RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 MGAQ8IWI9 3026 aa4.51□□□□□ -1.69
USP28-207ENST00000538475 PRM2P04554 102 aa4.5□□□□□ -1.69
USP28-207ENST00000538475 UBE2BP63146 152 aa4.5□□□□□ -1.69
USP28-207ENST00000538475 DEFB112Q30KQ8 113 aa4.5□□□□□ -1.69
USP28-207ENST00000538475 FAM229BQ4G0N7 80 aa4.5□□□□□ -1.69
USP28-207ENST00000538475 DMXL2Q8TDJ6 3036 aa4.49□□□□□ -1.69
USP28-207ENST00000538475 IGKV3OR2-268A0A0C4DH90 116 aa4.49□□□□□ -1.69
USP28-207ENST00000538475 H3BPC8 53 aa4.49□□□□□ -1.69
USP28-207ENST00000538475 M0R2N4 97 aa4.49□□□□□ -1.69
USP28-207ENST00000538475 ZNF73O43830 326 aaPredicted RBP4.49□□□□□ -1.69
USP28-207ENST00000538475 LIMD2Q9BT23 127 aa4.49□□□□□ -1.69
USP28-207ENST00000538475 HRNRQ86YZ3 2850 aaPredicted RBP4.49□□□□□ -1.69
USP28-207ENST00000538475 MYO15AQ9UKN7 3530 aa4.49□□□□□ -1.69
USP28-207ENST00000538475 IGLV5-48A0A075B6I7 105 aa4.48□□□□□ -1.69
USP28-207ENST00000538475 ETDCA0A1B0GVM5 59 aa4.48□□□□□ -1.69
USP28-207ENST00000538475 NDUFS5O43920 106 aa4.48□□□□□ -1.69
USP28-207ENST00000538475 PRR3P79522 188 aaKnown RBP4.48□□□□□ -1.69
USP28-207ENST00000538475 C10orf99Q6UWK7 81 aa4.48□□□□□ -1.69
USP28-207ENST00000538475 DEFB123Q8N688 67 aa4.48□□□□□ -1.69
USP28-207ENST00000538475 SPANXA2-OT1Q8N9U9 137 aa4.48□□□□□ -1.69
USP28-207ENST00000538475 CHCHD10Q8WYQ3 142 aaPredicted RBP4.48□□□□□ -1.69
USP28-207ENST00000538475 CCL19Q99731 98 aa4.48□□□□□ -1.69
USP28-207ENST00000538475 PRO0255Q9UI72 69 aa4.48□□□□□ -1.69
USP28-207ENST00000538475 M0R378 163 aa4.47□□□□□ -1.69
USP28-207ENST00000538475 VPREB1P12018 145 aa4.47□□□□□ -1.69
USP28-207ENST00000538475 UBE2AP49459 152 aa4.47□□□□□ -1.69
USP28-207ENST00000538475 Q6ZRP5 223 aa4.47□□□□□ -1.69
USP28-207ENST00000538475 CSNK1G2-AS1Q8NCQ2 148 aa4.47□□□□□ -1.69
USP28-207ENST00000538475 C1orf64Q8NEQ6 169 aa4.47□□□□□ -1.69
USP28-207ENST00000538475 C2CD3Q4AC94 2353 aa4.47□□□□□ -1.69
USP28-207ENST00000538475 GVINP1Q7Z2Y8 2422 aa4.46□□□□□ -1.69
USP28-207ENST00000538475 WNK1Q9H4A3 2382 aa4.46□□□□□ -1.7
USP28-207ENST00000538475 MRPL55Q7Z7F7 128 aaKnown RBP4.46□□□□□ -1.7
USP28-207ENST00000538475 HIGD2AQ9BW72 106 aa4.46□□□□□ -1.7
USP28-207ENST00000538475 BDP1A6H8Y1 2624 aa4.45□□□□□ -1.7
USP28-207ENST00000538475 TRAV22A0A0B4J277 110 aa4.45□□□□□ -1.7
USP28-207ENST00000538475 PSCAO43653 123 aa4.45□□□□□ -1.7
USP28-207ENST00000538475 GIG44P09565 113 aaPredicted RBP4.45□□□□□ -1.7
USP28-207ENST00000538475 REG3AQ06141 175 aa4.45□□□□□ -1.7
USP28-207ENST00000538475 SPAG11BQ08648 103 aa4.45□□□□□ -1.7
USP28-207ENST00000538475 ATP11AUNQ6ZP68 121 aa4.45□□□□□ -1.7
USP28-207ENST00000538475 Q9BRP9 147 aa4.45□□□□□ -1.7
USP28-207ENST00000538475 NOTCH3Q9UM47 2321 aa4.45□□□□□ -1.7
USP28-207ENST00000538475 DCHS2Q6V1P9 2916 aa4.45□□□□□ -1.7
USP28-207ENST00000538475 AKAP13Q12802 2813 aa4.45□□□□□ -1.7
USP28-207ENST00000538475 EGFEM1PQ0D2K5 195 aa4.44□□□□□ -1.7
USP28-207ENST00000538475 SCXQ7RTU7 201 aa4.44□□□□□ -1.7
USP28-207ENST00000538475 KTN1-AS1Q86SY8 53 aa4.44□□□□□ -1.7
USP28-207ENST00000538475 LINC00269Q8N2A0 174 aa4.44□□□□□ -1.7
USP28-207ENST00000538475 LRBAP50851 2863 aa4.44□□□□□ -1.7
USP28-207ENST00000538475 CYSRT1A8MQ03 144 aa4.43□□□□□ -1.7
USP28-207ENST00000538475 HCG22E2RYF7 251 aa4.43□□□□□ -1.7
USP28-207ENST00000538475 PHF5AQ7RTV0 110 aaKnown RBP4.43□□□□□ -1.7
USP28-207ENST00000538475 Q8NDZ9 215 aa4.43□□□□□ -1.7
USP28-207ENST00000538475 LINC01006Q8NI28 216 aa4.43□□□□□ -1.7
USP28-207ENST00000538475 SPRR4Q96PI1 79 aa4.43□□□□□ -1.7
USP28-207ENST00000538475 KCNQ1DNQ9H478 68 aa4.43□□□□□ -1.7
USP28-207ENST00000538475 PRR34Q9NV39 138 aa4.43□□□□□ -1.7
USP28-207ENST00000538475 DHRS4-AS1Q9P1J3 65 aa4.43□□□□□ -1.7
USP28-207ENST00000538475 MP68P56378 58 aa4.42□□□□□ -1.7
USP28-207ENST00000538475 SYCNQ0VAF6 134 aa4.42□□□□□ -1.7
USP28-207ENST00000538475 DEFB136Q30KP8 78 aa4.42□□□□□ -1.7
USP28-207ENST00000538475 KPRPQ5T749 579 aaPredicted RBP4.42□□□□□ -1.7
USP28-207ENST00000538475 UNQ6190/PRO20217Q6UXQ8 127 aa4.42□□□□□ -1.7
USP28-207ENST00000538475 ADGRG4Q8IZF6 3080 aa4.42□□□□□ -1.7
USP28-207ENST00000538475 EYSQ5T1H1 3165 aa4.41□□□□□ -1.7
USP28-207ENST00000538475 NBASA2RRP1 2371 aa4.41□□□□□ -1.7
USP28-207ENST00000538475 ANGP03950 147 aaKnown RBP4.41□□□□□ -1.7
USP28-207ENST00000538475 C9orf116Q5BN46 136 aaPredicted RBP4.41□□□□□ -1.7
USP28-207ENST00000538475 LELP1Q5T871 98 aa4.41□□□□□ -1.7
USP28-207ENST00000538475 SMIM29Q86T20 159 aa4.41□□□□□ -1.7
USP28-207ENST00000538475 Q8NBF4 154 aa4.41□□□□□ -1.7
USP28-207ENST00000538475 B9D2Q9BPU9 175 aa4.41□□□□□ -1.7
USP28-207ENST00000538475 LINC00588Q9Y4M8 146 aa4.41□□□□□ -1.7
USP28-207ENST00000538475 LOC400499M0QZD8 3231 aa4.41□□□□□ -1.7
USP28-207ENST00000538475 CEP295Q9C0D2 2601 aa4.41□□□□□ -1.7
USP28-207ENST00000538475 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.4□□□□□ -1.71
USP28-207ENST00000538475 LOC101927531A0A1B0GV80 90 aa4.4□□□□□ -1.71
USP28-207ENST00000538475 IGLV1-51P01701 117 aa4.4□□□□□ -1.71
USP28-207ENST00000538475 KRTAP10-11P60412 298 aa4.4□□□□□ -1.71
USP28-207ENST00000538475 C10orf25Q5T742 122 aa4.4□□□□□ -1.71
USP28-207ENST00000538475 C18orf65Q6ZTR6 163 aa4.4□□□□□ -1.71
USP28-207ENST00000538475 RIF1Q5UIP0 2472 aaKnown RBP4.39□□□□□ -1.71
USP28-207ENST00000538475 ZNF292O60281 2723 aa4.39□□□□□ -1.71
USP28-207ENST00000538475 WDFY4Q6ZS81 3184 aa4.39□□□□□ -1.71
USP28-207ENST00000538475 SPG11Q96JI7 2443 aa4.39□□□□□ -1.71
USP28-207ENST00000538475 Q5VV11 94 aa4.39□□□□□ -1.71
USP28-207ENST00000538475 Q75L30 129 aa4.39□□□□□ -1.71
USP28-207ENST00000538475 C6orf48Q9UBA6 75 aa4.39□□□□□ -1.71
USP28-207ENST00000538475 Q8N9L7 120 aa4.38□□□□□ -1.71
USP28-207ENST00000538475 ATRXP46100 2492 aa4.38□□□□□ -1.71
USP28-207ENST00000538475 A0A087X002 238 aa4.37□□□□□ -1.71
USP28-207ENST00000538475 A8MUN3 132 aa4.37□□□□□ -1.71
USP28-207ENST00000538475 PSPHP1O15172 72 aa4.37□□□□□ -1.71
USP28-207ENST00000538475 IGKV2-30P06310 120 aa4.37□□□□□ -1.71
USP28-207ENST00000538475 Q8N377 158 aa4.37□□□□□ -1.71
USP28-207ENST00000538475 Q8N9P0 234 aaPredicted RBP4.37□□□□□ -1.71
USP28-207ENST00000538475 LINC00208Q96KT6 92 aa4.37□□□□□ -1.71
USP28-207ENST00000538475 KLK12Q9UKR0 248 aa4.37□□□□□ -1.71
USP28-207ENST00000538475 DCHS1Q96JQ0 3298 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms