RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 A0A0C4DFX4 3053 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 USP9YO00507 2555 aaPredicted RBP-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 EPG5Q9HCE0 2579 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 USP32Q8NFA0 1604 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 CICQ96RK0 1608 aaPredicted RBP-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 A0A1B0GU69 56 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 FAM24AA6NFZ4 105 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 SPINK4O60575 86 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 GNG11P61952 73 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 TROQ12816 1431 aaPredicted RBP-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 UBR3Q6ZT12 1888 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 DEFB107AQ8IZN7 70 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 FAM167A-AS1Q96KT0 104 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 SPRR2FQ96RM1 72 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 NXT2Q9NPJ8 142 aaKnown RBP-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 CDC42SE2Q9NRR3 84 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 SONP18583 2426 aaKnown RBP-0.35□□□□□ -2.46
HMGB1P28-201ENST00000507778 ZZEF1O43149 2961 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 DDX60LQ5H9U9 1706 aaKnown RBP-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 LAMA3Q16787 3333 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 EDC4Q6P2E9 1401 aaKnown RBP-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 NCOA3Q9Y6Q9 1424 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 CRYM-AS1A6NIL9 109 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 COX8AP10176 69 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 SNCAP37840 140 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 HEPN1Q6WQI6 88 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 C6orf201Q7Z4U5 140 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 TMEM263Q8WUH6 116 aaKnown RBP-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 SPRR4Q96PI1 79 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 PLCH1Q4KWH8 1693 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 LRRC7Q96NW7 1537 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 PPLO60437 1756 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 TMEM131LA2VDJ0 1609 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 MYO3AQ8NEV4 1616 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 PZPP20742 1482 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 MRC2Q9UBG0 1479 aa-0.35□□□□□ -2.47
HMGB1P28-201ENST00000507778 GOLGA4Q13439 2230 aaKnown RBP-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 AKAP13Q12802 2813 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 MAPKBP1O60336 1514 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 A0A0G2JND7 137 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 A0A1B0GV90 55 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 A0A1B0GWA3 101 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 H3BNG1 76 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 DLEU1O43261 78 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 TRAPPC2P0DI81 140 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 TRAPPC2BP0DI82 140 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 UBE2D3P61077 147 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 UBE2D2P62837 147 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 USMG5Q96IX5 58 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 MRPL34Q9BQ48 92 aaKnown RBP-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 PRO1933Q9H354 126 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 DPH3P1Q9H4G8 78 aa-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 TEP1Q99973 2627 aaKnown RBP-0.36□□□□□ -2.47
HMGB1P28-201ENST00000507778 KIAA1109Q2LD37 5005 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 TACC2O95359 2948 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 DMXL1Q9Y485 3027 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 ITPR3Q14573 2671 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 FAM135AQ9P2D6 1515 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 SPG11Q96JI7 2443 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 PARP4Q9UKK3 1724 aaKnown RBP-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 TRAV30A0A087WSZ9 112 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 H0YGG7 62 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 I3L3M4 83 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 WHAMMP3Q1A5X7 153 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 WFDC13Q8IUB5 93 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 C9orf62Q8N4C0 152 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 CCDC141Q6ZP82 1450 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 DNAH2Q9P225 4427 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 NRXN1Q9ULB1 1477 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 SAMD9Q5K651 1589 aa-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 PRRC2CQ9Y520 2896 aaKnown RBP-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 FASNP49327 2511 aaKnown RBP-0.37□□□□□ -2.47
HMGB1P28-201ENST00000507778 ABCC5O15440 1437 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 ANKRD50Q9ULJ7 1429 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 MYO18BQ8IUG5 2567 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 GCN1Q92616 2671 aaKnown RBP-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 EPPK1P58107 5090 aaKnown RBP-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 KALRNO60229 2985 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 TRIOO75962 3097 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 PLECQ15149 4684 aaKnown RBP-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 SPTY2D1-AS1A0A0U1RR47 76 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 hADV29S1A0JD25 119 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 H0Y9P7 68 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 GNGT1P63211 74 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 C12orf57Q99622 126 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 PRO1854Q9UHT4 67 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 IER3IP1Q9Y5U9 82 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 MLH3Q9UHC1 1453 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 CFAP43Q8NDM7 1665 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 RGPD8O14715 1765 aaPredicted RBP-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 RGPD5Q99666 1765 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 DNAH1Q9P2D7 4330 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 TRANK1O15050 2925 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 ITSN1Q15811 1721 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 RICTORQ6R327 1708 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 ZFYVE16Q7Z3T8 1539 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 SACSQ9NZJ4 4579 aa-0.38□□□□□ -2.47
HMGB1P28-201ENST00000507778 RELNP78509 3460 aa-0.39□□□□□ -2.47
HMGB1P28-201ENST00000507778 ARFGEF2Q9Y6D5 1785 aa-0.39□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 302.4 ms