ENST00000569063 MIR7-3HGQ8N6C7 128 aa12.01□□□□□ -0.49
CLK3-225ENST00000569063 TSPEAR-AS2P59090 65 aa12□□□□□ -0.49
CLK3-225ENST00000569063 PLEKHB2Q96CS7 222 aa12□□□□□ -0.49
CLK3-225ENST00000569063 IGKCP01834 107 aa11.99□□□□□ -0.49
CLK3-225ENST00000569063 PRLHP81277 87 aa11.99□□□□□ -0.49
CLK3-225ENST00000569063 MAP1LC3CQ9BXW4 147 aa11.99□□□□□ -0.49
CLK3-225ENST00000569063 BOD1L2Q8IYS8 172 aa11.98□□□□□ -0.49
CLK3-225ENST00000569063 PMCHL2Q9BQD1 86 aa11.98□□□□□ -0.49
CLK3-225ENST00000569063 J3QQQ9 107 aa11.97□□□□□ -0.49
CLK3-225ENST00000569063 HERVK_113P61574 105 aa11.97□□□□□ -0.49
CLK3-225ENST00000569063 FAM229BQ4G0N7 80 aa11.97□□□□□ -0.49
CLK3-225ENST00000569063 ANAPC11Q9NYG5 84 aa11.97□□□□□ -0.49
CLK3-225ENST00000569063 HIST1H2BKO60814 126 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 HIST1H2BJP06899 126 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 HIST1H2BOP23527 126 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 HIST1H2BBP33778 126 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 HIST1H2BDP58876 126 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 HIST1H2BCP62807 126 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 HIST2H2BEQ16778 126 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.96□□□□□ -0.49
CLK3-225ENST00000569063 TYMSOSQ8TAI1 123 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 HIST1H2BHQ93079 126 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 HIST1H2BNQ99877 126 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 HIST1H2BMQ99879 126 aa11.96□□□□□ -0.49
CLK3-225ENST00000569063 IGKV2D-26A0A0A0MRZ7 120 aa11.95□□□□□ -0.5
CLK3-225ENST00000569063 NMUP48645 174 aa11.95□□□□□ -0.5
CLK3-225ENST00000569063 LOC107984156A0A0G2JMH3 177 aa11.94□□□□□ -0.5
CLK3-225ENST00000569063 ARL17AQ8IVW1 177 aa11.94□□□□□ -0.5
CLK3-225ENST00000569063 KRTAP13-2Q52LG2 175 aa11.93□□□□□ -0.5
CLK3-225ENST00000569063 NCR3O14931 201 aa11.92□□□□□ -0.5
CLK3-225ENST00000569063 LGALS3P17931 250 aaKnown RBP11.92□□□□□ -0.5
CLK3-225ENST00000569063 KCNQ1DNQ9H478 68 aa11.92□□□□□ -0.5
CLK3-225ENST00000569063 PRYO14603 147 aa11.91□□□□□ -0.5
CLK3-225ENST00000569063 SYS1-DBNDD2H3BUS1 97 aa11.9□□□□□ -0.5
CLK3-225ENST00000569063 SPRR1AP35321 89 aa11.9□□□□□ -0.5
CLK3-225ENST00000569063 DAND5Q8N907 189 aa11.9□□□□□ -0.5
CLK3-225ENST00000569063 E9PLD3 99 aa11.89□□□□□ -0.51
CLK3-225ENST00000569063 HIGD2AQ9BW72 106 aa11.89□□□□□ -0.51
CLK3-225ENST00000569063 TSPAN13O95857 204 aa11.88□□□□□ -0.51
CLK3-225ENST00000569063 LINC00337Q8N6G1 96 aa11.88□□□□□ -0.51
CLK3-225ENST00000569063 TRBV10-3A0A0K0K1G6 114 aa11.87□□□□□ -0.51
CLK3-225ENST00000569063 TRBV10-2A0A0K0K1G8 114 aa11.86□□□□□ -0.51
CLK3-225ENST00000569063 KRTAP4-16G5E9R7 235 aaPredicted RBP11.86□□□□□ -0.51
CLK3-225ENST00000569063 PRR4Q16378 134 aa11.86□□□□□ -0.51
CLK3-225ENST00000569063 LPAP08519 4548 aa11.86□□□□□ -0.51
CLK3-225ENST00000569063 LINC01545Q5VT33 79 aa11.85□□□□□ -0.51
CLK3-225ENST00000569063 A0A0J9YXY3 114 aa11.84□□□□□ -0.51
CLK3-225ENST00000569063 PET117Q6UWS5 81 aa11.84□□□□□ -0.51
CLK3-225ENST00000569063 MIEN1Q9BRT3 115 aa11.84□□□□□ -0.51
CLK3-225ENST00000569063 NDUFC2O95298 119 aa11.83□□□□□ -0.52
CLK3-225ENST00000569063 S100A12P80511 92 aa11.83□□□□□ -0.52
CLK3-225ENST00000569063 COA6Q5JTJ3 125 aaKnown RBP11.83□□□□□ -0.52
CLK3-225ENST00000569063 SPRR4Q96PI1 79 aa11.83□□□□□ -0.52
CLK3-225ENST00000569063 SPANXB1Q9NS25 103 aaPredicted RBP11.83□□□□□ -0.52
CLK3-225ENST00000569063 ETDCA0A1B0GVM5 59 aa11.82□□□□□ -0.52
CLK3-225ENST00000569063 LINC00304Q8N9R0 145 aa11.82□□□□□ -0.52
CLK3-225ENST00000569063 DDTP30046 118 aa11.81□□□□□ -0.52
CLK3-225ENST00000569063 ADAMTSL4-AS1Q5T5F5 129 aa11.81□□□□□ -0.52
CLK3-225ENST00000569063 ZNF706Q9Y5V0 76 aaPredicted RBP11.81□□□□□ -0.52
CLK3-225ENST00000569063 CTAG1AP78358 180 aa11.8□□□□□ -0.52
CLK3-225ENST00000569063 RNF213Q63HN8 5207 aa11.79□□□□□ -0.52
CLK3-225ENST00000569063 SOSTDC1Q6X4U4 206 aa11.79□□□□□ -0.52
CLK3-225ENST00000569063 SMCR5Q8TEV8 140 aa11.79□□□□□ -0.52
CLK3-225ENST00000569063 B5MCH6 92 aa11.78□□□□□ -0.52
CLK3-225ENST00000569063 EIF4EBP3O60516 100 aaPredicted RBP11.78□□□□□ -0.52
CLK3-225ENST00000569063 C3orf79P0CE67 100 aa11.78□□□□□ -0.52
CLK3-225ENST00000569063 C3orf22Q8N5N4 141 aa11.78□□□□□ -0.52
CLK3-225ENST00000569063 IGLV6-57P01721 117 aa11.77□□□□□ -0.53
CLK3-225ENST00000569063 S100A7L2Q5SY68 101 aa11.76□□□□□ -0.53
CLK3-225ENST00000569063 TIMM17BO60830 172 aa11.75□□□□□ -0.53
CLK3-225ENST00000569063 NPC2P61916 151 aa11.75□□□□□ -0.53
CLK3-225ENST00000569063 LITAFQ99732 161 aa11.75□□□□□ -0.53
CLK3-225ENST00000569063 KRTDAPP60985 99 aa11.73□□□□□ -0.53
CLK3-225ENST00000569063 Q6ZRX8 168 aa11.73□□□□□ -0.53
CLK3-225ENST00000569063 LINC00483Q53H64 154 aa11.72□□□□□ -0.53
CLK3-225ENST00000569063 TRAV23DV6A0A075B6W5 121 aa11.71□□□□□ -0.53
CLK3-225ENST00000569063 ZNF815PA8K554 130 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 138 ms