RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 HIST1H2BHQ93079 126 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HIST1H2BNQ99877 126 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HIST1H2BMQ99879 126 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HSPB8Q9UJY1 196 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 FABP4P15090 132 aa6.87□□□□□ -1.31
YBX3-216ENST00000544622 IGLV1-50A0A075B6I6 118 aa6.86□□□□□ -1.31
YBX3-216ENST00000544622 RPL37AP8A6NKH3 93 aa6.86□□□□□ -1.31
YBX3-216ENST00000544622 BCE1O60756 84 aa6.86□□□□□ -1.31
YBX3-216ENST00000544622 PLNP26678 52 aa6.86□□□□□ -1.31
YBX3-216ENST00000544622 KRTAP13-1Q8IUC0 172 aa6.86□□□□□ -1.31
YBX3-216ENST00000544622 H0Y8G0 127 aa6.85□□□□□ -1.31
YBX3-216ENST00000544622 GAGE10A6NGK3 116 aa6.84□□□□□ -1.31
YBX3-216ENST00000544622 TSPEAR-AS2P59090 65 aa6.84□□□□□ -1.31
YBX3-216ENST00000544622 HERV-K104P63124 156 aa6.84□□□□□ -1.31
YBX3-216ENST00000544622 RPL24P83731 157 aaKnown RBP6.84□□□□□ -1.31
YBX3-216ENST00000544622 PRR26Q8N8Z3 221 aa6.84□□□□□ -1.31
YBX3-216ENST00000544622 NKAPP1Q8N9T2 125 aa6.84□□□□□ -1.31
YBX3-216ENST00000544622 LEPROTO15243 131 aa6.83□□□□□ -1.32
YBX3-216ENST00000544622 DPM2O94777 84 aa6.83□□□□□ -1.32
YBX3-216ENST00000544622 IGKCP01834 107 aa6.83□□□□□ -1.32
YBX3-216ENST00000544622 SMIM13P0DJ93 91 aa6.83□□□□□ -1.32
YBX3-216ENST00000544622 LINC00158P58513 81 aa6.83□□□□□ -1.32
YBX3-216ENST00000544622 COA6Q5JTJ3 125 aaKnown RBP6.83□□□□□ -1.32
YBX3-216ENST00000544622 PMCHL2Q9BQD1 86 aa6.83□□□□□ -1.32
YBX3-216ENST00000544622 NDUFA12Q9UI09 145 aa6.83□□□□□ -1.32
YBX3-216ENST00000544622 IGKV2-28A0A075B6P5 120 aa6.82□□□□□ -1.32
YBX3-216ENST00000544622 LOC107984156A0A0G2JMH3 177 aa6.82□□□□□ -1.32
YBX3-216ENST00000544622 A0A0U1RRA0 63 aa6.82□□□□□ -1.32
YBX3-216ENST00000544622 MYMXA0A1B0GTQ4 84 aa6.82□□□□□ -1.32
YBX3-216ENST00000544622 LINC00587B1AMM8 73 aa6.82□□□□□ -1.32
YBX3-216ENST00000544622 IGKV2D-28P01615 120 aa6.82□□□□□ -1.32
YBX3-216ENST00000544622 RPL28P46779 137 aaKnown RBP6.82□□□□□ -1.32
YBX3-216ENST00000544622 ARL17AQ8IVW1 177 aa6.82□□□□□ -1.32
YBX3-216ENST00000544622 MAP1LC3CQ9BXW4 147 aa6.82□□□□□ -1.32
YBX3-216ENST00000544622 SYS1-DBNDD2H3BUS1 97 aa6.81□□□□□ -1.32
YBX3-216ENST00000544622 J3QQQ9 107 aa6.81□□□□□ -1.32
YBX3-216ENST00000544622 PLEKHB2Q96CS7 222 aa6.81□□□□□ -1.32
YBX3-216ENST00000544622 M0R378 163 aa6.8□□□□□ -1.32
YBX3-216ENST00000544622 MIR7-3HGQ8N6C7 128 aa6.8□□□□□ -1.32
YBX3-216ENST00000544622 TMEM126AQ9H061 195 aa6.8□□□□□ -1.32
YBX3-216ENST00000544622 LPAP08519 4548 aa6.8□□□□□ -1.32
YBX3-216ENST00000544622 TMEM238C9JI98 176 aa6.79□□□□□ -1.32
YBX3-216ENST00000544622 E9PLD3 99 aa6.79□□□□□ -1.32
YBX3-216ENST00000544622 NMUP48645 174 aa6.79□□□□□ -1.32
YBX3-216ENST00000544622 MEIG1Q5JSS6 88 aa6.79□□□□□ -1.32
YBX3-216ENST00000544622 IGKV2D-26A0A0A0MRZ7 120 aa6.78□□□□□ -1.32
YBX3-216ENST00000544622 HERVK_113P61574 105 aa6.78□□□□□ -1.32
YBX3-216ENST00000544622 LINC01545Q5VT33 79 aa6.78□□□□□ -1.32
YBX3-216ENST00000544622 RNF213Q63HN8 5207 aa6.77□□□□□ -1.33
YBX3-216ENST00000544622 A0A087X002 238 aa6.77□□□□□ -1.33
YBX3-216ENST00000544622 RPL13AP40429 203 aaKnown RBP6.77□□□□□ -1.33
YBX3-216ENST00000544622 PET117Q6UWS5 81 aa6.77□□□□□ -1.33
YBX3-216ENST00000544622 BOD1L2Q8IYS8 172 aa6.77□□□□□ -1.33
YBX3-216ENST00000544622 ATP6V1G1O75348 118 aa6.76□□□□□ -1.33
YBX3-216ENST00000544622 C3orf79P0CE67 100 aa6.76□□□□□ -1.33
YBX3-216ENST00000544622 SPRR1AP35321 89 aa6.76□□□□□ -1.33
YBX3-216ENST00000544622 DAND5Q8N907 189 aa6.76□□□□□ -1.33
YBX3-216ENST00000544622 KCNQ1DNQ9H478 68 aa6.76□□□□□ -1.33
YBX3-216ENST00000544622 A0A0J9YXY3 114 aa6.75□□□□□ -1.33
YBX3-216ENST00000544622 KRTAP4-16G5E9R7 235 aaPredicted RBP6.75□□□□□ -1.33
YBX3-216ENST00000544622 LGALS3P17931 250 aaKnown RBP6.75□□□□□ -1.33
YBX3-216ENST00000544622 UBE2AP49459 152 aa6.75□□□□□ -1.33
YBX3-216ENST00000544622 PRLHP81277 87 aa6.75□□□□□ -1.33
YBX3-216ENST00000544622 FAM19A1Q7Z5A9 133 aa6.75□□□□□ -1.33
YBX3-216ENST00000544622 ADAMTSL4-AS1Q5T5F5 129 aa6.74□□□□□ -1.33
YBX3-216ENST00000544622 TRBV10-2A0A0K0K1G8 114 aa6.73□□□□□ -1.33
YBX3-216ENST00000544622 EIF4EBP3O60516 100 aaPredicted RBP6.73□□□□□ -1.33
YBX3-216ENST00000544622 CRYGAP11844 174 aa6.73□□□□□ -1.33
YBX3-216ENST00000544622 KRTAP13-2Q52LG2 175 aa6.73□□□□□ -1.33
YBX3-216ENST00000544622 ANAPC11Q9NYG5 84 aa6.73□□□□□ -1.33
YBX3-216ENST00000544622 PRYO14603 147 aa6.72□□□□□ -1.33
YBX3-216ENST00000544622 NCR3O14931 201 aa6.72□□□□□ -1.33
YBX3-216ENST00000544622 NDUFC2O95298 119 aa6.72□□□□□ -1.33
YBX3-216ENST00000544622 S100A1P23297 94 aa6.72□□□□□ -1.33
YBX3-216ENST00000544622 FAM229BQ4G0N7 80 aa6.72□□□□□ -1.33
YBX3-216ENST00000544622 SOSTDC1Q6X4U4 206 aa6.72□□□□□ -1.33
YBX3-216ENST00000544622 LINC00337Q8N6G1 96 aa6.72□□□□□ -1.33
YBX3-216ENST00000544622 LITAFQ99732 161 aa6.72□□□□□ -1.33
YBX3-216ENST00000544622 TRBV10-3A0A0K0K1G6 114 aa6.71□□□□□ -1.34
YBX3-216ENST00000544622 TIMM17BO60830 172 aa6.69□□□□□ -1.34
YBX3-216ENST00000544622 IGLV6-57P01721 117 aa6.69□□□□□ -1.34
YBX3-216ENST00000544622 KRTDAPP60985 99 aa6.69□□□□□ -1.34
YBX3-216ENST00000544622 TTTY13Q9BZ97 58 aa6.69□□□□□ -1.34
YBX3-216ENST00000544622 SPANXB1Q9NS25 103 aaPredicted RBP6.69□□□□□ -1.34
YBX3-216ENST00000544622 DDTP30046 118 aa6.68□□□□□ -1.34
YBX3-216ENST00000544622 TYMSOSQ8TAI1 123 aa6.68□□□□□ -1.34
YBX3-216ENST00000544622 SMCR5Q8TEV8 140 aa6.68□□□□□ -1.34
YBX3-216ENST00000544622 HIGD2AQ9BW72 106 aa6.68□□□□□ -1.34
YBX3-216ENST00000544622 B5MCH6 92 aa6.67□□□□□ -1.34
YBX3-216ENST00000544622 LINC00308Q8TCZ7 52 aa6.67□□□□□ -1.34
YBX3-216ENST00000544622 SPRR4Q96PI1 79 aa6.67□□□□□ -1.34
YBX3-216ENST00000544622 MIEN1Q9BRT3 115 aa6.67□□□□□ -1.34
YBX3-216ENST00000544622 ZNF815PA8K554 130 aa6.66□□□□□ -1.34
YBX3-216ENST00000544622 LCE2BO14633 110 aa6.66□□□□□ -1.34
YBX3-216ENST00000544622 NPC2P61916 151 aa6.66□□□□□ -1.34
YBX3-216ENST00000544622 ANKRD39Q53RE8 183 aa6.66□□□□□ -1.34
YBX3-216ENST00000544622 HIST3H2BBQ8N257 126 aa6.66□□□□□ -1.34
YBX3-216ENST00000544622 MUC2Q02817 5179 aa6.65□□□□□ -1.34
YBX3-216ENST00000544622 ETDCA0A1B0GVM5 59 aa6.65□□□□□ -1.34
YBX3-216ENST00000544622 HIST1H2BLQ99880 126 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms