RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 HIGD2AQ9BW72 106 aa9.26□□□□□ -0.93
CLN3-208ENST00000561505 SPRR1AP35321 89 aa9.25□□□□□ -0.93
CLN3-208ENST00000561505 FA2HQ7L5A8 372 aa9.25□□□□□ -0.93
CLN3-208ENST00000561505 KRTAP4-16G5E9R7 235 aaPredicted RBP9.24□□□□□ -0.93
CLN3-208ENST00000561505 SPINK1P00995 79 aa9.24□□□□□ -0.93
CLN3-208ENST00000561505 URB1-AS1Q96HZ7 61 aa9.24□□□□□ -0.93
CLN3-208ENST00000561505 LINC00337Q8N6G1 96 aa9.23□□□□□ -0.93
CLN3-208ENST00000561505 ZNF706Q9Y5V0 76 aaPredicted RBP9.23□□□□□ -0.93
CLN3-208ENST00000561505 TMEM218A2RU14 115 aa9.22□□□□□ -0.93
CLN3-208ENST00000561505 C11orf86A6NJI1 115 aa9.22□□□□□ -0.93
CLN3-208ENST00000561505 LINC00483Q53H64 154 aa9.22□□□□□ -0.93
CLN3-208ENST00000561505 CLLU1Q5K131 121 aa9.22□□□□□ -0.93
CLN3-208ENST00000561505 SMCO4Q9NRQ5 59 aa9.22□□□□□ -0.93
CLN3-208ENST00000561505 RPS29P62273 56 aaKnown RBP9.21□□□□□ -0.94
CLN3-208ENST00000561505 C4orf48Q5BLP8 95 aa9.21□□□□□ -0.94
CLN3-208ENST00000561505 Q8NBF4 154 aa9.21□□□□□ -0.94
CLN3-208ENST00000561505 PRYO14603 147 aa9.2□□□□□ -0.94
CLN3-208ENST00000561505 LINC01547P58512 204 aaPredicted RBP9.2□□□□□ -0.94
CLN3-208ENST00000561505 UQCC3Q6UW78 93 aa9.2□□□□□ -0.94
CLN3-208ENST00000561505 DAND5Q8N907 189 aa9.2□□□□□ -0.94
CLN3-208ENST00000561505 KCNQ1DNQ9H478 68 aa9.2□□□□□ -0.94
CLN3-208ENST00000561505 S100PP25815 95 aa9.19□□□□□ -0.94
CLN3-208ENST00000561505 SEC61BP60468 96 aaKnown RBP9.19□□□□□ -0.94
CLN3-208ENST00000561505 LINC00614P0C842 121 aa9.18□□□□□ -0.94
CLN3-208ENST00000561505 FABP9Q0Z7S8 132 aa9.18□□□□□ -0.94
CLN3-208ENST00000561505 SMCR5Q8TEV8 140 aa9.18□□□□□ -0.94
CLN3-208ENST00000561505 HBDP02042 147 aa9.17□□□□□ -0.94
CLN3-208ENST00000561505 NDUFA6P56556 154 aa9.17□□□□□ -0.94
CLN3-208ENST00000561505 LINC00158P58513 81 aa9.17□□□□□ -0.94
CLN3-208ENST00000561505 C18orf32Q8TCD1 76 aa9.17□□□□□ -0.94
CLN3-208ENST00000561505 SEC11CQ9BY50 192 aa9.17□□□□□ -0.94
CLN3-208ENST00000561505 TMEM170BQ5T4T1 132 aa9.16□□□□□ -0.94
CLN3-208ENST00000561505 LCE2CQ5TA81 110 aa9.16□□□□□ -0.94
CLN3-208ENST00000561505 BAGE3Q86Y29 109 aa9.16□□□□□ -0.94
CLN3-208ENST00000561505 XP32Q5T750 250 aa9.15□□□□□ -0.94
CLN3-208ENST00000561505 SSBP3-AS1Q7Z2R9 100 aa9.15□□□□□ -0.94
CLN3-208ENST00000561505 Q8N377 158 aa9.15□□□□□ -0.94
CLN3-208ENST00000561505 TMEM223A0PJW6 202 aa9.14□□□□□ -0.95
CLN3-208ENST00000561505 CRCT1Q9UGL9 99 aa9.14□□□□□ -0.95
CLN3-208ENST00000561505 C10orf91Q5T1B1 145 aa9.13□□□□□ -0.95
CLN3-208ENST00000561505 BOD1L2Q8IYS8 172 aa9.12□□□□□ -0.95
CLN3-208ENST00000561505 LOC107984156A0A0G2JMH3 177 aa9.11□□□□□ -0.95
CLN3-208ENST00000561505 SMIM13P0DJ93 91 aa9.11□□□□□ -0.95
CLN3-208ENST00000561505 PMCHL1Q16048 86 aa9.11□□□□□ -0.95
CLN3-208ENST00000561505 KRTAP19-2Q3LHN2 52 aa9.11□□□□□ -0.95
CLN3-208ENST00000561505 ARL17AQ8IVW1 177 aa9.11□□□□□ -0.95
CLN3-208ENST00000561505 FAM19A2Q8N3H0 131 aa9.11□□□□□ -0.95
CLN3-208ENST00000561505 CHTOPQ9Y3Y2 248 aaKnown RBP9.11□□□□□ -0.95
CLN3-208ENST00000561505 TRAV12-1A0A0B4J245 112 aa9.1□□□□□ -0.95
CLN3-208ENST00000561505 TRBV10-3A0A0K0K1G6 114 aa9.1□□□□□ -0.95
CLN3-208ENST00000561505 A0A0U1RRA0 63 aa9.1□□□□□ -0.95
CLN3-208ENST00000561505 B5MCH6 92 aa9.1□□□□□ -0.95
CLN3-208ENST00000561505 MIR7-3HGQ8N6C7 128 aa9.1□□□□□ -0.95
CLN3-208ENST00000561505 ETDCA0A1B0GVM5 59 aa9.09□□□□□ -0.95
CLN3-208ENST00000561505 ERC2-IT1O76042 136 aa9.09□□□□□ -0.95
CLN3-208ENST00000561505 HERV-K104P63124 156 aa9.09□□□□□ -0.95
CLN3-208ENST00000561505 NDUFA12Q9UI09 145 aa9.09□□□□□ -0.95
CLN3-208ENST00000561505 SLC25A20O43772 301 aa9.08□□□□□ -0.96
CLN3-208ENST00000561505 RHEBQ15382 184 aa9.08□□□□□ -0.96
CLN3-208ENST00000561505 LINC00587B1AMM8 73 aa9.07□□□□□ -0.96
CLN3-208ENST00000561505 NCR3O14931 201 aa9.07□□□□□ -0.96
CLN3-208ENST00000561505 GAGE2AQ6NT46 116 aa9.07□□□□□ -0.96
CLN3-208ENST00000561505 IFITM2Q01629 132 aa9.06□□□□□ -0.96
CLN3-208ENST00000561505 MOBPQ13875 183 aa9.06□□□□□ -0.96
CLN3-208ENST00000561505 Q9BRP9 147 aa9.06□□□□□ -0.96
CLN3-208ENST00000561505 TRAPPC1Q9Y5R8 145 aa9.06□□□□□ -0.96
CLN3-208ENST00000561505 TRBV10-2A0A0K0K1G8 114 aa9.05□□□□□ -0.96
CLN3-208ENST00000561505 ATP6V1G1O75348 118 aa9.04□□□□□ -0.96
CLN3-208ENST00000561505 RPS10P5Q9NQ39 176 aa9.04□□□□□ -0.96
CLN3-208ENST00000561505 MEIG1Q5JSS6 88 aa9.03□□□□□ -0.96
CLN3-208ENST00000561505 Q6ZRX8 168 aa9.03□□□□□ -0.96
CLN3-208ENST00000561505 IGLV9-49A0A0B4J1Y8 123 aa9.02□□□□□ -0.97
CLN3-208ENST00000561505 IFI27L1Q96BM0 104 aa9.02□□□□□ -0.97
CLN3-208ENST00000561505 S100A12P80511 92 aa9.01□□□□□ -0.97
CLN3-208ENST00000561505 CHCHD1Q96BP2 118 aaKnown RBP9.01□□□□□ -0.97
CLN3-208ENST00000561505 MAP1LC3CQ9BXW4 147 aa9.01□□□□□ -0.97
CLN3-208ENST00000561505 MYMXA0A1B0GTQ4 84 aa9□□□□□ -0.97
CLN3-208ENST00000561505 IGLV6-57P01721 117 aa9□□□□□ -0.97
CLN3-208ENST00000561505 DDTP30046 118 aa9□□□□□ -0.97
CLN3-208ENST00000561505 MT1HP80294 61 aa9□□□□□ -0.97
CLN3-208ENST00000561505 FSIP2Q5CZC0 6907 aa8.99□□□□□ -0.97
CLN3-208ENST00000561505 C5orf52A6NGY3 159 aa8.99□□□□□ -0.97
CLN3-208ENST00000561505 NDUFC2O95298 119 aa8.98□□□□□ -0.97
CLN3-208ENST00000561505 TSPEAR-AS2P59090 65 aa8.97□□□□□ -0.97
CLN3-208ENST00000561505 COMMD7Q86VX2 200 aa8.96□□□□□ -0.98
CLN3-208ENST00000561505 SPANXB1Q9NS25 103 aaPredicted RBP8.96□□□□□ -0.98
CLN3-208ENST00000561505 CFC1BP0CG36 223 aa8.95□□□□□ -0.98
CLN3-208ENST00000561505 YPEL4Q96NS1 127 aa8.95□□□□□ -0.98
CLN3-208ENST00000561505 LEPROTO15243 131 aa8.94□□□□□ -0.98
CLN3-208ENST00000561505 SPRR1BP22528 89 aa8.94□□□□□ -0.98
CLN3-208ENST00000561505 LORP23490 312 aaPredicted RBP8.94□□□□□ -0.98
CLN3-208ENST00000561505 JOSD1Q15040 202 aaPredicted RBP8.94□□□□□ -0.98
CLN3-208ENST00000561505 TRAV23DV6A0A075B6W5 121 aa8.9□□□□□ -0.98
CLN3-208ENST00000561505 J3QQQ9 107 aa8.9□□□□□ -0.98
CLN3-208ENST00000561505 ZNF73O43830 326 aaPredicted RBP8.9□□□□□ -0.98
CLN3-208ENST00000561505 NMUP48645 174 aa8.9□□□□□ -0.98
CLN3-208ENST00000561505 PCOTHQ58A44 107 aa8.9□□□□□ -0.98
CLN3-208ENST00000561505 ST20-AS1Q8NBB2 130 aa8.9□□□□□ -0.98
CLN3-208ENST00000561505 EIF4EBP3O60516 100 aaPredicted RBP8.89□□□□□ -0.99
CLN3-208ENST00000561505 C9orf153Q5TBE3 101 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms