RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 IGLV5-37A0A075B6J1 123 aa10.02□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 J3QQQ9 107 aa10.02□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 OXTP01178 125 aa10.02□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 A0A0U1RRA0 63 aa10.01□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 LINC00587B1AMM8 73 aa10.01□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 J3QL48 77 aa10.01□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 SMIM13P0DJ93 91 aa10.01□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 LGALS3P17931 250 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 SPINK6Q6UWN8 80 aa10.01□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 NKAPP1Q8N9T2 125 aa10.01□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 E9PLD3 99 aa10□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 NMUP48645 174 aa10□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 SRSF9Q13242 221 aaKnown RBP eCLIP10□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 IGLV7-43P04211 117 aa9.99□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 C20orf202A1L168 122 aa9.98□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 VPREB1P12018 145 aa9.98□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 RPL24P83731 157 aaKnown RBP9.98□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 LINC00167Q96N53 147 aa9.98□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 GAGE10A6NGK3 116 aa9.97□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 HIST3H2BBQ8N257 126 aa9.97□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 MIR7-3HGQ8N6C7 128 aa9.97□□□□□ -0.81
MSH5-SAPCD1-206ENST00000491552 S100A6P06703 90 aa9.96□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 S100A2P29034 98 aa9.96□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 RPL37AP8A6NKH3 93 aa9.95□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 Q8NDZ9 215 aa9.95□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 FAT3Q8TDW7 4589 aa9.94□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 REG3GQ6UW15 175 aa9.94□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 HIST1H2BLQ99880 126 aa9.94□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 LRP1Q07954 4544 aaKnown RBP9.93□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 AKR1D1P51857 326 aa9.92□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 DIRC1Q969H9 104 aa9.92□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 IGKV2-28A0A075B6P5 120 aa9.91□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 A0A0J9YXY3 114 aa9.91□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 BCE1O60756 84 aa9.91□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 IGKV2D-28P01615 120 aa9.91□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 BOD1L2Q8IYS8 172 aa9.91□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 DAND5Q8N907 189 aa9.91□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 IGLV1-50A0A075B6I6 118 aa9.9□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 IGKV2D-26A0A0A0MRZ7 120 aa9.9□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 ATOH7Q8N100 152 aa9.9□□□□□ -0.82
MSH5-SAPCD1-206ENST00000491552 H0Y9J4 135 aa9.89□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 M0R378 163 aa9.89□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 SNRPEP62304 92 aaKnown RBP9.89□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 LINC01600Q96MT4 127 aa9.89□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 DMBT1Q9UGM3 2413 aaPredicted RBP9.88□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 LOC107984156A0A0G2JMH3 177 aa9.88□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 ZNF815PA8K554 130 aa9.88□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 ZNF861PO60384 105 aa9.88□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 MT1HL1P0DM35 61 aa9.88□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 ARL17AQ8IVW1 177 aa9.88□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 NCR3O14931 201 aa9.87□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 MIEN1Q9BRT3 115 aa9.87□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 TTTY13Q9BZ97 58 aa9.87□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 RPL28P46779 137 aaKnown RBP9.86□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 ANKRD39Q53RE8 183 aa9.86□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 C5orf52A6NGY3 159 aa9.85□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 TMEM238C9JI98 176 aa9.85□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 TIMM17BO60830 172 aa9.85□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 ADAMTSL4-AS1Q5T5F5 129 aa9.85□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 UBE2AP49459 152 aa9.84□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 TMEM126AQ9H061 195 aa9.84□□□□□ -0.83
MSH5-SAPCD1-206ENST00000491552 NPC2P61916 151 aa9.83□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 LITAFQ99732 161 aa9.83□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 NDUFC2O95298 119 aa9.82□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 SOSTDC1Q6X4U4 206 aa9.82□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 KRTAP13-1Q8IUC0 172 aa9.82□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 TRBV10-2A0A0K0K1G8 114 aa9.81□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 PRYO14603 147 aa9.81□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 FAM19A1Q7Z5A9 133 aa9.81□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 SPANXB1Q9NS25 103 aaPredicted RBP9.81□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 SCGB1D4Q6XE38 83 aa9.8□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 TRBV10-3A0A0K0K1G6 114 aa9.79□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 HSBP1L1C9JCN9 74 aa9.79□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 EIF4EBP3O60516 100 aaPredicted RBP9.79□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 KRTAP1-4P0C5Y4 121 aa9.79□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 KRTAP10-8P60410 259 aa9.79□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 PRLHP81277 87 aa9.79□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 LINC00308Q8TCZ7 52 aa9.79□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 HERC1Q15751 4861 aa9.78□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 PCP2Q8IVA1 136 aa9.78□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 KCNQ1DNQ9H478 68 aa9.78□□□□□ -0.84
MSH5-SAPCD1-206ENST00000491552 SCGB1D1O95968 90 aa9.77□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 DDTP30046 118 aa9.77□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 S100A12P80511 92 aa9.77□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 SPANXDQ9BXN6 97 aa9.77□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 SPANXCQ9NY87 97 aa9.77□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 PRR26Q8N8Z3 221 aa9.76□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 SPRR1AP35321 89 aa9.75□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 S100A7L2Q5SY68 101 aa9.75□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 LINC00337Q8N6G1 96 aa9.74□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 TNXBP22105 4242 aa9.74□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 ETDCA0A1B0GVM5 59 aa9.73□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 IGLV6-57P01721 117 aa9.73□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 KRTAP4-16G5E9R7 235 aaPredicted RBP9.72□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 COPS9Q8WXC6 57 aa9.72□□□□□ -0.85
MSH5-SAPCD1-206ENST00000491552 IFITM1P13164 125 aa9.71□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 RPL13AP40429 203 aaKnown RBP9.71□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 Q6ZVH6 145 aa9.71□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 HIGD2AQ9BW72 106 aa9.71□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 TRAV23DV6A0A075B6W5 121 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms