RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 NDUFA1O15239 70 aa7.88□□□□□ -1.15
UPF3A-210ENST00000493727 TSPEAR-AS2P59090 65 aa7.88□□□□□ -1.15
UPF3A-210ENST00000493727 C2orf48Q96LS8 159 aa7.88□□□□□ -1.15
UPF3A-210ENST00000493727 IGKV2D-26A0A0A0MRZ7 120 aa7.87□□□□□ -1.15
UPF3A-210ENST00000493727 F8WDY8 70 aa7.87□□□□□ -1.15
UPF3A-210ENST00000493727 HAMPP81172 84 aa7.87□□□□□ -1.15
UPF3A-210ENST00000493727 KIAA0087Q14695 138 aa7.87□□□□□ -1.15
UPF3A-210ENST00000493727 NDUFA12Q9UI09 145 aa7.87□□□□□ -1.15
UPF3A-210ENST00000493727 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.86□□□□□ -1.15
UPF3A-210ENST00000493727 MYMXA0A1B0GTQ4 84 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 ZNF815PA8K554 130 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 SYCNQ0VAF6 134 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 SFTA2Q6UW10 78 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 C2orf82Q6UX34 121 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 CARD19Q96LW7 228 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 PKHD1L1Q86WI1 4243 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 MEIG1Q5JSS6 88 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 UNQ6190/PRO20217Q6UXQ8 127 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 Q6ZRU5 148 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 Q6ZSA8 131 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 ZNF625Q96I27 306 aaPredicted RBP7.84□□□□□ -1.15
UPF3A-210ENST00000493727 TTTY13Q9BZ97 58 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 TRBV30A0A0K0K1B3 111 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 HERV-K104P63124 156 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 C10orf25Q5T742 122 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 SCGB1D4Q6XE38 83 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 PCP2Q8IVA1 136 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 C12orf57Q99622 126 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 PKIGQ9Y2B9 76 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 KRTAP29-1A8MX34 341 aaPredicted RBP7.82□□□□□ -1.16
UPF3A-210ENST00000493727 CNBPP62633 177 aaKnown RBP7.82□□□□□ -1.16
UPF3A-210ENST00000493727 C14orf144Q96I85 54 aa7.82□□□□□ -1.16
UPF3A-210ENST00000493727 C6orf48Q9UBA6 75 aa7.82□□□□□ -1.16
UPF3A-210ENST00000493727 COX8AP10176 69 aa7.81□□□□□ -1.16
UPF3A-210ENST00000493727 LINC00587B1AMM8 73 aa7.8□□□□□ -1.16
UPF3A-210ENST00000493727 PFN2P35080 140 aa7.8□□□□□ -1.16
UPF3A-210ENST00000493727 C9orf116Q5BN46 136 aaPredicted RBP7.8□□□□□ -1.16
UPF3A-210ENST00000493727 SLC25A34Q6PIV7 304 aa7.8□□□□□ -1.16
UPF3A-210ENST00000493727 ERG28Q9UKR5 140 aa7.8□□□□□ -1.16
UPF3A-210ENST00000493727 A0A0J9YXY3 114 aa7.79□□□□□ -1.16
UPF3A-210ENST00000493727 A0A0U1RRA0 63 aa7.79□□□□□ -1.16
UPF3A-210ENST00000493727 LINC00158P58513 81 aa7.79□□□□□ -1.16
UPF3A-210ENST00000493727 RPL18AQ02543 176 aaKnown RBP7.79□□□□□ -1.16
UPF3A-210ENST00000493727 CIRBPQ14011 172 aaKnown RBP7.79□□□□□ -1.16
UPF3A-210ENST00000493727 LINC00518Q8N0U6 118 aa7.79□□□□□ -1.16
UPF3A-210ENST00000493727 SMIM13P0DJ93 91 aa7.78□□□□□ -1.16
UPF3A-210ENST00000493727 BOD1L2Q8IYS8 172 aa7.78□□□□□ -1.16
UPF3A-210ENST00000493727 PRO1933Q9H354 126 aa7.78□□□□□ -1.16
UPF3A-210ENST00000493727 LOC107984640A0A0U1RRK4 108 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 DLEU1O43261 78 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 COX17Q14061 63 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 C9orf163Q8N9P6 203 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 UQCR10Q9UDW1 63 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 TP73-AS1Q9UF72 201 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 TMEM238C9JI98 176 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 NDUFC2-KCTD14E9PQ53 114 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 TSTD3H0UI37 97 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 LINC01620Q4KN68 170 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 GAGE2EQ4V326 116 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 SCXQ7RTU7 201 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 GAGE2DQ9UEU5 116 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 TIMM17BO60830 172 aa7.75□□□□□ -1.17
UPF3A-210ENST00000493727 GAGE2BQ13066 116 aa7.75□□□□□ -1.17
UPF3A-210ENST00000493727 SERTAD4-AS1Q5TG53 156 aa7.75□□□□□ -1.17
UPF3A-210ENST00000493727 MIR7-3HGQ8N6C7 128 aa7.75□□□□□ -1.17
UPF3A-210ENST00000493727 IGKV2-24A0A0C4DH68 120 aa7.74□□□□□ -1.17
UPF3A-210ENST00000493727 TLX1NBP0CAT3 122 aa7.74□□□□□ -1.17
UPF3A-210ENST00000493727 DAND5Q8N907 189 aa7.74□□□□□ -1.17
UPF3A-210ENST00000493727 MIEN1Q9BRT3 115 aa7.74□□□□□ -1.17
UPF3A-210ENST00000493727 HNRNPA3P51991 378 aaKnown RBP7.73□□□□□ -1.17
UPF3A-210ENST00000493727 SRSF9Q13242 221 aaKnown RBP eCLIP7.73□□□□□ -1.17
UPF3A-210ENST00000493727 Q6ZRP5 223 aa7.73□□□□□ -1.17
UPF3A-210ENST00000493727 KRTAP10-4P60372 401 aaPredicted RBP7.72□□□□□ -1.17
UPF3A-210ENST00000493727 NPC2P61916 151 aa7.72□□□□□ -1.17
UPF3A-210ENST00000493727 CIRBP-AS1Q8TBR5 109 aa7.72□□□□□ -1.17
UPF3A-210ENST00000493727 COPS9Q8WXC6 57 aa7.72□□□□□ -1.17
UPF3A-210ENST00000493727 LINC00474Q9P2X8 69 aa7.72□□□□□ -1.17
UPF3A-210ENST00000493727 TNXBP22105 4242 aa7.71□□□□□ -1.17
UPF3A-210ENST00000493727 A0A096LNI7 61 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 ADAMTSL4-AS1Q5T5F5 129 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 HIST1H4GQ99525 98 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 LITAFQ99732 161 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 SPANXDQ9BXN6 97 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 SND1-IT1Q9HBX3 110 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 XAGE1AQ9HD64 81 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 SPANXCQ9NY87 97 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 SDIM1Q6ZPB5 146 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 C2orf91Q6ZV80 131 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 Q6ZVH6 145 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 DPH3Q96FX2 82 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 SPANXB1Q9NS25 103 aaPredicted RBP7.7□□□□□ -1.18
UPF3A-210ENST00000493727 HIGD1BQ9P298 99 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 LRP2P98164 4655 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 OXTP01178 125 aa7.69□□□□□ -1.18
UPF3A-210ENST00000493727 CHTF8P0CG12 524 aa7.69□□□□□ -1.18
UPF3A-210ENST00000493727 RNF213Q63HN8 5207 aa7.68□□□□□ -1.18
UPF3A-210ENST00000493727 IFITM1P13164 125 aa7.68□□□□□ -1.18
UPF3A-210ENST00000493727 SVIPQ8NHG7 77 aa7.68□□□□□ -1.18
UPF3A-210ENST00000493727 LINC00308Q8TCZ7 52 aa7.68□□□□□ -1.18
UPF3A-210ENST00000493727 HSD52Q0P140 79 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms