RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 HERVK_113P61574 105 aa7.14□□□□□ -1.27
HDAC4-216ENST00000544989 MAP1LC3CQ9BXW4 147 aa7.14□□□□□ -1.27
HDAC4-216ENST00000544989 GAGE10A6NGK3 116 aa7.13□□□□□ -1.27
HDAC4-216ENST00000544989 DPM2O94777 84 aa7.13□□□□□ -1.27
HDAC4-216ENST00000544989 VPREB1P12018 145 aa7.13□□□□□ -1.27
HDAC4-216ENST00000544989 LINC00310P59036 64 aa7.13□□□□□ -1.27
HDAC4-216ENST00000544989 PLEKHB2Q96CS7 222 aa7.13□□□□□ -1.27
HDAC4-216ENST00000544989 NDUFA12Q9UI09 145 aa7.13□□□□□ -1.27
HDAC4-216ENST00000544989 FABP4P15090 132 aa7.12□□□□□ -1.27
HDAC4-216ENST00000544989 MEIG1Q5JSS6 88 aa7.12□□□□□ -1.27
HDAC4-216ENST00000544989 LEPROTO15243 131 aa7.11□□□□□ -1.27
HDAC4-216ENST00000544989 IGKCP01834 107 aa7.11□□□□□ -1.27
HDAC4-216ENST00000544989 NMUP48645 174 aa7.11□□□□□ -1.27
HDAC4-216ENST00000544989 UBE2AP49459 152 aa7.11□□□□□ -1.27
HDAC4-216ENST00000544989 IGKV2-28A0A075B6P5 120 aa7.1□□□□□ -1.27
HDAC4-216ENST00000544989 IGKV2D-28P01615 120 aa7.1□□□□□ -1.27
HDAC4-216ENST00000544989 KRTAP1-4P0C5Y4 121 aa7.1□□□□□ -1.27
HDAC4-216ENST00000544989 PRR26Q8N8Z3 221 aa7.1□□□□□ -1.27
HDAC4-216ENST00000544989 M0R378 163 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST1H2BKO60814 126 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST1H2BJP06899 126 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 SMIM13P0DJ93 91 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 S100A1P23297 94 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST1H2BOP23527 126 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST1H2BBP33778 126 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST1H2BDP58876 126 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST1H2BCP62807 126 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST2H2BEQ16778 126 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST1H2BHQ93079 126 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST1H2BNQ99877 126 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 HIST1H2BMQ99879 126 aa7.09□□□□□ -1.27
HDAC4-216ENST00000544989 IGKV2D-26A0A0A0MRZ7 120 aa7.08□□□□□ -1.28
HDAC4-216ENST00000544989 J3QQQ9 107 aa7.08□□□□□ -1.28
HDAC4-216ENST00000544989 LGALS3P17931 250 aaKnown RBP7.08□□□□□ -1.28
HDAC4-216ENST00000544989 A0A0U1RRA0 63 aa7.07□□□□□ -1.28
HDAC4-216ENST00000544989 S100A12P80511 92 aa7.07□□□□□ -1.28
HDAC4-216ENST00000544989 KRTAP13-1Q8IUC0 172 aa7.07□□□□□ -1.28
HDAC4-216ENST00000544989 BOD1L2Q8IYS8 172 aa7.07□□□□□ -1.28
HDAC4-216ENST00000544989 MIR7-3HGQ8N6C7 128 aa7.07□□□□□ -1.28
HDAC4-216ENST00000544989 TMEM126AQ9H061 195 aa7.07□□□□□ -1.28
HDAC4-216ENST00000544989 SCO1O75880 301 aa7.06□□□□□ -1.28
HDAC4-216ENST00000544989 CRYGAP11844 174 aa7.06□□□□□ -1.28
HDAC4-216ENST00000544989 FAM19A1Q7Z5A9 133 aa7.06□□□□□ -1.28
HDAC4-216ENST00000544989 LOC107984156A0A0G2JMH3 177 aa7.05□□□□□ -1.28
HDAC4-216ENST00000544989 SYS1-DBNDD2H3BUS1 97 aa7.05□□□□□ -1.28
HDAC4-216ENST00000544989 PET117Q6UWS5 81 aa7.05□□□□□ -1.28
HDAC4-216ENST00000544989 ARL17AQ8IVW1 177 aa7.05□□□□□ -1.28
HDAC4-216ENST00000544989 MIEN1Q9BRT3 115 aa7.05□□□□□ -1.28
HDAC4-216ENST00000544989 TMEM238C9JI98 176 aa7.04□□□□□ -1.28
HDAC4-216ENST00000544989 E9PLD3 99 aa7.04□□□□□ -1.28
HDAC4-216ENST00000544989 PRYO14603 147 aa7.04□□□□□ -1.28
HDAC4-216ENST00000544989 TSPEAR-AS2P59090 65 aa7.04□□□□□ -1.28
HDAC4-216ENST00000544989 FAM229BQ4G0N7 80 aa7.04□□□□□ -1.28
HDAC4-216ENST00000544989 PMCHL2Q9BQD1 86 aa7.04□□□□□ -1.28
HDAC4-216ENST00000544989 COA6Q5JTJ3 125 aaKnown RBP7.03□□□□□ -1.28
HDAC4-216ENST00000544989 Q8NDZ9 215 aa7.03□□□□□ -1.28
HDAC4-216ENST00000544989 TRBV10-2A0A0K0K1G8 114 aa7.02□□□□□ -1.29
HDAC4-216ENST00000544989 AKR1D1P51857 326 aa7.02□□□□□ -1.29
HDAC4-216ENST00000544989 LINC01545Q5VT33 79 aa7.02□□□□□ -1.29
HDAC4-216ENST00000544989 KCNQ1DNQ9H478 68 aa7.02□□□□□ -1.29
HDAC4-216ENST00000544989 NCR3O14931 201 aa7.01□□□□□ -1.29
HDAC4-216ENST00000544989 PRLHP81277 87 aa7.01□□□□□ -1.29
HDAC4-216ENST00000544989 TYMSOSQ8TAI1 123 aa7.01□□□□□ -1.29
HDAC4-216ENST00000544989 ZNF706Q9Y5V0 76 aaPredicted RBP7.01□□□□□ -1.29
HDAC4-216ENST00000544989 FAT4Q6V0I7 4981 aa7.01□□□□□ -1.29
HDAC4-216ENST00000544989 C20orf202A1L168 122 aa7□□□□□ -1.29
HDAC4-216ENST00000544989 NDUFC2O95298 119 aa7□□□□□ -1.29
HDAC4-216ENST00000544989 LINC00337Q8N6G1 96 aa7□□□□□ -1.29
HDAC4-216ENST00000544989 SPANXB1Q9NS25 103 aaPredicted RBP7□□□□□ -1.29
HDAC4-216ENST00000544989 CBY1Q9Y3M2 126 aa7□□□□□ -1.29
HDAC4-216ENST00000544989 A0A0J9YXY3 114 aa6.99□□□□□ -1.29
HDAC4-216ENST00000544989 ETDCA0A1B0GVM5 59 aa6.99□□□□□ -1.29
HDAC4-216ENST00000544989 CTAG1AP78358 180 aa6.99□□□□□ -1.29
HDAC4-216ENST00000544989 HIGD2AQ9BW72 106 aa6.99□□□□□ -1.29
HDAC4-216ENST00000544989 MUC2Q02817 5179 aa6.98□□□□□ -1.29
HDAC4-216ENST00000544989 A0A087X002 238 aa6.98□□□□□ -1.29
HDAC4-216ENST00000544989 C3orf79P0CE67 100 aa6.98□□□□□ -1.29
HDAC4-216ENST00000544989 DDTP30046 118 aa6.98□□□□□ -1.29
HDAC4-216ENST00000544989 SPRR1AP35321 89 aa6.98□□□□□ -1.29
HDAC4-216ENST00000544989 DAND5Q8N907 189 aa6.98□□□□□ -1.29
HDAC4-216ENST00000544989 TRBV10-3A0A0K0K1G6 114 aa6.97□□□□□ -1.29
HDAC4-216ENST00000544989 TIMM17BO60830 172 aa6.97□□□□□ -1.29
HDAC4-216ENST00000544989 S100A7L2Q5SY68 101 aa6.97□□□□□ -1.29
HDAC4-216ENST00000544989 KRTDAPP60985 99 aa6.96□□□□□ -1.3
HDAC4-216ENST00000544989 ZNF815PA8K554 130 aa6.95□□□□□ -1.3
HDAC4-216ENST00000544989 COPS9Q8WXC6 57 aa6.95□□□□□ -1.3
HDAC4-216ENST00000544989 ANAPC11Q9NYG5 84 aa6.95□□□□□ -1.3
HDAC4-216ENST00000544989 KRTAP4-16G5E9R7 235 aaPredicted RBP6.94□□□□□ -1.3
HDAC4-216ENST00000544989 IGLV6-57P01721 117 aa6.94□□□□□ -1.3
HDAC4-216ENST00000544989 JOSD1Q15040 202 aaPredicted RBP6.94□□□□□ -1.3
HDAC4-216ENST00000544989 KRTAP13-2Q52LG2 175 aa6.94□□□□□ -1.3
HDAC4-216ENST00000544989 SPRR4Q96PI1 79 aa6.94□□□□□ -1.3
HDAC4-216ENST00000544989 HINT1P49773 126 aaPredicted RBP6.93□□□□□ -1.3
HDAC4-216ENST00000544989 ADAMTSL4-AS1Q5T5F5 129 aa6.93□□□□□ -1.3
HDAC4-216ENST00000544989 LINC00304Q8N9R0 145 aa6.93□□□□□ -1.3
HDAC4-216ENST00000544989 SPANXCQ9NY87 97 aa6.93□□□□□ -1.3
HDAC4-216ENST00000544989 LPAP08519 4548 aa6.93□□□□□ -1.3
HDAC4-216ENST00000544989 B5MCH6 92 aa6.92□□□□□ -1.3
HDAC4-216ENST00000544989 SNRPEP62304 92 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms