RNA–Protein interactions for RNA: ENST00000533961.1

RDX-215, Transcript of radixin, human

TSL 2

Gene RDX, Length 771 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RDX-215	ENST00000533961	CD163L1	Q9NR16	1453 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961		A0A1B0GU69	56 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	LINC00959	A0A1B0GUT2	108 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961		A0A1B0GUT8	65 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	GNGT1	P63211	74 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	COX6A2	Q02221	97 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	KRTAP21-1	Q3LI58	79 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	ATP5EP2	Q5VTU8	51 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	C18orf32	Q8TCD1	76 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	TP53AIP1	Q9HCN2	124 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	FAM208B	Q5VWN6	2430 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	IQGAP3	Q86VI3	1631 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	CIC	Q96RK0	1608 aa	Predicted RBP	0.38	□□□□□ -2.35
RDX-215	ENST00000533961	UGGT2	Q9NYU1	1516 aa		0.38	□□□□□ -2.35
RDX-215	ENST00000533961	COL14A1	Q05707	1796 aa	Known RBP	0.37	□□□□□ -2.35
RDX-215	ENST00000533961	ZNF831	Q5JPB2	1677 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	CFAP43	Q8NDM7	1665 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	ASXL3	Q9C0F0	2248 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	ADAMTS12	P58397	1594 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	PKD1L2	Q7Z442	2459 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	TTC28	Q96AY4	2481 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	FRAS1	Q86XX4	4008 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	TSC2	P49815	1807 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961		H3BUT2	72 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	NDUFB1	O75438	58 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	HMGA1	P17096	107 aa	Known RBP	0.37	□□□□□ -2.35
RDX-215	ENST00000533961	PIGY	Q3MUY2	71 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	PARP4	Q9UKK3	1724 aa	Known RBP	0.37	□□□□□ -2.35
RDX-215	ENST00000533961	USP32	Q8NFA0	1604 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	EIF2AK4	Q9P2K8	1649 aa	Known RBP	0.37	□□□□□ -2.35
RDX-215	ENST00000533961	ERICH3	Q5RHP9	1530 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	LRRC7	Q96NW7	1537 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	BCOR	Q6W2J9	1755 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	MEGF8	Q7Z7M0	2845 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	PLCH1	Q4KWH8	1693 aa		0.37	□□□□□ -2.35
RDX-215	ENST00000533961	AHCTF1	Q8WYP5	2266 aa		0.36	□□□□□ -2.35
RDX-215	ENST00000533961	LCE6A	A0A183	80 aa		0.36	□□□□□ -2.35
RDX-215	ENST00000533961	CFD	P00746	253 aa	Predicted RBP	0.36	□□□□□ -2.35
RDX-215	ENST00000533961	SMCO4	Q9NRQ5	59 aa		0.36	□□□□□ -2.35
RDX-215	ENST00000533961	ANKRD50	Q9ULJ7	1429 aa		0.36	□□□□□ -2.35
RDX-215	ENST00000533961	ITSN1	Q15811	1721 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961	UBR3	Q6ZT12	1888 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961	DUOX2	Q9NRD8	1548 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961	PREX1	Q8TCU6	1659 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961		K7EQZ3	153 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961	PDCD5	O14737	125 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961		Q5VSD8	79 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961		Q8IZM0	81 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961	USMG5	Q96IX5	58 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961	PRO0255	Q9UI72	69 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961	CLIP1	P30622	1438 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961	DOT1L	Q8TEK3	1739 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961	MROH1	Q8NDA8	1641 aa		0.35	□□□□□ -2.35
RDX-215	ENST00000533961	WIZ	O95785	1651 aa		0.34	□□□□□ -2.35
RDX-215	ENST00000533961	NHS	Q6T4R5	1651 aa		0.34	□□□□□ -2.35
RDX-215	ENST00000533961	UMAD1	C9J7I0	102 aa		0.34	□□□□□ -2.36
RDX-215	ENST00000533961	PHGR1	C9JFL3	82 aa		0.34	□□□□□ -2.36
RDX-215	ENST00000533961	SMIM13	P0DJ93	91 aa		0.34	□□□□□ -2.36
RDX-215	ENST00000533961	COX7B	P24311	80 aa		0.34	□□□□□ -2.36
RDX-215	ENST00000533961	IFI27	P40305	119 aa	Predicted RBP	0.34	□□□□□ -2.36
RDX-215	ENST00000533961	NWD1	Q149M9	1564 aa		0.34	□□□□□ -2.36
RDX-215	ENST00000533961	DEFB112	Q30KQ8	113 aa		0.34	□□□□□ -2.36
RDX-215	ENST00000533961	INO80	Q9ULG1	1556 aa	Predicted RBP	0.34	□□□□□ -2.36
RDX-215	ENST00000533961	EFCAB5	A4FU69	1503 aa		0.33	□□□□□ -2.36
RDX-215	ENST00000533961	FMN2	Q9NZ56	1722 aa		0.33	□□□□□ -2.36
RDX-215	ENST00000533961	STAB1	Q9NY15	2570 aa		0.33	□□□□□ -2.36
RDX-215	ENST00000533961	TRAV21	A0A0B4J279	112 aa		0.33	□□□□□ -2.36
RDX-215	ENST00000533961	SMIM31	A0A1B0GVY4	71 aa		0.33	□□□□□ -2.36
RDX-215	ENST00000533961	COX6B1	P14854	86 aa		0.33	□□□□□ -2.36
RDX-215	ENST00000533961	KRTAP20-1	Q3LI63	56 aa		0.33	□□□□□ -2.36
RDX-215	ENST00000533961	HEPN1	Q6WQI6	88 aa		0.33	□□□□□ -2.36
RDX-215	ENST00000533961	NES	P48681	1621 aa		0.33	□□□□□ -2.36
RDX-215	ENST00000533961	ASXL1	Q8IXJ9	1541 aa		0.33	□□□□□ -2.36
RDX-215	ENST00000533961	CDC42BPG	Q6DT37	1551 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	CELSR2	Q9HCU4	2923 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	ABCA9	Q8IUA7	1624 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	RNF17	Q9BXT8	1623 aa	Known RBP	0.32	□□□□□ -2.36
RDX-215	ENST00000533961	FXYD6-FXYD2	A0A087WZ82	144 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	SPTY2D1-AS1	A0A0U1RR47	76 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	CPSF4L	A6NMK7	179 aa	Known RBP	0.32	□□□□□ -2.36
RDX-215	ENST00000533961	IFI6	P09912	130 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	COX8A	P10176	69 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	RPL38	P63173	70 aa	Known RBP	0.32	□□□□□ -2.36
RDX-215	ENST00000533961	DEFA5	Q01523	94 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961		Q5BKY6	102 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	COX6B2	Q6YFQ2	88 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	GAFA1	Q96PS6	74 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	CRIPT	Q9P021	101 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	NCOR2	Q9Y618	2525 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	CACNA1H	O95180	2353 aa		0.32	□□□□□ -2.36
RDX-215	ENST00000533961	THOC2	Q8NI27	1593 aa	Known RBP	0.32	□□□□□ -2.36
RDX-215	ENST00000533961	CHD9	Q3L8U1	2897 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961	URB1	O60287	2271 aa	Known RBP	0.31	□□□□□ -2.36
RDX-215	ENST00000533961	CCDC180	Q9P1Z9	1646 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961	SSPO	A2VEC9	5147 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961	TNRC6C	Q9HCJ0	1690 aa	Known RBP	0.31	□□□□□ -2.36
RDX-215	ENST00000533961	RALGAPB	Q86X10	1494 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961	ANK2	Q01484	3957 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961	RICTOR	Q6R327	1708 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961		A0A087WXM4	84 aa		0.31	□□□□□ -2.36

Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms