RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 A0A0U1RRA0 63 aa10.77□□□□□ -0.69
CLN3-217ENST00000565354 M0QXV9 152 aa10.77□□□□□ -0.69
CLN3-217ENST00000565354 AKR1D1P51857 326 aa10.77□□□□□ -0.69
CLN3-217ENST00000565354 SNRPEP62304 92 aaKnown RBP10.77□□□□□ -0.69
CLN3-217ENST00000565354 HIST1H2BLQ99880 126 aa10.77□□□□□ -0.69
CLN3-217ENST00000565354 LINC00587B1AMM8 73 aa10.76□□□□□ -0.69
CLN3-217ENST00000565354 E9PLD3 99 aa10.76□□□□□ -0.69
CLN3-217ENST00000565354 TSPEAR-AS2P59090 65 aa10.76□□□□□ -0.69
CLN3-217ENST00000565354 UBE2BP63146 152 aa10.76□□□□□ -0.69
CLN3-217ENST00000565354 NMUP48645 174 aa10.75□□□□□ -0.69
CLN3-217ENST00000565354 SMIM13P0DJ93 91 aa10.74□□□□□ -0.69
CLN3-217ENST00000565354 RNF213Q63HN8 5207 aa10.73□□□□□ -0.69
CLN3-217ENST00000565354 HNRNPA3P51991 378 aaKnown RBP10.73□□□□□ -0.69
CLN3-217ENST00000565354 SND1-IT1Q9HBX3 110 aa10.73□□□□□ -0.69
CLN3-217ENST00000565354 LBHQ53QV2 105 aaPredicted RBP10.72□□□□□ -0.69
CLN3-217ENST00000565354 ATOH7Q8N100 152 aa10.72□□□□□ -0.69
CLN3-217ENST00000565354 NKAPP1Q8N9T2 125 aa10.72□□□□□ -0.69
CLN3-217ENST00000565354 C22orf24Q9Y442 160 aa10.72□□□□□ -0.69
CLN3-217ENST00000565354 C5orf52A6NGY3 159 aa10.71□□□□□ -0.69
CLN3-217ENST00000565354 MT1HL1P0DM35 61 aa10.71□□□□□ -0.69
CLN3-217ENST00000565354 PRR3P79522 188 aaKnown RBP10.71□□□□□ -0.69
CLN3-217ENST00000565354 LRP2P98164 4655 aa10.71□□□□□ -0.69
CLN3-217ENST00000565354 RPL24P83731 157 aaKnown RBP10.7□□□□□ -0.7
CLN3-217ENST00000565354 KRTAP7-1Q8IUC3 87 aa10.7□□□□□ -0.7
CLN3-217ENST00000565354 MRPL55Q7Z7F7 128 aaKnown RBP10.69□□□□□ -0.7
CLN3-217ENST00000565354 MIR7-3HGQ8N6C7 128 aa10.69□□□□□ -0.7
CLN3-217ENST00000565354 TP73-AS1Q9UF72 201 aa10.69□□□□□ -0.7
CLN3-217ENST00000565354 TNXBP22105 4242 aa10.69□□□□□ -0.7
CLN3-217ENST00000565354 C1orf137Q5JT78 98 aa10.68□□□□□ -0.7
CLN3-217ENST00000565354 PSORS1C2Q9UIG4 136 aa10.68□□□□□ -0.7
CLN3-217ENST00000565354 GAGE10A6NGK3 116 aa10.66□□□□□ -0.7
CLN3-217ENST00000565354 ZNF815PA8K554 130 aa10.66□□□□□ -0.7
CLN3-217ENST00000565354 HSBP1L1C9JCN9 74 aa10.66□□□□□ -0.7
CLN3-217ENST00000565354 IGLV5-37A0A075B6J1 123 aa10.65□□□□□ -0.7
CLN3-217ENST00000565354 IGKV2D-26A0A0A0MRZ7 120 aa10.65□□□□□ -0.7
CLN3-217ENST00000565354 A0A0J9YXY3 114 aa10.65□□□□□ -0.7
CLN3-217ENST00000565354 SCGB1D1O95968 90 aa10.65□□□□□ -0.7
CLN3-217ENST00000565354 MIEN1Q9BRT3 115 aa10.65□□□□□ -0.7
CLN3-217ENST00000565354 VPREB1P12018 145 aa10.64□□□□□ -0.71
CLN3-217ENST00000565354 ANKRD39Q53RE8 183 aa10.64□□□□□ -0.71
CLN3-217ENST00000565354 BOD1L2Q8IYS8 172 aa10.64□□□□□ -0.71
CLN3-217ENST00000565354 DAND5Q8N907 189 aa10.64□□□□□ -0.71
CLN3-217ENST00000565354 LINC00167Q96N53 147 aa10.64□□□□□ -0.71
CLN3-217ENST00000565354 TMA7Q9Y2S6 64 aaKnown RBP10.64□□□□□ -0.71
CLN3-217ENST00000565354 RPL37AP8A6NKH3 93 aa10.62□□□□□ -0.71
CLN3-217ENST00000565354 TTTY13Q9BZ97 58 aa10.62□□□□□ -0.71
CLN3-217ENST00000565354 SCGB1D4Q6XE38 83 aa10.61□□□□□ -0.71
CLN3-217ENST00000565354 KRTAP11-1Q8IUC1 163 aa10.61□□□□□ -0.71
CLN3-217ENST00000565354 IGKV2-28A0A075B6P5 120 aa10.59□□□□□ -0.71
CLN3-217ENST00000565354 IGKV2D-28P01615 120 aa10.59□□□□□ -0.71
CLN3-217ENST00000565354 IGLV7-43P04211 117 aa10.59□□□□□ -0.71
CLN3-217ENST00000565354 NPC2P61916 151 aa10.59□□□□□ -0.71
CLN3-217ENST00000565354 SPINK6Q6UWN8 80 aa10.59□□□□□ -0.71
CLN3-217ENST00000565354 M0R378 163 aa10.58□□□□□ -0.72
CLN3-217ENST00000565354 NCR3O14931 201 aa10.58□□□□□ -0.72
CLN3-217ENST00000565354 TIMM17BO60830 172 aa10.58□□□□□ -0.72
CLN3-217ENST00000565354 Q8NDZ9 215 aa10.58□□□□□ -0.72
CLN3-217ENST00000565354 ADAMTSL4-AS1Q5T5F5 129 aa10.56□□□□□ -0.72
CLN3-217ENST00000565354 TMEM238C9JI98 176 aa10.55□□□□□ -0.72
CLN3-217ENST00000565354 PCP2Q8IVA1 136 aa10.55□□□□□ -0.72
CLN3-217ENST00000565354 IGLV1-50A0A075B6I6 118 aa10.54□□□□□ -0.72
CLN3-217ENST00000565354 LOC107984156A0A0G2JMH3 177 aa10.54□□□□□ -0.72
CLN3-217ENST00000565354 SRSF9Q13242 221 aaKnown RBP eCLIP10.54□□□□□ -0.72
CLN3-217ENST00000565354 ARL17AQ8IVW1 177 aa10.54□□□□□ -0.72
CLN3-217ENST00000565354 BCE1O60756 84 aa10.53□□□□□ -0.72
CLN3-217ENST00000565354 S100A12P80511 92 aa10.53□□□□□ -0.72
CLN3-217ENST00000565354 REG3GQ6UW15 175 aa10.53□□□□□ -0.72
CLN3-217ENST00000565354 DIRC1Q969H9 104 aa10.53□□□□□ -0.72
CLN3-217ENST00000565354 LITAFQ99732 161 aa10.53□□□□□ -0.72
CLN3-217ENST00000565354 NDUFC2O95298 119 aa10.52□□□□□ -0.73
CLN3-217ENST00000565354 UBE2AP49459 152 aa10.52□□□□□ -0.73
CLN3-217ENST00000565354 LINC00308Q8TCZ7 52 aa10.52□□□□□ -0.73
CLN3-217ENST00000565354 SPANXB1Q9NS25 103 aaPredicted RBP10.52□□□□□ -0.73
CLN3-217ENST00000565354 RPL28P46779 137 aaKnown RBP10.51□□□□□ -0.73
CLN3-217ENST00000565354 SOSTDC1Q6X4U4 206 aa10.51□□□□□ -0.73
CLN3-217ENST00000565354 COPS9Q8WXC6 57 aa10.51□□□□□ -0.73
CLN3-217ENST00000565354 TRBV10-2A0A0K0K1G8 114 aa10.5□□□□□ -0.73
CLN3-217ENST00000565354 ZNF861PO60384 105 aa10.5□□□□□ -0.73
CLN3-217ENST00000565354 S100A7L2Q5SY68 101 aa10.5□□□□□ -0.73
CLN3-217ENST00000565354 SPANXDQ9BXN6 97 aa10.5□□□□□ -0.73
CLN3-217ENST00000565354 TMEM126AQ9H061 195 aa10.5□□□□□ -0.73
CLN3-217ENST00000565354 SPANXCQ9NY87 97 aa10.5□□□□□ -0.73
CLN3-217ENST00000565354 JOSD1Q15040 202 aaPredicted RBP10.49□□□□□ -0.73
CLN3-217ENST00000565354 FAM19A1Q7Z5A9 133 aa10.49□□□□□ -0.73
CLN3-217ENST00000565354 PRYO14603 147 aa10.48□□□□□ -0.73
CLN3-217ENST00000565354 DDTP30046 118 aa10.48□□□□□ -0.73
CLN3-217ENST00000565354 VAMP8Q9BV40 100 aa10.48□□□□□ -0.73
CLN3-217ENST00000565354 TRBV10-3A0A0K0K1G6 114 aa10.47□□□□□ -0.73
CLN3-217ENST00000565354 H0Y9J4 135 aa10.47□□□□□ -0.73
CLN3-217ENST00000565354 EIF4EBP3O60516 100 aaPredicted RBP10.47□□□□□ -0.73
CLN3-217ENST00000565354 IFITM1P13164 125 aa10.47□□□□□ -0.73
CLN3-217ENST00000565354 Q6ZVH6 145 aa10.47□□□□□ -0.73
CLN3-217ENST00000565354 PAM16Q9Y3D7 125 aa10.47□□□□□ -0.73
CLN3-217ENST00000565354 SPATA45Q537H7 98 aa10.46□□□□□ -0.73
CLN3-217ENST00000565354 OR13C6PQ8NH95 151 aa10.45□□□□□ -0.74
CLN3-217ENST00000565354 COX8AP10176 69 aa10.44□□□□□ -0.74
CLN3-217ENST00000565354 PRLHP81277 87 aa10.44□□□□□ -0.74
CLN3-217ENST00000565354 LINC01600Q96MT4 127 aa10.44□□□□□ -0.74
CLN3-217ENST00000565354 ETDCA0A1B0GVM5 59 aa10.43□□□□□ -0.74
CLN3-217ENST00000565354 MUSTN1Q8IVN3 82 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms