RNA–Protein interactions for RNA: ENST00000509162.1

TOPBP1-207, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-207ENST00000509162 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.44□□□□□ -1.7
TOPBP1-207ENST00000509162 HIST1H2BHQ93079 126 aa4.44□□□□□ -1.7
TOPBP1-207ENST00000509162 HIST1H2BNQ99877 126 aa4.44□□□□□ -1.7
TOPBP1-207ENST00000509162 HIST1H2BMQ99879 126 aa4.44□□□□□ -1.7
TOPBP1-207ENST00000509162 TRAV12-1A0A0B4J245 112 aa4.43□□□□□ -1.7
TOPBP1-207ENST00000509162 TRBV30A0A0K0K1B3 111 aa4.43□□□□□ -1.7
TOPBP1-207ENST00000509162 NDUFC2-KCTD14E9PQ53 114 aa4.43□□□□□ -1.7
TOPBP1-207ENST00000509162 LBHQ53QV2 105 aaPredicted RBP4.43□□□□□ -1.7
TOPBP1-207ENST00000509162 PAPPA-AS1Q5QFB9 102 aa4.43□□□□□ -1.7
TOPBP1-207ENST00000509162 FAM19A5Q7Z5A7 132 aaPredicted RBP4.43□□□□□ -1.7
TOPBP1-207ENST00000509162 COX7B2Q8TF08 81 aa4.43□□□□□ -1.7
TOPBP1-207ENST00000509162 IFI27L1Q96BM0 104 aa4.43□□□□□ -1.7
TOPBP1-207ENST00000509162 GEMIN7Q9H840 131 aaKnown RBP4.43□□□□□ -1.7
TOPBP1-207ENST00000509162 TMEM223A0PJW6 202 aa4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 F8VRH5 84 aa4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 F8WDY8 70 aa4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 ATP6V1G1O75348 118 aa4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 ATP5LO75964 103 aa4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 KRTAP15-1Q3LI76 137 aa4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 BAGE3Q86Y29 109 aa4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 ZNF625Q96I27 306 aaPredicted RBP4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 PMCHL2Q9BQD1 86 aa4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 XAGE1AQ9HD64 81 aa4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 PAM16Q9Y3D7 125 aa4.42□□□□□ -1.7
TOPBP1-207ENST00000509162 LINC01549A6NIU2 74 aa4.41□□□□□ -1.7
TOPBP1-207ENST00000509162 KRTAP29-1A8MX34 341 aaPredicted RBP4.41□□□□□ -1.7
TOPBP1-207ENST00000509162 HSBP1O75506 76 aa4.41□□□□□ -1.7
TOPBP1-207ENST00000509162 G0S2P27469 103 aa4.41□□□□□ -1.7
TOPBP1-207ENST00000509162 NDUFA6P56556 154 aa4.41□□□□□ -1.7
TOPBP1-207ENST00000509162 PSORS1C2Q9UIG4 136 aa4.41□□□□□ -1.7
TOPBP1-207ENST00000509162 CHTOPQ9Y3Y2 248 aaKnown RBP4.41□□□□□ -1.7
TOPBP1-207ENST00000509162 RNF213Q63HN8 5207 aa4.4□□□□□ -1.7
TOPBP1-207ENST00000509162 M0QXV9 152 aa4.4□□□□□ -1.71
TOPBP1-207ENST00000509162 SEC11AP67812 179 aa4.4□□□□□ -1.71
TOPBP1-207ENST00000509162 SRSF9Q13242 221 aaKnown RBP eCLIP4.4□□□□□ -1.71
TOPBP1-207ENST00000509162 PACRGQ96M98 296 aaPredicted RBP4.4□□□□□ -1.71
TOPBP1-207ENST00000509162 LINC00474Q9P2X8 69 aa4.4□□□□□ -1.71
TOPBP1-207ENST00000509162 LPAP08519 4548 aa4.4□□□□□ -1.71
TOPBP1-207ENST00000509162 PRSS2P07478 247 aa4.39□□□□□ -1.71
TOPBP1-207ENST00000509162 COA6Q5JTJ3 125 aaKnown RBP4.39□□□□□ -1.71
TOPBP1-207ENST00000509162 H0Y8G0 127 aa4.38□□□□□ -1.71
TOPBP1-207ENST00000509162 LEPROTL1O95214 131 aa4.38□□□□□ -1.71
TOPBP1-207ENST00000509162 FABP4P15090 132 aa4.38□□□□□ -1.71
TOPBP1-207ENST00000509162 CXCL5P42830 114 aa4.38□□□□□ -1.71
TOPBP1-207ENST00000509162 CKS1BP61024 79 aa4.38□□□□□ -1.71
TOPBP1-207ENST00000509162 C6orf226Q5I0X4 101 aa4.38□□□□□ -1.71
TOPBP1-207ENST00000509162 TMEM170BQ5T4T1 132 aa4.38□□□□□ -1.71
TOPBP1-207ENST00000509162 C7orf33Q8WU49 177 aa4.38□□□□□ -1.71
TOPBP1-207ENST00000509162 IGLV5-37A0A075B6J1 123 aa4.37□□□□□ -1.71
TOPBP1-207ENST00000509162 H3BRM9 83 aa4.37□□□□□ -1.71
TOPBP1-207ENST00000509162 DPH3Q96FX2 82 aa4.37□□□□□ -1.71
TOPBP1-207ENST00000509162 ERG28Q9UKR5 140 aa4.37□□□□□ -1.71
TOPBP1-207ENST00000509162 PKIGQ9Y2B9 76 aa4.37□□□□□ -1.71
TOPBP1-207ENST00000509162 KRTAP1-4P0C5Y4 121 aa4.36□□□□□ -1.71
TOPBP1-207ENST00000509162 SND1-IT1Q9HBX3 110 aa4.36□□□□□ -1.71
TOPBP1-207ENST00000509162 C22orf24Q9Y442 160 aa4.36□□□□□ -1.71
TOPBP1-207ENST00000509162 IGKV2D-26A0A0A0MRZ7 120 aa4.35□□□□□ -1.71
TOPBP1-207ENST00000509162 SYS1-DBNDD2H3BUS1 97 aa4.35□□□□□ -1.71
TOPBP1-207ENST00000509162 IGLV7-43P04211 117 aa4.35□□□□□ -1.71
TOPBP1-207ENST00000509162 C3orf79P0CE67 100 aa4.35□□□□□ -1.71
TOPBP1-207ENST00000509162 PFN2P35080 140 aa4.35□□□□□ -1.71
TOPBP1-207ENST00000509162 C1orf137Q5JT78 98 aa4.35□□□□□ -1.71
TOPBP1-207ENST00000509162 LINC01545Q5VT33 79 aa4.35□□□□□ -1.71
TOPBP1-207ENST00000509162 KRTAP13-1Q8IUC0 172 aa4.35□□□□□ -1.71
TOPBP1-207ENST00000509162 TTTY13Q9BZ97 58 aa4.35□□□□□ -1.71
TOPBP1-207ENST00000509162 A0A0U1RRA0 63 aa4.34□□□□□ -1.71
TOPBP1-207ENST00000509162 OXTP01178 125 aa4.34□□□□□ -1.71
TOPBP1-207ENST00000509162 SMIM13P0DJ93 91 aa4.34□□□□□ -1.71
TOPBP1-207ENST00000509162 SOSTDC1Q6X4U4 206 aa4.34□□□□□ -1.71
TOPBP1-207ENST00000509162 LINC00167Q96N53 147 aa4.34□□□□□ -1.71
TOPBP1-207ENST00000509162 LEPROTO15243 131 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 DPM2O94777 84 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 IGKCP01834 107 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 MRPL55Q7Z7F7 128 aaKnown RBP4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 HIST3H2BBQ8N257 126 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 PRR26Q8N8Z3 221 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 DAND5Q8N907 189 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 LINC01600Q96MT4 127 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 LITAFQ99732 161 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 TP73-AS1Q9UF72 201 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 NDUFA12Q9UI09 145 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 HSPB8Q9UJY1 196 aa4.33□□□□□ -1.72
TOPBP1-207ENST00000509162 RPL37AP8A6NKH3 93 aa4.32□□□□□ -1.72
TOPBP1-207ENST00000509162 TMEM238C9JI98 176 aa4.32□□□□□ -1.72
TOPBP1-207ENST00000509162 H0Y9J4 135 aa4.32□□□□□ -1.72
TOPBP1-207ENST00000509162 PLNP26678 52 aa4.32□□□□□ -1.72
TOPBP1-207ENST00000509162 KRTAP10-8P60410 259 aa4.32□□□□□ -1.72
TOPBP1-207ENST00000509162 SPINK6Q6UWN8 80 aa4.32□□□□□ -1.72
TOPBP1-207ENST00000509162 MIR7-3HGQ8N6C7 128 aa4.32□□□□□ -1.72
TOPBP1-207ENST00000509162 MUC17Q685J3 4493 aa4.31□□□□□ -1.72
TOPBP1-207ENST00000509162 IGKV2-28A0A075B6P5 120 aa4.31□□□□□ -1.72
TOPBP1-207ENST00000509162 E9PLD3 99 aa4.31□□□□□ -1.72
TOPBP1-207ENST00000509162 J3QQQ9 107 aa4.31□□□□□ -1.72
TOPBP1-207ENST00000509162 M0R378 163 aa4.31□□□□□ -1.72
TOPBP1-207ENST00000509162 IGKV2D-28P01615 120 aa4.31□□□□□ -1.72
TOPBP1-207ENST00000509162 S100A1P23297 94 aa4.31□□□□□ -1.72
TOPBP1-207ENST00000509162 UBE2BP63146 152 aa4.31□□□□□ -1.72
TOPBP1-207ENST00000509162 PLEKHB2Q96CS7 222 aa4.31□□□□□ -1.72
TOPBP1-207ENST00000509162 A0A0J9YXY3 114 aa4.3□□□□□ -1.72
TOPBP1-207ENST00000509162 NCR3O14931 201 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms