RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 NDUFB1O75438 58 aa11.29□□□□□ -0.6
CUX1-213ENST00000549414 ZNF575Q86XF7 245 aa11.29□□□□□ -0.6
CUX1-213ENST00000549414 IGLV5-45A0A087WSX0 123 aa11.29□□□□□ -0.6
CUX1-213ENST00000549414 NBEAL2Q6ZNJ1 2754 aa11.28□□□□□ -0.6
CUX1-213ENST00000549414 H0Y9J4 135 aa11.28□□□□□ -0.6
CUX1-213ENST00000549414 PRO0461Q9UI25 63 aa11.28□□□□□ -0.6
CUX1-213ENST00000549414 CCDC179H3BU77 68 aa11.27□□□□□ -0.61
CUX1-213ENST00000549414 USP17L23D6RBM5 183 aa11.26□□□□□ -0.61
CUX1-213ENST00000549414 A0A087WVE0 104 aa11.26□□□□□ -0.61
CUX1-213ENST00000549414 Q6ZRU5 148 aa11.25□□□□□ -0.61
CUX1-213ENST00000549414 NUPR2A6NF83 97 aa11.25□□□□□ -0.61
CUX1-213ENST00000549414 EIF4EBP3O60516 100 aaPredicted RBP11.25□□□□□ -0.61
CUX1-213ENST00000549414 NSD1Q96L73 2696 aaPredicted RBP11.25□□□□□ -0.61
CUX1-213ENST00000549414 CDIP1Q9H305 208 aa11.24□□□□□ -0.61
CUX1-213ENST00000549414 C10orf25Q5T742 122 aa11.24□□□□□ -0.61
CUX1-213ENST00000549414 KRTAP1-3Q8IUG1 177 aa11.24□□□□□ -0.61
CUX1-213ENST00000549414 UQCRQO14949 82 aa11.23□□□□□ -0.61
CUX1-213ENST00000549414 C7orf33Q8WU49 177 aa11.23□□□□□ -0.61
CUX1-213ENST00000549414 FAM240AA0A1B0GVK7 77 aa11.22□□□□□ -0.61
CUX1-213ENST00000549414 FAM218AQ96MZ4 157 aa11.22□□□□□ -0.61
CUX1-213ENST00000549414 GIG44P09565 113 aaPredicted RBP11.22□□□□□ -0.61
CUX1-213ENST00000549414 ESRGQ1W209 222 aa11.22□□□□□ -0.61
CUX1-213ENST00000549414 NDUFC2-KCTD14E9PQ53 114 aa11.22□□□□□ -0.61
CUX1-213ENST00000549414 LOC107984640A0A0U1RRK4 108 aa11.21□□□□□ -0.61
CUX1-213ENST00000549414 SPINK6Q6UWN8 80 aa11.21□□□□□ -0.61
CUX1-213ENST00000549414 SBSPONQ8IVN8 264 aa11.21□□□□□ -0.61
CUX1-213ENST00000549414 LITAFQ99732 161 aa11.21□□□□□ -0.61
CUX1-213ENST00000549414 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.21□□□□□ -0.62
CUX1-213ENST00000549414 MUC7Q8TAX7 377 aa11.2□□□□□ -0.62
CUX1-213ENST00000549414 CSNK1G2-AS1Q8NCQ2 148 aa11.2□□□□□ -0.62
CUX1-213ENST00000549414 WDFY3Q8IZQ1 3526 aa11.2□□□□□ -0.62
CUX1-213ENST00000549414 Q8NAQ8 132 aa11.2□□□□□ -0.62
CUX1-213ENST00000549414 NDUFC2O95298 119 aa11.19□□□□□ -0.62
CUX1-213ENST00000549414 ATP5EP2Q5VTU8 51 aa11.19□□□□□ -0.62
CUX1-213ENST00000549414 HRCT1Q6UXD1 115 aa11.19□□□□□ -0.62
CUX1-213ENST00000549414 C3orf22Q8N5N4 141 aa11.19□□□□□ -0.62
CUX1-213ENST00000549414 IMUPQ9GZP8 106 aa11.19□□□□□ -0.62
CUX1-213ENST00000549414 KRTAP10-3P60369 221 aa11.17□□□□□ -0.62
CUX1-213ENST00000549414 C19orf73Q9NVV2 129 aa11.17□□□□□ -0.62
CUX1-213ENST00000549414 DHRS4-AS1Q9P1J3 65 aa11.17□□□□□ -0.62
CUX1-213ENST00000549414 LINC00846Q9NV44 126 aa11.17□□□□□ -0.62
CUX1-213ENST00000549414 MUC3AQ02505 3323 aa11.16□□□□□ -0.62
CUX1-213ENST00000549414 M0QXV9 152 aa11.16□□□□□ -0.62
CUX1-213ENST00000549414 MP68P56378 58 aa11.16□□□□□ -0.62
CUX1-213ENST00000549414 ZANQ9Y493 2812 aa11.15□□□□□ -0.62
CUX1-213ENST00000549414 LINC00575Q6W349 94 aa11.15□□□□□ -0.62
CUX1-213ENST00000549414 C6orf48Q9UBA6 75 aa11.15□□□□□ -0.63
CUX1-213ENST00000549414 IGLV9-49A0A0B4J1Y8 123 aa11.14□□□□□ -0.63
CUX1-213ENST00000549414 Q6JHZ5 121 aa11.14□□□□□ -0.63
CUX1-213ENST00000549414 SNURFQ9Y675 71 aa11.14□□□□□ -0.63
CUX1-213ENST00000549414 PLAC8L1A1L4L8 177 aa11.14□□□□□ -0.63
CUX1-213ENST00000549414 J3KT08 172 aa11.13□□□□□ -0.63
CUX1-213ENST00000549414 LINC01561Q8N1V8 128 aa11.13□□□□□ -0.63
CUX1-213ENST00000549414 SERP2Q8N6R1 65 aa11.13□□□□□ -0.63
CUX1-213ENST00000549414 KRTAP1-1Q07627 177 aa11.13□□□□□ -0.63
CUX1-213ENST00000549414 ITPR2Q14571 2701 aa11.12□□□□□ -0.63
CUX1-213ENST00000549414 C2orf48Q96LS8 159 aa11.11□□□□□ -0.63
CUX1-213ENST00000549414 Q6Q795 121 aa11.11□□□□□ -0.63
CUX1-213ENST00000549414 WFDC13Q8IUB5 93 aa11.11□□□□□ -0.63
CUX1-213ENST00000549414 IGLV5-52A0A0A0MRZ9 124 aa11.1□□□□□ -0.63
CUX1-213ENST00000549414 COX7CP15954 63 aa11.1□□□□□ -0.63
CUX1-213ENST00000549414 C1orf134Q5TEV5 83 aa11.09□□□□□ -0.63
CUX1-213ENST00000549414 ASH1LQ9NR48 2969 aaKnown RBP11.09□□□□□ -0.63
CUX1-213ENST00000549414 MDFIQ99750 246 aa11.09□□□□□ -0.63
CUX1-213ENST00000549414 C1orf137Q5JT78 98 aa11.08□□□□□ -0.64
CUX1-213ENST00000549414 LINC01556Q5JQF7 62 aa11.08□□□□□ -0.64
CUX1-213ENST00000549414 UTP20O75691 2785 aaKnown RBP11.08□□□□□ -0.64
CUX1-213ENST00000549414 CR1P17927 2039 aa11.07□□□□□ -0.64
CUX1-213ENST00000549414 TMEM258P61165 79 aa11.07□□□□□ -0.64
CUX1-213ENST00000549414 NHLRC4P0CG21 123 aaPredicted RBP11.07□□□□□ -0.64
CUX1-213ENST00000549414 SPATA3Q8NHX4 192 aa11.07□□□□□ -0.64
CUX1-213ENST00000549414 REG3GQ6UW15 175 aa11.05□□□□□ -0.64
CUX1-213ENST00000549414 MRPL55Q7Z7F7 128 aaKnown RBP11.05□□□□□ -0.64
CUX1-213ENST00000549414 IGKV4-1P06312 121 aa11.05□□□□□ -0.64
CUX1-213ENST00000549414 PRLHP81277 87 aa11.05□□□□□ -0.64
CUX1-213ENST00000549414 LINC00474Q9P2X8 69 aa11.03□□□□□ -0.64
CUX1-213ENST00000549414 ASPMQ8IZT6 3477 aa11.03□□□□□ -0.64
CUX1-213ENST00000549414 FAM236DA0A1B0GTK5 79 aa11.02□□□□□ -0.64
CUX1-213ENST00000549414 FAM236CP0DP71 79 aa11.02□□□□□ -0.64
CUX1-213ENST00000549414 PRR4Q16378 134 aa11.02□□□□□ -0.64
CUX1-213ENST00000549414 C22orf24Q9Y442 160 aa11.02□□□□□ -0.65
CUX1-213ENST00000549414 Q6ZVQ6 151 aa11.02□□□□□ -0.65
CUX1-213ENST00000549414 DCHS1Q96JQ0 3298 aa11.01□□□□□ -0.65
CUX1-213ENST00000549414 DEFB116Q30KQ4 102 aa11.01□□□□□ -0.65
CUX1-213ENST00000549414 FAM19A3Q7Z5A8 133 aa11.01□□□□□ -0.65
CUX1-213ENST00000549414 Q8N9L7 120 aa11.01□□□□□ -0.65
CUX1-213ENST00000549414 KRTAP10-11P60412 298 aa11□□□□□ -0.65
CUX1-213ENST00000549414 FAM30AQ9NZY2 134 aa10.99□□□□□ -0.65
CUX1-213ENST00000549414 C5orf47Q569G3 176 aa10.98□□□□□ -0.65
CUX1-213ENST00000549414 LINC00588Q9Y4M8 146 aa10.98□□□□□ -0.65
CUX1-213ENST00000549414 LINC00167Q96N53 147 aa10.98□□□□□ -0.65
CUX1-213ENST00000549414 H3BNG1 76 aa10.97□□□□□ -0.65
CUX1-213ENST00000549414 CIRBP-AS1Q8TBR5 109 aa10.97□□□□□ -0.65
CUX1-213ENST00000549414 STAB2Q8WWQ8 2551 aa10.96□□□□□ -0.66
CUX1-213ENST00000549414 A0A087WSZ3 146 aa10.96□□□□□ -0.66
CUX1-213ENST00000549414 CHKB-CPT1BH3BT56 60 aa10.96□□□□□ -0.66
CUX1-213ENST00000549414 KIAA0087Q14695 138 aa10.96□□□□□ -0.66
CUX1-213ENST00000549414 LINC01547P58512 204 aaPredicted RBP10.95□□□□□ -0.66
CUX1-213ENST00000549414 MPLKIPQ8TAP9 179 aa10.95□□□□□ -0.66
CUX1-213ENST00000549414 TRBV7-7A0A0K0K1E9 115 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms