RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 PKIGQ9Y2B9 76 aa9.12□□□□□ -0.95
USP3-221ENST00000561442 A0A087WYN8 130 aa9.11□□□□□ -0.95
USP3-221ENST00000561442 C9orf116Q5BN46 136 aaPredicted RBP9.11□□□□□ -0.95
USP3-221ENST00000561442 GTF2H5Q6ZYL4 71 aa9.11□□□□□ -0.95
USP3-221ENST00000561442 PLEKHB2Q96CS7 222 aa9.11□□□□□ -0.95
USP3-221ENST00000561442 ZNF815PA8K554 130 aa9.1□□□□□ -0.95
USP3-221ENST00000561442 LEPROTO15243 131 aa9.1□□□□□ -0.95
USP3-221ENST00000561442 Q5VSD8 79 aa9.1□□□□□ -0.95
USP3-221ENST00000561442 LINC00528Q8N1L1 170 aa9.1□□□□□ -0.95
USP3-221ENST00000561442 SPANXB1Q9NS25 103 aaPredicted RBP9.1□□□□□ -0.95
USP3-221ENST00000561442 IGLV5-39A0A0G2JS06 123 aa9.09□□□□□ -0.95
USP3-221ENST00000561442 TRBV30A0A0K0K1B3 111 aa9.09□□□□□ -0.95
USP3-221ENST00000561442 EPM2AB3EWF7 344 aa9.09□□□□□ -0.95
USP3-221ENST00000561442 HIST1H4GQ99525 98 aa9.09□□□□□ -0.95
USP3-221ENST00000561442 SRRM2Q9UQ35 2752 aaKnown RBP9.08□□□□□ -0.96
USP3-221ENST00000561442 ABCA13Q86UQ4 5058 aa9.08□□□□□ -0.96
USP3-221ENST00000561442 TMEM223A0PJW6 202 aa9.08□□□□□ -0.96
USP3-221ENST00000561442 GAGE2EQ4V326 116 aa9.08□□□□□ -0.96
USP3-221ENST00000561442 LINC00474Q9P2X8 69 aa9.08□□□□□ -0.96
USP3-221ENST00000561442 GAGE2DQ9UEU5 116 aa9.08□□□□□ -0.96
USP3-221ENST00000561442 A0A1B0GWB2 263 aa9.07□□□□□ -0.96
USP3-221ENST00000561442 FAM229AH3BQW9 127 aa9.07□□□□□ -0.96
USP3-221ENST00000561442 LGALS3P17931 250 aaKnown RBP9.07□□□□□ -0.96
USP3-221ENST00000561442 CXCL5P42830 114 aa9.07□□□□□ -0.96
USP3-221ENST00000561442 SCGB1D4Q6XE38 83 aa9.07□□□□□ -0.96
USP3-221ENST00000561442 Q6ZRP5 223 aa9.07□□□□□ -0.96
USP3-221ENST00000561442 TTTY13Q9BZ97 58 aa9.07□□□□□ -0.96
USP3-221ENST00000561442 PLAC8Q9NZF1 115 aa9.07□□□□□ -0.96
USP3-221ENST00000561442 J3QQQ9 107 aa9.06□□□□□ -0.96
USP3-221ENST00000561442 TLX1NBP0CAT3 122 aa9.06□□□□□ -0.96
USP3-221ENST00000561442 FXYD2P54710 66 aa9.06□□□□□ -0.96
USP3-221ENST00000561442 NDUFC2-KCTD14E9PQ53 114 aa9.05□□□□□ -0.96
USP3-221ENST00000561442 FABP2P12104 132 aa9.05□□□□□ -0.96
USP3-221ENST00000561442 A0A1W2PNN7 141 aa9.04□□□□□ -0.96
USP3-221ENST00000561442 A0A1W2PPM0 123 aa9.04□□□□□ -0.96
USP3-221ENST00000561442 GAGE10A6NGK3 116 aa9.04□□□□□ -0.96
USP3-221ENST00000561442 K7EP34 96 aa9.04□□□□□ -0.96
USP3-221ENST00000561442 H3BUT2 72 aa9.03□□□□□ -0.96
USP3-221ENST00000561442 Q6ZVH6 145 aa9.03□□□□□ -0.96
USP3-221ENST00000561442 NHP2Q9NX24 153 aaKnown RBP9.03□□□□□ -0.96
USP3-221ENST00000561442 FAM168BA1KXE4 195 aa9.02□□□□□ -0.97
USP3-221ENST00000561442 TMEM238C9JI98 176 aa9.02□□□□□ -0.97
USP3-221ENST00000561442 SRSF9Q13242 221 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP3-221ENST00000561442 PLA2G1BP04054 148 aaKnown RBP9.01□□□□□ -0.97
USP3-221ENST00000561442 RPL37AP61513 92 aaKnown RBP9.01□□□□□ -0.97
USP3-221ENST00000561442 LYRM7Q5U5X0 104 aa9.01□□□□□ -0.97
USP3-221ENST00000561442 ZNF625Q96I27 306 aaPredicted RBP9.01□□□□□ -0.97
USP3-221ENST00000561442 XAGE1AQ9HD64 81 aa9.01□□□□□ -0.97
USP3-221ENST00000561442 C9orf129Q5T035 196 aaKnown RBP9□□□□□ -0.97
USP3-221ENST00000561442 FAM19A5Q7Z5A7 132 aaPredicted RBP9□□□□□ -0.97
USP3-221ENST00000561442 C7orf33Q8WU49 177 aa9□□□□□ -0.97
USP3-221ENST00000561442 TIMM17BO60830 172 aa8.99□□□□□ -0.97
USP3-221ENST00000561442 PFN2P35080 140 aa8.99□□□□□ -0.97
USP3-221ENST00000561442 RAB37Q96AX2 223 aa8.99□□□□□ -0.97
USP3-221ENST00000561442 SPCS1Q9Y6A9 102 aa8.99□□□□□ -0.97
USP3-221ENST00000561442 TSPEAR-AS2P59090 65 aa8.98□□□□□ -0.97
USP3-221ENST00000561442 RPL24P83731 157 aaKnown RBP8.98□□□□□ -0.97
USP3-221ENST00000561442 PHF5AQ7RTV0 110 aaKnown RBP8.98□□□□□ -0.97
USP3-221ENST00000561442 PKHD1L1Q86WI1 4243 aa8.98□□□□□ -0.97
USP3-221ENST00000561442 PCLOQ9Y6V0 5065 aa8.98□□□□□ -0.97
USP3-221ENST00000561442 KRTAP10-4P60372 401 aaPredicted RBP8.97□□□□□ -0.97
USP3-221ENST00000561442 ERG28Q9UKR5 140 aa8.97□□□□□ -0.97
USP3-221ENST00000561442 MYCBP2O75592 4640 aa8.96□□□□□ -0.97
USP3-221ENST00000561442 A0A0J9YXY3 114 aa8.96□□□□□ -0.98
USP3-221ENST00000561442 INAFM2P0DMQ5 153 aa8.96□□□□□ -0.98
USP3-221ENST00000561442 SFTA2Q6UW10 78 aa8.96□□□□□ -0.98
USP3-221ENST00000561442 KRTAP7-1Q8IUC3 87 aa8.96□□□□□ -0.98
USP3-221ENST00000561442 COPS9Q8WXC6 57 aa8.96□□□□□ -0.98
USP3-221ENST00000561442 SPANXDQ9BXN6 97 aa8.96□□□□□ -0.98
USP3-221ENST00000561442 SPANXCQ9NY87 97 aa8.96□□□□□ -0.98
USP3-221ENST00000561442 NDUFA12Q9UI09 145 aa8.96□□□□□ -0.98
USP3-221ENST00000561442 A0A0U1RRA0 63 aa8.95□□□□□ -0.98
USP3-221ENST00000561442 SERTAD4-AS1Q5TG53 156 aa8.95□□□□□ -0.98
USP3-221ENST00000561442 PPDPFQ9H3Y8 114 aa8.95□□□□□ -0.98
USP3-221ENST00000561442 A0A0B4J2C4 111 aa8.94□□□□□ -0.98
USP3-221ENST00000561442 M0QXV9 152 aa8.94□□□□□ -0.98
USP3-221ENST00000561442 IFITM1P13164 125 aa8.94□□□□□ -0.98
USP3-221ENST00000561442 K7ERJ3 54 aa8.93□□□□□ -0.98
USP3-221ENST00000561442 LINC00158P58513 81 aa8.93□□□□□ -0.98
USP3-221ENST00000561442 F8W1H4 67 aa8.92□□□□□ -0.98
USP3-221ENST00000561442 HERV-K104P63124 156 aa8.92□□□□□ -0.98
USP3-221ENST00000561442 PRR3P79522 188 aaKnown RBP8.92□□□□□ -0.98
USP3-221ENST00000561442 COX17Q14061 63 aa8.92□□□□□ -0.98
USP3-221ENST00000561442 MEIG1Q5JSS6 88 aa8.92□□□□□ -0.98
USP3-221ENST00000561442 SND1-IT1Q9HBX3 110 aa8.92□□□□□ -0.98
USP3-221ENST00000561442 TRBV20-1A0A075B6N2 111 aa8.91□□□□□ -0.98
USP3-221ENST00000561442 K7ERU9 68 aa8.91□□□□□ -0.98
USP3-221ENST00000561442 PRO1854Q9UHT4 67 aa8.91□□□□□ -0.98
USP3-221ENST00000561442 C22orf24Q9Y442 160 aa8.91□□□□□ -0.98
USP3-221ENST00000561442 FAT3Q8TDW7 4589 aa8.89□□□□□ -0.99
USP3-221ENST00000561442 CFC1BP0CG36 223 aa8.89□□□□□ -0.99
USP3-221ENST00000561442 CFC1P0CG37 223 aa8.89□□□□□ -0.99
USP3-221ENST00000561442 UBE2BP63146 152 aa8.89□□□□□ -0.99
USP3-221ENST00000561442 KRTAP11-1Q8IUC1 163 aa8.89□□□□□ -0.99
USP3-221ENST00000561442 LITAFQ99732 161 aa8.89□□□□□ -0.99
USP3-221ENST00000561442 PSORS1C2Q9UIG4 136 aa8.89□□□□□ -0.99
USP3-221ENST00000561442 TSPAN13O95857 204 aa8.88□□□□□ -0.99
USP3-221ENST00000561442 NAA38Q9BRA0 125 aaKnown RBP8.88□□□□□ -0.99
USP3-221ENST00000561442 FLG2Q5D862 2391 aaPredicted RBP8.87□□□□□ -0.99
USP3-221ENST00000561442 LRP1Q07954 4544 aaKnown RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms