RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 SMIM13P0DJ93 91 aa14.76□□□□□ -0.05
UPF3A-209ENST00000492270 RPL28P46779 137 aaKnown RBP14.76□□□□□ -0.05
UPF3A-209ENST00000492270 TSPEAR-AS2P59090 65 aa14.76□□□□□ -0.05
UPF3A-209ENST00000492270 RPL24P83731 157 aaKnown RBP14.75□□□□□ -0.05
UPF3A-209ENST00000492270 MEIG1Q5JSS6 88 aa14.74□□□□□ -0.05
UPF3A-209ENST00000492270 NDUFA12Q9UI09 145 aa14.74□□□□□ -0.05
UPF3A-209ENST00000492270 HIST1H2BKO60814 126 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 HIST1H2BJP06899 126 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 HIST1H2BOP23527 126 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 PLNP26678 52 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 HIST1H2BBP33778 126 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 HIST1H2BDP58876 126 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 HIST1H2BCP62807 126 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 HIST2H2BEQ16778 126 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.73□□□□□ -0.05
UPF3A-209ENST00000492270 KRTAP13-1Q8IUC0 172 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 HIST1H2BHQ93079 126 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 HIST1H2BNQ99877 126 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 HIST1H2BMQ99879 126 aa14.73□□□□□ -0.05
UPF3A-209ENST00000492270 TMEM238C9JI98 176 aa14.72□□□□□ -0.05
UPF3A-209ENST00000492270 UBR4Q5T4S7 5183 aa14.71□□□□□ -0.05
UPF3A-209ENST00000492270 DPM2O94777 84 aa14.71□□□□□ -0.05
UPF3A-209ENST00000492270 UBE2AP49459 152 aa14.71□□□□□ -0.05
UPF3A-209ENST00000492270 HERV-K104P63124 156 aa14.71□□□□□ -0.05
UPF3A-209ENST00000492270 LEPROTO15243 131 aa14.7□□□□□ -0.06
UPF3A-209ENST00000492270 MIR7-3HGQ8N6C7 128 aa14.7□□□□□ -0.06
UPF3A-209ENST00000492270 TMEM126AQ9H061 195 aa14.7□□□□□ -0.06
UPF3A-209ENST00000492270 MYMXA0A1B0GTQ4 84 aa14.68□□□□□ -0.06
UPF3A-209ENST00000492270 ATP6V1G1O75348 118 aa14.68□□□□□ -0.06
UPF3A-209ENST00000492270 IGKCP01834 107 aa14.68□□□□□ -0.06
UPF3A-209ENST00000492270 PRLHP81277 87 aa14.68□□□□□ -0.06
UPF3A-209ENST00000492270 PLEKHB2Q96CS7 222 aa14.67□□□□□ -0.06
UPF3A-209ENST00000492270 MAP1LC3CQ9BXW4 147 aa14.67□□□□□ -0.06
UPF3A-209ENST00000492270 M0R378 163 aa14.66□□□□□ -0.06
UPF3A-209ENST00000492270 RPL13AP40429 203 aaKnown RBP14.66□□□□□ -0.06
UPF3A-209ENST00000492270 A0A087X002 238 aa14.65□□□□□ -0.06
UPF3A-209ENST00000492270 J3QQQ9 107 aa14.65□□□□□ -0.06
UPF3A-209ENST00000492270 FAM19A1Q7Z5A9 133 aa14.65□□□□□ -0.06
UPF3A-209ENST00000492270 BOD1L2Q8IYS8 172 aa14.65□□□□□ -0.06
UPF3A-209ENST00000492270 HERVK_113P61574 105 aa14.64□□□□□ -0.07
UPF3A-209ENST00000492270 LRP2P98164 4655 aa14.64□□□□□ -0.07
UPF3A-209ENST00000492270 ANAPC11Q9NYG5 84 aa14.64□□□□□ -0.07
UPF3A-209ENST00000492270 DAND5Q8N907 189 aa14.63□□□□□ -0.07
UPF3A-209ENST00000492270 NCR3O14931 201 aa14.62□□□□□ -0.07
UPF3A-209ENST00000492270 LINC00587B1AMM8 73 aa14.61□□□□□ -0.07
UPF3A-209ENST00000492270 SYS1-DBNDD2H3BUS1 97 aa14.6□□□□□ -0.07
UPF3A-209ENST00000492270 LGALS3P17931 250 aaKnown RBP14.6□□□□□ -0.07
UPF3A-209ENST00000492270 NMUP48645 174 aa14.57□□□□□ -0.08
UPF3A-209ENST00000492270 CRYGAP11844 174 aa14.56□□□□□ -0.08
UPF3A-209ENST00000492270 E9PLD3 99 aa14.54□□□□□ -0.08
UPF3A-209ENST00000492270 KRTAP13-2Q52LG2 175 aa14.54□□□□□ -0.08
UPF3A-209ENST00000492270 LINC01545Q5VT33 79 aa14.54□□□□□ -0.08
UPF3A-209ENST00000492270 IGKV2D-26A0A0A0MRZ7 120 aa14.53□□□□□ -0.08
UPF3A-209ENST00000492270 PRYO14603 147 aa14.53□□□□□ -0.08
UPF3A-209ENST00000492270 TYMSOSQ8TAI1 123 aa14.53□□□□□ -0.08
UPF3A-209ENST00000492270 LOC107984156A0A0G2JMH3 177 aa14.52□□□□□ -0.09
UPF3A-209ENST00000492270 TRBV10-3A0A0K0K1G6 114 aa14.52□□□□□ -0.09
UPF3A-209ENST00000492270 ARL17AQ8IVW1 177 aa14.52□□□□□ -0.09
UPF3A-209ENST00000492270 HIGD2AQ9BW72 106 aa14.52□□□□□ -0.09
UPF3A-209ENST00000492270 COA6Q5JTJ3 125 aaKnown RBP14.51□□□□□ -0.09
UPF3A-209ENST00000492270 A0A0J9YXY3 114 aa14.5□□□□□ -0.09
UPF3A-209ENST00000492270 C3orf79P0CE67 100 aa14.5□□□□□ -0.09
UPF3A-209ENST00000492270 PET117Q6UWS5 81 aa14.5□□□□□ -0.09
UPF3A-209ENST00000492270 FAM229BQ4G0N7 80 aa14.49□□□□□ -0.09
UPF3A-209ENST00000492270 KCNQ1DNQ9H478 68 aa14.49□□□□□ -0.09
UPF3A-209ENST00000492270 SPRR1AP35321 89 aa14.48□□□□□ -0.09
UPF3A-209ENST00000492270 NPC2P61916 151 aa14.48□□□□□ -0.09
UPF3A-209ENST00000492270 ADAMTSL4-AS1Q5T5F5 129 aa14.48□□□□□ -0.09
UPF3A-209ENST00000492270 LPAP08519 4548 aa14.48□□□□□ -0.09
UPF3A-209ENST00000492270 EIF4EBP3O60516 100 aaPredicted RBP14.47□□□□□ -0.09
UPF3A-209ENST00000492270 TSPAN13O95857 204 aa14.47□□□□□ -0.09
UPF3A-209ENST00000492270 SOSTDC1Q6X4U4 206 aa14.47□□□□□ -0.09
UPF3A-209ENST00000492270 MIEN1Q9BRT3 115 aa14.46□□□□□ -0.09
UPF3A-209ENST00000492270 KRTAP4-16G5E9R7 235 aaPredicted RBP14.45□□□□□ -0.1
UPF3A-209ENST00000492270 LINC00337Q8N6G1 96 aa14.45□□□□□ -0.1
UPF3A-209ENST00000492270 KRTDAPP60985 99 aa14.44□□□□□ -0.1
UPF3A-209ENST00000492270 TRBV10-2A0A0K0K1G8 114 aa14.43□□□□□ -0.1
UPF3A-209ENST00000492270 DDTP30046 118 aa14.43□□□□□ -0.1
UPF3A-209ENST00000492270 SPANXB1Q9NS25 103 aaPredicted RBP14.43□□□□□ -0.1
UPF3A-209ENST00000492270 ETDCA0A1B0GVM5 59 aa14.42□□□□□ -0.1
UPF3A-209ENST00000492270 TTTY13Q9BZ97 58 aa14.42□□□□□ -0.1
UPF3A-209ENST00000492270 NDUFC2O95298 119 aa14.41□□□□□ -0.1
UPF3A-209ENST00000492270 SPRR4Q96PI1 79 aa14.41□□□□□ -0.1
UPF3A-209ENST00000492270 PRR4Q16378 134 aa14.4□□□□□ -0.1
UPF3A-209ENST00000492270 C3orf22Q8N5N4 141 aa14.4□□□□□ -0.1
UPF3A-209ENST00000492270 LITAFQ99732 161 aa14.4□□□□□ -0.1
UPF3A-209ENST00000492270 SMCR5Q8TEV8 140 aa14.38□□□□□ -0.11
UPF3A-209ENST00000492270 ZNF815PA8K554 130 aa14.37□□□□□ -0.11
UPF3A-209ENST00000492270 S100A12P80511 92 aa14.37□□□□□ -0.11
UPF3A-209ENST00000492270 LINC00304Q8N9R0 145 aa14.37□□□□□ -0.11
UPF3A-209ENST00000492270 B5MCH6 92 aa14.36□□□□□ -0.11
UPF3A-209ENST00000492270 IGLV6-57P01721 117 aa14.36□□□□□ -0.11
UPF3A-209ENST00000492270 S100A7L2Q5SY68 101 aa14.36□□□□□ -0.11
UPF3A-209ENST00000492270 TIMM17BO60830 172 aa14.34□□□□□ -0.11
UPF3A-209ENST00000492270 LINC00308Q8TCZ7 52 aa14.34□□□□□ -0.11
UPF3A-209ENST00000492270 ZNF706Q9Y5V0 76 aaPredicted RBP14.34□□□□□ -0.11
UPF3A-209ENST00000492270 RNF213Q63HN8 5207 aa14.33□□□□□ -0.12
UPF3A-209ENST00000492270 ATOH7Q8N100 152 aa14.33□□□□□ -0.12
UPF3A-209ENST00000492270 C20orf202A1L168 122 aa14.32□□□□□ -0.12
UPF3A-209ENST00000492270 ANKRD39Q53RE8 183 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms