RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 USF3Q68DE3 2245 aa2.37□□□□□ -2.03
YBX3-210ENST00000540975 IGHV1-18A0A0C4DH31 117 aa2.36□□□□□ -2.03
YBX3-210ENST00000540975 A0A1W2PNM2 257 aa2.36□□□□□ -2.03
YBX3-210ENST00000540975 DEFB108AA8MXU0 73 aa2.36□□□□□ -2.03
YBX3-210ENST00000540975 H3BPC8 53 aa2.36□□□□□ -2.03
YBX3-210ENST00000540975 CTSGP08311 255 aa2.36□□□□□ -2.03
YBX3-210ENST00000540975 HRES1P13985 223 aa2.36□□□□□ -2.03
YBX3-210ENST00000540975 Q9BRP9 147 aa2.36□□□□□ -2.03
YBX3-210ENST00000540975 ORMDL1Q9P0S3 153 aa2.36□□□□□ -2.03
YBX3-210ENST00000540975 LENEPQ9Y5L5 61 aa2.36□□□□□ -2.03
YBX3-210ENST00000540975 SVILO95425 2214 aa2.36□□□□□ -2.03
YBX3-210ENST00000540975 IGKV2-40A0A087WW87 121 aaPredicted RBP2.35□□□□□ -2.03
YBX3-210ENST00000540975 IGKV2D-40P01614 121 aaPredicted RBP2.35□□□□□ -2.03
YBX3-210ENST00000540975 FAM74A4Q5TZK3 123 aa2.35□□□□□ -2.03
YBX3-210ENST00000540975 ENHOQ6UWT2 76 aa2.35□□□□□ -2.03
YBX3-210ENST00000540975 GAFA1Q96PS6 74 aa2.35□□□□□ -2.03
YBX3-210ENST00000540975 KNTC1P50748 2209 aa2.35□□□□□ -2.03
YBX3-210ENST00000540975 KIAA0100Q14667 2235 aaKnown RBP2.35□□□□□ -2.03
YBX3-210ENST00000540975 SPAG17Q6Q759 2223 aa2.35□□□□□ -2.03
YBX3-210ENST00000540975 UNC13CQ8NB66 2214 aa2.35□□□□□ -2.03
YBX3-210ENST00000540975 TRBV10-1A0A0K0K1A3 114 aa2.34□□□□□ -2.03
YBX3-210ENST00000540975 ODF3BA8MYP8 253 aa2.34□□□□□ -2.03
YBX3-210ENST00000540975 PPP1R17O96001 155 aa2.34□□□□□ -2.03
YBX3-210ENST00000540975 POLR2KP53803 58 aaKnown RBP2.34□□□□□ -2.03
YBX3-210ENST00000540975 C10orf55Q5SWW7 151 aa2.34□□□□□ -2.03
YBX3-210ENST00000540975 RPL39LQ96EH5 51 aaKnown RBP2.34□□□□□ -2.03
YBX3-210ENST00000540975 ZNF625Q96I27 306 aaPredicted RBP2.34□□□□□ -2.03
YBX3-210ENST00000540975 PLAC8Q9NZF1 115 aa2.34□□□□□ -2.03
YBX3-210ENST00000540975 RP1L1Q8IWN7 2480 aaPredicted RBP2.34□□□□□ -2.04
YBX3-210ENST00000540975 CACNA1DQ01668 2161 aa2.33□□□□□ -2.04
YBX3-210ENST00000540975 MED12Q93074 2177 aa2.33□□□□□ -2.04
YBX3-210ENST00000540975 CACNA1EQ15878 2313 aa2.33□□□□□ -2.04
YBX3-210ENST00000540975 I3L2K1 104 aa2.33□□□□□ -2.04
YBX3-210ENST00000540975 SPAG11BQ08648 103 aa2.33□□□□□ -2.04
YBX3-210ENST00000540975 SPAG11AQ6PDA7 123 aa2.33□□□□□ -2.04
YBX3-210ENST00000540975 UBL5Q9BZL1 73 aa2.33□□□□□ -2.04
YBX3-210ENST00000540975 PRO3102Q9H379 93 aa2.33□□□□□ -2.04
YBX3-210ENST00000540975 CENPFP49454 3210 aa2.33□□□□□ -2.04
YBX3-210ENST00000540975 OTOGLQ3ZCN5 2332 aa2.33□□□□□ -2.04
YBX3-210ENST00000540975 LCE6AA0A183 80 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 H3BQ85 93 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 NDUFA1O15239 70 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 RPL39P62891 51 aaKnown RBP2.32□□□□□ -2.04
YBX3-210ENST00000540975 KLK9Q2XQG4 91 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 KRTAP26-1Q6PEX3 210 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 WFDC9Q8NEX5 89 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 LINC00308Q8TCZ7 52 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 KLK9Q9UKQ9 250 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 LINC01558Q9Y6Z2 57 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 MINOS1-NBL1R4GNA1 71 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 ZFHX3Q15911 3703 aa2.32□□□□□ -2.04
YBX3-210ENST00000540975 ASCC3Q8N3C0 2202 aaKnown RBP2.32□□□□□ -2.04
YBX3-210ENST00000540975 DIDO1Q9BTC0 2240 aaKnown RBP2.32□□□□□ -2.04
YBX3-210ENST00000540975 KNL1Q8NG31 2342 aa2.31□□□□□ -2.04
YBX3-210ENST00000540975 TRAV21A0A0B4J279 112 aa2.31□□□□□ -2.04
YBX3-210ENST00000540975 IGKV2-29A2NJV5 120 aaPredicted RBP2.31□□□□□ -2.04
YBX3-210ENST00000540975 K7EIM0 57 aa2.31□□□□□ -2.04
YBX3-210ENST00000540975 PI4KAP42356 2102 aa2.31□□□□□ -2.04
YBX3-210ENST00000540975 KRTAP25-1Q3LHN0 102 aa2.31□□□□□ -2.04
YBX3-210ENST00000540975 C1orf137Q5JT78 98 aa2.31□□□□□ -2.04
YBX3-210ENST00000540975 MINOS1Q5TGZ0 78 aa2.31□□□□□ -2.04
YBX3-210ENST00000540975 LEAP2Q969E1 77 aa2.31□□□□□ -2.04
YBX3-210ENST00000540975 INTS1Q8N201 2190 aaKnown RBP2.31□□□□□ -2.04
YBX3-210ENST00000540975 ASXL3Q9C0F0 2248 aa2.31□□□□□ -2.04
YBX3-210ENST00000540975 BRCA2P51587 3418 aa2.31□□□□□ -2.04
YBX3-210ENST00000540975 PRR14LQ5THK1 2151 aa2.3□□□□□ -2.04
YBX3-210ENST00000540975 IGHV3-64A0A075B6Q5 118 aa2.3□□□□□ -2.04
YBX3-210ENST00000540975 NCR3O14931 201 aa2.3□□□□□ -2.04
YBX3-210ENST00000540975 NDUFB1O75438 58 aa2.3□□□□□ -2.04
YBX3-210ENST00000540975 CNBPP62633 177 aaKnown RBP2.3□□□□□ -2.04
YBX3-210ENST00000540975 DEFB108BQ8NET1 73 aa2.3□□□□□ -2.04
YBX3-210ENST00000540975 DMAC1Q96GE9 116 aa2.3□□□□□ -2.04
YBX3-210ENST00000540975 LINC00208Q96KT6 92 aa2.3□□□□□ -2.04
YBX3-210ENST00000540975 ESPL1Q14674 2120 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 LOC110117498A0A087WWA1 95 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 NUPR2A6NF83 97 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 IGHV3-53P01767 116 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 CCL3L1P16619 93 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 COX7B2Q8TF08 81 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 R4GN34 69 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 CHD7Q9P2D1 2997 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 NAV3Q8IVL0 2385 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 RTTNQ86VV8 2226 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 MALRD1Q5VYJ5 2156 aa2.29□□□□□ -2.04
YBX3-210ENST00000540975 USP24Q9UPU5 2620 aa2.28□□□□□ -2.04
YBX3-210ENST00000540975 JMJD7-PLA2G4BH0Y9G9 81 aa2.28□□□□□ -2.04
YBX3-210ENST00000540975 H0YGX0 51 aa2.28□□□□□ -2.04
YBX3-210ENST00000540975 H3BUA1 57 aa2.28□□□□□ -2.04
YBX3-210ENST00000540975 MGPP08493 103 aa2.28□□□□□ -2.04
YBX3-210ENST00000540975 RNASE3P12724 160 aaKnown RBP2.28□□□□□ -2.04
YBX3-210ENST00000540975 SPINK7P58062 85 aa2.28□□□□□ -2.04
YBX3-210ENST00000540975 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.28□□□□□ -2.04
YBX3-210ENST00000540975 HIGD2AQ9BW72 106 aa2.28□□□□□ -2.04
YBX3-210ENST00000540975 CACNA1GO43497 2377 aa2.28□□□□□ -2.05
YBX3-210ENST00000540975 CHD9Q3L8U1 2897 aa2.28□□□□□ -2.05
YBX3-210ENST00000540975 ARHGAP32A7KAX9 2087 aa2.27□□□□□ -2.05
YBX3-210ENST00000540975 BRWD1Q9NSI6 2320 aa2.27□□□□□ -2.05
YBX3-210ENST00000540975 IGKV3-7A0A075B6H7 116 aa2.27□□□□□ -2.05
YBX3-210ENST00000540975 CCL18P55774 89 aa2.27□□□□□ -2.05
YBX3-210ENST00000540975 DEFB109BQ30KR1 87 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms