RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 MYMXA0A1B0GTQ4 84 aa13.95□□□□□ -0.18
SFSWAP-204ENST00000535399 J3QQQ9 107 aa13.95□□□□□ -0.18
SFSWAP-204ENST00000535399 OXTP01178 125 aa13.95□□□□□ -0.18
SFSWAP-204ENST00000535399 LINC00158P58513 81 aa13.95□□□□□ -0.18
SFSWAP-204ENST00000535399 MRPL55Q7Z7F7 128 aaKnown RBP13.95□□□□□ -0.18
SFSWAP-204ENST00000535399 KRTDAPP60985 99 aa13.94□□□□□ -0.18
SFSWAP-204ENST00000535399 SPINK6Q6UWN8 80 aa13.94□□□□□ -0.18
SFSWAP-204ENST00000535399 A0A0U1RRA0 63 aa13.93□□□□□ -0.18
SFSWAP-204ENST00000535399 SMIM13P0DJ93 91 aa13.93□□□□□ -0.18
SFSWAP-204ENST00000535399 E9PLD3 99 aa13.92□□□□□ -0.18
SFSWAP-204ENST00000535399 VPREB1P12018 145 aa13.92□□□□□ -0.18
SFSWAP-204ENST00000535399 MEIG1Q5JSS6 88 aa13.92□□□□□ -0.18
SFSWAP-204ENST00000535399 HERC1Q15751 4861 aa13.92□□□□□ -0.18
SFSWAP-204ENST00000535399 J3QL48 77 aa13.91□□□□□ -0.18
SFSWAP-204ENST00000535399 IGLV7-43P04211 117 aa13.91□□□□□ -0.18
SFSWAP-204ENST00000535399 Q8NDZ9 215 aa13.91□□□□□ -0.18
SFSWAP-204ENST00000535399 LINC00167Q96N53 147 aa13.91□□□□□ -0.18
SFSWAP-204ENST00000535399 LGALS3P17931 250 aaKnown RBP13.9□□□□□ -0.18
SFSWAP-204ENST00000535399 LINC00587B1AMM8 73 aa13.89□□□□□ -0.19
SFSWAP-204ENST00000535399 NMUP48645 174 aa13.89□□□□□ -0.19
SFSWAP-204ENST00000535399 HIST3H2BBQ8N257 126 aa13.89□□□□□ -0.19
SFSWAP-204ENST00000535399 NKAPP1Q8N9T2 125 aa13.89□□□□□ -0.19
SFSWAP-204ENST00000535399 GAGE10A6NGK3 116 aa13.88□□□□□ -0.19
SFSWAP-204ENST00000535399 MIR7-3HGQ8N6C7 128 aa13.88□□□□□ -0.19
SFSWAP-204ENST00000535399 RPL24P83731 157 aaKnown RBP13.87□□□□□ -0.19
SFSWAP-204ENST00000535399 RPL37AP8A6NKH3 93 aa13.86□□□□□ -0.19
SFSWAP-204ENST00000535399 HIST1H2BLQ99880 126 aa13.85□□□□□ -0.19
SFSWAP-204ENST00000535399 C20orf202A1L168 122 aa13.84□□□□□ -0.19
SFSWAP-204ENST00000535399 S100A6P06703 90 aa13.83□□□□□ -0.2
SFSWAP-204ENST00000535399 MT1HL1P0DM35 61 aa13.82□□□□□ -0.2
SFSWAP-204ENST00000535399 IGKV2D-26A0A0A0MRZ7 120 aa13.81□□□□□ -0.2
SFSWAP-204ENST00000535399 S100A2P29034 98 aa13.81□□□□□ -0.2
SFSWAP-204ENST00000535399 REG3GQ6UW15 175 aa13.81□□□□□ -0.2
SFSWAP-204ENST00000535399 A0A0J9YXY3 114 aa13.8□□□□□ -0.2
SFSWAP-204ENST00000535399 BOD1L2Q8IYS8 172 aa13.8□□□□□ -0.2
SFSWAP-204ENST00000535399 DAND5Q8N907 189 aa13.8□□□□□ -0.2
SFSWAP-204ENST00000535399 DIRC1Q969H9 104 aa13.8□□□□□ -0.2
SFSWAP-204ENST00000535399 IGLV1-50A0A075B6I6 118 aa13.79□□□□□ -0.2
SFSWAP-204ENST00000535399 BCE1O60756 84 aa13.79□□□□□ -0.2
SFSWAP-204ENST00000535399 LINC01600Q96MT4 127 aa13.79□□□□□ -0.2
SFSWAP-204ENST00000535399 IGKV2-28A0A075B6P5 120 aa13.78□□□□□ -0.2
SFSWAP-204ENST00000535399 LOC107984156A0A0G2JMH3 177 aa13.78□□□□□ -0.2
SFSWAP-204ENST00000535399 IGKV2D-28P01615 120 aa13.78□□□□□ -0.2
SFSWAP-204ENST00000535399 ARL17AQ8IVW1 177 aa13.78□□□□□ -0.2
SFSWAP-204ENST00000535399 ATOH7Q8N100 152 aa13.78□□□□□ -0.2
SFSWAP-204ENST00000535399 H0Y9J4 135 aa13.77□□□□□ -0.21
SFSWAP-204ENST00000535399 ZNF861PO60384 105 aa13.77□□□□□ -0.21
SFSWAP-204ENST00000535399 TNXBP22105 4242 aa13.77□□□□□ -0.21
SFSWAP-204ENST00000535399 SNRPEP62304 92 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-204ENST00000535399 M0R378 163 aa13.76□□□□□ -0.21
SFSWAP-204ENST00000535399 TTTY13Q9BZ97 58 aa13.76□□□□□ -0.21
SFSWAP-204ENST00000535399 AKR1D1P51857 326 aa13.75□□□□□ -0.21
SFSWAP-204ENST00000535399 ANKRD39Q53RE8 183 aa13.75□□□□□ -0.21
SFSWAP-204ENST00000535399 ADAMTSL4-AS1Q5T5F5 129 aa13.75□□□□□ -0.21
SFSWAP-204ENST00000535399 ZNF815PA8K554 130 aa13.74□□□□□ -0.21
SFSWAP-204ENST00000535399 C5orf52A6NGY3 159 aa13.73□□□□□ -0.21
SFSWAP-204ENST00000535399 LITAFQ99732 161 aa13.73□□□□□ -0.21
SFSWAP-204ENST00000535399 TMEM238C9JI98 176 aa13.72□□□□□ -0.21
SFSWAP-204ENST00000535399 NCR3O14931 201 aa13.72□□□□□ -0.21
SFSWAP-204ENST00000535399 RPL28P46779 137 aaKnown RBP13.71□□□□□ -0.21
SFSWAP-204ENST00000535399 SOSTDC1Q6X4U4 206 aa13.71□□□□□ -0.21
SFSWAP-204ENST00000535399 KRTAP13-1Q8IUC0 172 aa13.71□□□□□ -0.21
SFSWAP-204ENST00000535399 EIF4EBP3O60516 100 aaPredicted RBP13.7□□□□□ -0.22
SFSWAP-204ENST00000535399 TIMM17BO60830 172 aa13.7□□□□□ -0.22
SFSWAP-204ENST00000535399 TMEM126AQ9H061 195 aa13.7□□□□□ -0.22
SFSWAP-204ENST00000535399 KRTAP10-8P60410 259 aa13.69□□□□□ -0.22
SFSWAP-204ENST00000535399 KRTAP1-4P0C5Y4 121 aa13.68□□□□□ -0.22
SFSWAP-204ENST00000535399 MIEN1Q9BRT3 115 aa13.68□□□□□ -0.22
SFSWAP-204ENST00000535399 UBE2AP49459 152 aa13.67□□□□□ -0.22
SFSWAP-204ENST00000535399 NPC2P61916 151 aa13.66□□□□□ -0.22
SFSWAP-204ENST00000535399 TRBV10-2A0A0K0K1G8 114 aa13.65□□□□□ -0.22
SFSWAP-204ENST00000535399 NDUFC2O95298 119 aa13.65□□□□□ -0.22
SFSWAP-204ENST00000535399 TRBV10-3A0A0K0K1G6 114 aa13.64□□□□□ -0.23
SFSWAP-204ENST00000535399 FAM19A1Q7Z5A9 133 aa13.64□□□□□ -0.23
SFSWAP-204ENST00000535399 PCP2Q8IVA1 136 aa13.64□□□□□ -0.23
SFSWAP-204ENST00000535399 KCNQ1DNQ9H478 68 aa13.64□□□□□ -0.23
SFSWAP-204ENST00000535399 SPANXB1Q9NS25 103 aaPredicted RBP13.64□□□□□ -0.23
SFSWAP-204ENST00000535399 PRYO14603 147 aa13.63□□□□□ -0.23
SFSWAP-204ENST00000535399 LINC00308Q8TCZ7 52 aa13.63□□□□□ -0.23
SFSWAP-204ENST00000535399 PRLHP81277 87 aa13.62□□□□□ -0.23
SFSWAP-204ENST00000535399 SPRR1AP35321 89 aa13.6□□□□□ -0.23
SFSWAP-204ENST00000535399 SCGB1D4Q6XE38 83 aa13.6□□□□□ -0.23
SFSWAP-204ENST00000535399 PRR26Q8N8Z3 221 aa13.6□□□□□ -0.23
SFSWAP-204ENST00000535399 DDTP30046 118 aa13.59□□□□□ -0.23
SFSWAP-204ENST00000535399 HSBP1L1C9JCN9 74 aa13.58□□□□□ -0.24
SFSWAP-204ENST00000535399 SCGB1D1O95968 90 aa13.58□□□□□ -0.24
SFSWAP-204ENST00000535399 SPANXDQ9BXN6 97 aa13.58□□□□□ -0.24
SFSWAP-204ENST00000535399 SPANXCQ9NY87 97 aa13.58□□□□□ -0.24
SFSWAP-204ENST00000535399 KRTAP4-16G5E9R7 235 aaPredicted RBP13.57□□□□□ -0.24
SFSWAP-204ENST00000535399 IGLV6-57P01721 117 aa13.57□□□□□ -0.24
SFSWAP-204ENST00000535399 LINC00337Q8N6G1 96 aa13.57□□□□□ -0.24
SFSWAP-204ENST00000535399 S100A7L2Q5SY68 101 aa13.54□□□□□ -0.24
SFSWAP-204ENST00000535399 HMCN2Q8NDA2 5059 aa13.52□□□□□ -0.24
SFSWAP-204ENST00000535399 S100A12P80511 92 aa13.52□□□□□ -0.25
SFSWAP-204ENST00000535399 ETDCA0A1B0GVM5 59 aa13.51□□□□□ -0.25
SFSWAP-204ENST00000535399 Q6ZVH6 145 aa13.51□□□□□ -0.25
SFSWAP-204ENST00000535399 HIGD2AQ9BW72 106 aa13.51□□□□□ -0.25
SFSWAP-204ENST00000535399 IFITM1P13164 125 aa13.5□□□□□ -0.25
SFSWAP-204ENST00000535399 PPDPFQ9H3Y8 114 aa13.5□□□□□ -0.25
SFSWAP-204ENST00000535399 ANAPC11Q9NYG5 84 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms