RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	HIST1H2BJ	P06899	126 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	KRTAP1-4	P0C5Y4	121 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	HIST1H2BO	P23527	126 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	HIST1H2BB	P33778	126 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	HIST1H2BD	P58876	126 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	HIST1H2BC	P62807	126 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	HIST2H2BE	Q16778	126 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	HIST1H2BH	Q93079	126 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	HIST1H2BN	Q99877	126 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	HIST1H2BM	Q99879	126 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	NDUFA12	Q9UI09	145 aa		13.82	□□□□□ -0.2
CAPN1-222	ENST00000532285	IGLV1-50	A0A075B6I6	118 aa		13.81	□□□□□ -0.2
CAPN1-222	ENST00000532285		A0A0U1RRA0	63 aa		13.81	□□□□□ -0.2
CAPN1-222	ENST00000532285	ATP6V1G1	O75348	118 aa		13.81	□□□□□ -0.2
CAPN1-222	ENST00000532285	MAP1LC3C	Q9BXW4	147 aa		13.81	□□□□□ -0.2
CAPN1-222	ENST00000532285	IGKV2-28	A0A075B6P5	120 aa		13.8	□□□□□ -0.2
CAPN1-222	ENST00000532285	MYMX	A0A1B0GTQ4	84 aa		13.8	□□□□□ -0.2
CAPN1-222	ENST00000532285	LINC00587	B1AMM8	73 aa		13.8	□□□□□ -0.2
CAPN1-222	ENST00000532285	LEPROT	O15243	131 aa		13.8	□□□□□ -0.2
CAPN1-222	ENST00000532285	IGKV2D-28	P01615	120 aa		13.8	□□□□□ -0.2
CAPN1-222	ENST00000532285	SMIM13	P0DJ93	91 aa		13.8	□□□□□ -0.2
CAPN1-222	ENST00000532285	MEIG1	Q5JSS6	88 aa		13.8	□□□□□ -0.2
CAPN1-222	ENST00000532285	IGKC	P01834	107 aa		13.79	□□□□□ -0.2
CAPN1-222	ENST00000532285	PLEKHB2	Q96CS7	222 aa		13.79	□□□□□ -0.2
CAPN1-222	ENST00000532285	HERVK_113	P61574	105 aa		13.78	□□□□□ -0.2
CAPN1-222	ENST00000532285		Q8NDZ9	215 aa		13.78	□□□□□ -0.2
CAPN1-222	ENST00000532285	PMCHL2	Q9BQD1	86 aa		13.78	□□□□□ -0.2
CAPN1-222	ENST00000532285	UBE2A	P49459	152 aa		13.76	□□□□□ -0.21
CAPN1-222	ENST00000532285	TSPEAR-AS2	P59090	65 aa		13.75	□□□□□ -0.21
CAPN1-222	ENST00000532285	MIR7-3HG	Q8N6C7	128 aa		13.75	□□□□□ -0.21
CAPN1-222	ENST00000532285		J3QQQ9	107 aa		13.74	□□□□□ -0.21
CAPN1-222	ENST00000532285	RPL13A	P40429	203 aa	Known RBP	13.74	□□□□□ -0.21
CAPN1-222	ENST00000532285	KRTAP13-1	Q8IUC0	172 aa		13.74	□□□□□ -0.21
CAPN1-222	ENST00000532285	TMEM126A	Q9H061	195 aa		13.73	□□□□□ -0.21
CAPN1-222	ENST00000532285		M0R378	163 aa		13.72	□□□□□ -0.21
CAPN1-222	ENST00000532285	NMU	P48645	174 aa		13.72	□□□□□ -0.21
CAPN1-222	ENST00000532285	BOD1L2	Q8IYS8	172 aa		13.72	□□□□□ -0.21
CAPN1-222	ENST00000532285	TMEM238	C9JI98	176 aa		13.71	□□□□□ -0.21
CAPN1-222	ENST00000532285	SYS1-DBNDD2	H3BUS1	97 aa		13.71	□□□□□ -0.21
CAPN1-222	ENST00000532285	LGALS3	P17931	250 aa	Known RBP	13.71	□□□□□ -0.21
CAPN1-222	ENST00000532285	FAM19A1	Q7Z5A9	133 aa		13.69	□□□□□ -0.22
CAPN1-222	ENST00000532285	IGKV2D-26	A0A0A0MRZ7	120 aa		13.66	□□□□□ -0.22
CAPN1-222	ENST00000532285	PRLH	P81277	87 aa		13.66	□□□□□ -0.22
CAPN1-222	ENST00000532285	COA6	Q5JTJ3	125 aa	Known RBP	13.66	□□□□□ -0.22
CAPN1-222	ENST00000532285	PET117	Q6UWS5	81 aa		13.66	□□□□□ -0.22
CAPN1-222	ENST00000532285	LOC107984156	A0A0G2JMH3	177 aa		13.65	□□□□□ -0.22
CAPN1-222	ENST00000532285		E9PLD3	99 aa		13.65	□□□□□ -0.22
CAPN1-222	ENST00000532285	LINC01545	Q5VT33	79 aa		13.65	□□□□□ -0.22
CAPN1-222	ENST00000532285	ARL17A	Q8IVW1	177 aa		13.65	□□□□□ -0.22
CAPN1-222	ENST00000532285	NCR3	O14931	201 aa		13.64	□□□□□ -0.23
CAPN1-222	ENST00000532285	CRYGA	P11844	174 aa		13.63	□□□□□ -0.23
CAPN1-222	ENST00000532285	DAND5	Q8N907	189 aa		13.63	□□□□□ -0.23
CAPN1-222	ENST00000532285		A0A087X002	238 aa		13.61	□□□□□ -0.23
CAPN1-222	ENST00000532285	PRY	O14603	147 aa		13.6	□□□□□ -0.23
CAPN1-222	ENST00000532285	C3orf79	P0CE67	100 aa		13.6	□□□□□ -0.23
CAPN1-222	ENST00000532285	MIEN1	Q9BRT3	115 aa		13.59	□□□□□ -0.23
CAPN1-222	ENST00000532285	KCNQ1DN	Q9H478	68 aa		13.59	□□□□□ -0.23
CAPN1-222	ENST00000532285	UBR4	Q5T4S7	5183 aa		13.59	□□□□□ -0.23
CAPN1-222	ENST00000532285		A0A0J9YXY3	114 aa		13.58	□□□□□ -0.24
CAPN1-222	ENST00000532285	FAM229B	Q4G0N7	80 aa		13.58	□□□□□ -0.24
CAPN1-222	ENST00000532285	ANAPC11	Q9NYG5	84 aa		13.58	□□□□□ -0.24
CAPN1-222	ENST00000532285	TYMSOS	Q8TAI1	123 aa		13.57	□□□□□ -0.24
CAPN1-222	ENST00000532285	TRBV10-3	A0A0K0K1G6	114 aa		13.56	□□□□□ -0.24
CAPN1-222	ENST00000532285	TRBV10-2	A0A0K0K1G8	114 aa		13.56	□□□□□ -0.24
CAPN1-222	ENST00000532285	KRTDAP	P60985	99 aa		13.56	□□□□□ -0.24
CAPN1-222	ENST00000532285	S100A12	P80511	92 aa		13.56	□□□□□ -0.24
CAPN1-222	ENST00000532285	HIGD2A	Q9BW72	106 aa		13.56	□□□□□ -0.24
CAPN1-222	ENST00000532285	SPRR1A	P35321	89 aa		13.55	□□□□□ -0.24
CAPN1-222	ENST00000532285	LINC00337	Q8N6G1	96 aa		13.55	□□□□□ -0.24
CAPN1-222	ENST00000532285	NDUFC2	O95298	119 aa		13.54	□□□□□ -0.24
CAPN1-222	ENST00000532285	S100A1	P23297	94 aa		13.54	□□□□□ -0.24
CAPN1-222	ENST00000532285	SPANXB1	Q9NS25	103 aa	Predicted RBP	13.54	□□□□□ -0.24
CAPN1-222	ENST00000532285	LRP2	P98164	4655 aa		13.53	□□□□□ -0.24
CAPN1-222	ENST00000532285	ADAMTSL4-AS1	Q5T5F5	129 aa		13.53	□□□□□ -0.24
CAPN1-222	ENST00000532285	DDT	P30046	118 aa		13.52	□□□□□ -0.25
CAPN1-222	ENST00000532285	KRTAP13-2	Q52LG2	175 aa		13.52	□□□□□ -0.25
CAPN1-222	ENST00000532285	ETDC	A0A1B0GVM5	59 aa		13.51	□□□□□ -0.25
CAPN1-222	ENST00000532285	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	13.51	□□□□□ -0.25
CAPN1-222	ENST00000532285	C20orf202	A1L168	122 aa		13.5	□□□□□ -0.25
CAPN1-222	ENST00000532285	TIMM17B	O60830	172 aa		13.49	□□□□□ -0.25
CAPN1-222	ENST00000532285	NPC2	P61916	151 aa		13.49	□□□□□ -0.25
CAPN1-222	ENST00000532285	SOSTDC1	Q6X4U4	206 aa		13.49	□□□□□ -0.25
CAPN1-222	ENST00000532285	ZNF815P	A8K554	130 aa		13.48	□□□□□ -0.25
CAPN1-222	ENST00000532285	S100A7L2	Q5SY68	101 aa		13.48	□□□□□ -0.25
CAPN1-222	ENST00000532285	EIF4EBP3	O60516	100 aa	Predicted RBP	13.47	□□□□□ -0.25
CAPN1-222	ENST00000532285	LITAF	Q99732	161 aa		13.47	□□□□□ -0.25
CAPN1-222	ENST00000532285	ZNF706	Q9Y5V0	76 aa	Predicted RBP	13.47	□□□□□ -0.25
CAPN1-222	ENST00000532285	TSPAN13	O95857	204 aa		13.46	□□□□□ -0.25
CAPN1-222	ENST00000532285	SPRR4	Q96PI1	79 aa		13.46	□□□□□ -0.25
CAPN1-222	ENST00000532285	IGLV6-57	P01721	117 aa		13.45	□□□□□ -0.26
CAPN1-222	ENST00000532285	AKR1D1	P51857	326 aa		13.45	□□□□□ -0.26
CAPN1-222	ENST00000532285		B5MCH6	92 aa		13.44	□□□□□ -0.26
CAPN1-222	ENST00000532285	LINC00308	Q8TCZ7	52 aa		13.44	□□□□□ -0.26
CAPN1-222	ENST00000532285	SMCR5	Q8TEV8	140 aa		13.44	□□□□□ -0.26
CAPN1-222	ENST00000532285	TTTY13	Q9BZ97	58 aa		13.44	□□□□□ -0.26
CAPN1-222	ENST00000532285	LINC00304	Q8N9R0	145 aa		13.41	□□□□□ -0.26
CAPN1-222	ENST00000532285	SPANXC	Q9NY87	97 aa		13.41	□□□□□ -0.26
CAPN1-222	ENST00000532285	PRR4	Q16378	134 aa		13.4	□□□□□ -0.26
CAPN1-222	ENST00000532285	TRAV23DV6	A0A075B6W5	121 aa		13.39	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 228.4 ms