RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 HIST1H2BJP06899 126 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 FABP4P15090 132 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 HIST1H2BOP23527 126 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 HIST1H2BBP33778 126 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 HIST1H2BDP58876 126 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 HIST1H2BCP62807 126 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 HIST2H2BEQ16778 126 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 KRTAP13-2Q52LG2 175 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.73□□□□□ -1.01
CLN3-236ENST00000568558 NKAPP1Q8N9T2 125 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 HIST1H2BHQ93079 126 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 HIST1H2BNQ99877 126 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 HIST1H2BMQ99879 126 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 ANAPC11Q9NYG5 84 aa8.73□□□□□ -1.01
CLN3-236ENST00000568558 TMEM223A0PJW6 202 aa8.72□□□□□ -1.01
CLN3-236ENST00000568558 UBE2AP49459 152 aa8.72□□□□□ -1.01
CLN3-236ENST00000568558 FAM229BQ4G0N7 80 aa8.71□□□□□ -1.02
CLN3-236ENST00000568558 ZNF625Q96I27 306 aaPredicted RBP8.7□□□□□ -1.02
CLN3-236ENST00000568558 FAT4Q6V0I7 4981 aa8.7□□□□□ -1.02
CLN3-236ENST00000568558 IGKV2-28A0A075B6P5 120 aa8.69□□□□□ -1.02
CLN3-236ENST00000568558 IGKV2D-28P01615 120 aa8.69□□□□□ -1.02
CLN3-236ENST00000568558 HSPB8Q9UJY1 196 aa8.69□□□□□ -1.02
CLN3-236ENST00000568558 PFN2P35080 140 aa8.68□□□□□ -1.02
CLN3-236ENST00000568558 LINC00304Q8N9R0 145 aa8.68□□□□□ -1.02
CLN3-236ENST00000568558 RETNLBQ9BQ08 111 aa8.68□□□□□ -1.02
CLN3-236ENST00000568558 PMCHL2Q9BQD1 86 aa8.68□□□□□ -1.02
CLN3-236ENST00000568558 ERG28Q9UKR5 140 aa8.68□□□□□ -1.02
CLN3-236ENST00000568558 PRLHP81277 87 aa8.66□□□□□ -1.02
CLN3-236ENST00000568558 VPREB1P12018 145 aa8.65□□□□□ -1.02
CLN3-236ENST00000568558 TSPEAR-AS2P59090 65 aa8.65□□□□□ -1.02
CLN3-236ENST00000568558 TMEM126AQ9H061 195 aa8.65□□□□□ -1.02
CLN3-236ENST00000568558 SND1-IT1Q9HBX3 110 aa8.65□□□□□ -1.02
CLN3-236ENST00000568558 IGKV2D-26A0A0A0MRZ7 120 aa8.64□□□□□ -1.03
CLN3-236ENST00000568558 TMEM238C9JI98 176 aa8.64□□□□□ -1.03
CLN3-236ENST00000568558 ATP6V1G1O75348 118 aa8.64□□□□□ -1.03
CLN3-236ENST00000568558 LCE2AQ5TA79 106 aaPredicted RBP8.64□□□□□ -1.03
CLN3-236ENST00000568558 FAM19A1Q7Z5A9 133 aa8.64□□□□□ -1.03
CLN3-236ENST00000568558 DPM2O94777 84 aa8.63□□□□□ -1.03
CLN3-236ENST00000568558 PLNP26678 52 aa8.63□□□□□ -1.03
CLN3-236ENST00000568558 TPRXLQ17RH7 258 aa8.63□□□□□ -1.03
CLN3-236ENST00000568558 Q8NDZ9 215 aa8.63□□□□□ -1.03
CLN3-236ENST00000568558 MAP1LC3CQ9BXW4 147 aa8.63□□□□□ -1.03
CLN3-236ENST00000568558 KRTAP9-2Q9BYQ4 174 aa8.63□□□□□ -1.03
CLN3-236ENST00000568558 A0A0U1RRA0 63 aa8.62□□□□□ -1.03
CLN3-236ENST00000568558 M0R378 163 aa8.62□□□□□ -1.03
CLN3-236ENST00000568558 CTAG1AP78358 180 aa8.62□□□□□ -1.03
CLN3-236ENST00000568558 RPL24P83731 157 aaKnown RBP8.62□□□□□ -1.03
CLN3-236ENST00000568558 COX17Q14061 63 aa8.62□□□□□ -1.03
CLN3-236ENST00000568558 COA6Q5JTJ3 125 aaKnown RBP8.62□□□□□ -1.03
CLN3-236ENST00000568558 SYS1-DBNDD2H3BUS1 97 aa8.61□□□□□ -1.03
CLN3-236ENST00000568558 IGKCP01834 107 aa8.61□□□□□ -1.03
CLN3-236ENST00000568558 SFTA2Q6UW10 78 aa8.61□□□□□ -1.03
CLN3-236ENST00000568558 CDIP1Q9H305 208 aa8.61□□□□□ -1.03
CLN3-236ENST00000568558 IGLV7-46A0A075B6I9 117 aa8.6□□□□□ -1.03
CLN3-236ENST00000568558 SMIM13P0DJ93 91 aa8.6□□□□□ -1.03
CLN3-236ENST00000568558 S100A1P23297 94 aa8.6□□□□□ -1.03
CLN3-236ENST00000568558 LINC00158P58513 81 aa8.6□□□□□ -1.03
CLN3-236ENST00000568558 PLEKHB2Q96CS7 222 aa8.6□□□□□ -1.03
CLN3-236ENST00000568558 NDUFA12Q9UI09 145 aa8.6□□□□□ -1.03
CLN3-236ENST00000568558 LEPROTO15243 131 aa8.59□□□□□ -1.03
CLN3-236ENST00000568558 C3orf22Q8N5N4 141 aa8.59□□□□□ -1.03
CLN3-236ENST00000568558 J3QQQ9 107 aa8.57□□□□□ -1.04
CLN3-236ENST00000568558 C3orf79P0CE67 100 aa8.57□□□□□ -1.04
CLN3-236ENST00000568558 HIGD2AQ9BW72 106 aa8.57□□□□□ -1.04
CLN3-236ENST00000568558 MYMXA0A1B0GTQ4 84 aa8.56□□□□□ -1.04
CLN3-236ENST00000568558 HERVK_113P61574 105 aa8.56□□□□□ -1.04
CLN3-236ENST00000568558 HERV-K104P63124 156 aa8.56□□□□□ -1.04
CLN3-236ENST00000568558 MEIG1Q5JSS6 88 aa8.56□□□□□ -1.04
CLN3-236ENST00000568558 LINC01545Q5VT33 79 aa8.56□□□□□ -1.04
CLN3-236ENST00000568558 MIR7-3HGQ8N6C7 128 aa8.55□□□□□ -1.04
CLN3-236ENST00000568558 KRTDAPP60985 99 aa8.54□□□□□ -1.04
CLN3-236ENST00000568558 PET117Q6UWS5 81 aa8.54□□□□□ -1.04
CLN3-236ENST00000568558 SPRR4Q96PI1 79 aa8.54□□□□□ -1.04
CLN3-236ENST00000568558 PPDPFQ9H3Y8 114 aa8.54□□□□□ -1.04
CLN3-236ENST00000568558 E9PLD3 99 aa8.53□□□□□ -1.04
CLN3-236ENST00000568558 LGALS3P17931 250 aaKnown RBP8.53□□□□□ -1.04
CLN3-236ENST00000568558 SPAG11AQ6PDA7 123 aa8.53□□□□□ -1.04
CLN3-236ENST00000568558 DAND5Q8N907 189 aa8.53□□□□□ -1.04
CLN3-236ENST00000568558 NMUP48645 174 aa8.51□□□□□ -1.05
CLN3-236ENST00000568558 BOD1L2Q8IYS8 172 aa8.51□□□□□ -1.05
CLN3-236ENST00000568558 ZNF706Q9Y5V0 76 aaPredicted RBP8.5□□□□□ -1.05
CLN3-236ENST00000568558 LINC00587B1AMM8 73 aa8.49□□□□□ -1.05
CLN3-236ENST00000568558 NCR3O14931 201 aa8.49□□□□□ -1.05
CLN3-236ENST00000568558 FP248Q71RG6 208 aaPredicted RBP8.49□□□□□ -1.05
CLN3-236ENST00000568558 A0A0J9YXY3 114 aa8.48□□□□□ -1.05
CLN3-236ENST00000568558 PRYO14603 147 aa8.48□□□□□ -1.05
CLN3-236ENST00000568558 ADAMTSL4-AS1Q5T5F5 129 aa8.48□□□□□ -1.05
CLN3-236ENST00000568558 HIST3H2BBQ8N257 126 aa8.48□□□□□ -1.05
CLN3-236ENST00000568558 TTTY13Q9BZ97 58 aa8.48□□□□□ -1.05
CLN3-236ENST00000568558 EIF4EBP3O60516 100 aaPredicted RBP8.47□□□□□ -1.05
CLN3-236ENST00000568558 SPRR1AP35321 89 aa8.47□□□□□ -1.05
CLN3-236ENST00000568558 C4orf48Q5BLP8 95 aa8.47□□□□□ -1.05
CLN3-236ENST00000568558 ATOH7Q8N100 152 aa8.47□□□□□ -1.05
CLN3-236ENST00000568558 LINC00337Q8N6G1 96 aa8.47□□□□□ -1.05
CLN3-236ENST00000568558 SOSTDC1Q6X4U4 206 aa8.46□□□□□ -1.06
CLN3-236ENST00000568558 Q8NBF4 154 aa8.46□□□□□ -1.06
CLN3-236ENST00000568558 HIST1H2BLQ99880 126 aa8.46□□□□□ -1.06
CLN3-236ENST00000568558 LOC107984156A0A0G2JMH3 177 aa8.45□□□□□ -1.06
CLN3-236ENST00000568558 KRTAP4-16G5E9R7 235 aaPredicted RBP8.45□□□□□ -1.06
CLN3-236ENST00000568558 NPC2P61916 151 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms