RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 K7EMI3 77 aa8.02□□□□□ -1.13
SQSTM1-208ENST00000485412 SPINK8P0C7L1 97 aa8.02□□□□□ -1.13
SQSTM1-208ENST00000485412 JOSD1Q15040 202 aaPredicted RBP8.02□□□□□ -1.13
SQSTM1-208ENST00000485412 TPRXLQ17RH7 258 aa8.02□□□□□ -1.13
SQSTM1-208ENST00000485412 LINC00304Q8N9R0 145 aa8.02□□□□□ -1.13
SQSTM1-208ENST00000485412 IGLV5-37A0A075B6J1 123 aa8.01□□□□□ -1.13
SQSTM1-208ENST00000485412 IGKV2-28A0A075B6P5 120 aa8.01□□□□□ -1.13
SQSTM1-208ENST00000485412 IGLV5-45A0A087WSX0 123 aa8.01□□□□□ -1.13
SQSTM1-208ENST00000485412 IGKV2D-28P01615 120 aa8.01□□□□□ -1.13
SQSTM1-208ENST00000485412 CXCL5P42830 114 aa8.01□□□□□ -1.13
SQSTM1-208ENST00000485412 SEC11AP67812 179 aa8.01□□□□□ -1.13
SQSTM1-208ENST00000485412 BAGE3Q86Y29 109 aa8.01□□□□□ -1.13
SQSTM1-208ENST00000485412 IGLV7-46A0A075B6I9 117 aa8□□□□□ -1.13
SQSTM1-208ENST00000485412 TINCRA0A1B0GVN0 87 aa8□□□□□ -1.13
SQSTM1-208ENST00000485412 PRLHP81277 87 aa8□□□□□ -1.13
SQSTM1-208ENST00000485412 ERASQ7Z444 233 aa8□□□□□ -1.13
SQSTM1-208ENST00000485412 SCGB3A1Q96QR1 104 aa8□□□□□ -1.13
SQSTM1-208ENST00000485412 SERF1AO75920 110 aa7.99□□□□□ -1.13
SQSTM1-208ENST00000485412 UBE2AP49459 152 aa7.99□□□□□ -1.13
SQSTM1-208ENST00000485412 LINC00310P59036 64 aa7.99□□□□□ -1.13
SQSTM1-208ENST00000485412 PAPPA-AS1Q5QFB9 102 aa7.99□□□□□ -1.13
SQSTM1-208ENST00000485412 TMEM238C9JI98 176 aa7.98□□□□□ -1.13
SQSTM1-208ENST00000485412 Q8NDZ9 215 aa7.98□□□□□ -1.13
SQSTM1-208ENST00000485412 CHCHD1Q96BP2 118 aaKnown RBP7.98□□□□□ -1.13
SQSTM1-208ENST00000485412 CST9LQ9H4G1 147 aa7.98□□□□□ -1.13
SQSTM1-208ENST00000485412 LINC00614P0C842 121 aa7.97□□□□□ -1.13
SQSTM1-208ENST00000485412 NKAPP1Q8N9T2 125 aa7.97□□□□□ -1.13
SQSTM1-208ENST00000485412 URB1-AS1Q96HZ7 61 aa7.97□□□□□ -1.13
SQSTM1-208ENST00000485412 IGKV2D-26A0A0A0MRZ7 120 aa7.96□□□□□ -1.14
SQSTM1-208ENST00000485412 FAM229BQ4G0N7 80 aa7.96□□□□□ -1.14
SQSTM1-208ENST00000485412 C3orf22Q8N5N4 141 aa7.96□□□□□ -1.14
SQSTM1-208ENST00000485412 LINC01546A6NGU7 62 aa7.95□□□□□ -1.14
SQSTM1-208ENST00000485412 VPREB1P12018 145 aa7.95□□□□□ -1.14
SQSTM1-208ENST00000485412 PFN2P35080 140 aa7.95□□□□□ -1.14
SQSTM1-208ENST00000485412 PRO1933Q9H354 126 aa7.95□□□□□ -1.14
SQSTM1-208ENST00000485412 HSBP1O75506 76 aa7.94□□□□□ -1.14
SQSTM1-208ENST00000485412 DDTP30046 118 aa7.94□□□□□ -1.14
SQSTM1-208ENST00000485412 PPDPFQ9H3Y8 114 aa7.94□□□□□ -1.14
SQSTM1-208ENST00000485412 TSTD3H0UI37 97 aa7.93□□□□□ -1.14
SQSTM1-208ENST00000485412 M0R378 163 aa7.93□□□□□ -1.14
SQSTM1-208ENST00000485412 G0S2P27469 103 aa7.93□□□□□ -1.14
SQSTM1-208ENST00000485412 FAM19A1Q7Z5A9 133 aa7.93□□□□□ -1.14
SQSTM1-208ENST00000485412 C14orf144Q96I85 54 aa7.93□□□□□ -1.14
SQSTM1-208ENST00000485412 TMEM126AQ9H061 195 aa7.93□□□□□ -1.14
SQSTM1-208ENST00000485412 SND1-IT1Q9HBX3 110 aa7.93□□□□□ -1.14
SQSTM1-208ENST00000485412 IGLV5-39A0A0G2JS06 123 aa7.92□□□□□ -1.14
SQSTM1-208ENST00000485412 LINC01547P58512 204 aaPredicted RBP7.92□□□□□ -1.14
SQSTM1-208ENST00000485412 PMVKQ15126 192 aa7.92□□□□□ -1.14
SQSTM1-208ENST00000485412 FA2HQ7L5A8 372 aa7.92□□□□□ -1.14
SQSTM1-208ENST00000485412 ATP5LO75964 103 aa7.91□□□□□ -1.14
SQSTM1-208ENST00000485412 LCE2DQ5TA82 110 aaPredicted RBP7.91□□□□□ -1.14
SQSTM1-208ENST00000485412 PLEKHB2Q96CS7 222 aa7.91□□□□□ -1.14
SQSTM1-208ENST00000485412 ZNF625Q96I27 306 aaPredicted RBP7.91□□□□□ -1.14
SQSTM1-208ENST00000485412 A0A096LNJ9 63 aa7.9□□□□□ -1.14
SQSTM1-208ENST00000485412 ZNF22P17026 224 aaPredicted RBP7.9□□□□□ -1.14
SQSTM1-208ENST00000485412 FAM19A2Q8N3H0 131 aa7.9□□□□□ -1.14
SQSTM1-208ENST00000485412 ERG28Q9UKR5 140 aa7.9□□□□□ -1.14
SQSTM1-208ENST00000485412 IGLC3P0DOY3 106 aa7.89□□□□□ -1.15
SQSTM1-208ENST00000485412 LINC00337Q8N6G1 96 aa7.89□□□□□ -1.15
SQSTM1-208ENST00000485412 CRCT1Q9UGL9 99 aa7.89□□□□□ -1.15
SQSTM1-208ENST00000485412 H3BRM9 83 aa7.88□□□□□ -1.15
SQSTM1-208ENST00000485412 SCGB1D1O95968 90 aa7.88□□□□□ -1.15
SQSTM1-208ENST00000485412 HIGD2AQ9BW72 106 aa7.87□□□□□ -1.15
SQSTM1-208ENST00000485412 LEPROTL1O95214 131 aa7.86□□□□□ -1.15
SQSTM1-208ENST00000485412 HBDP02042 147 aa7.86□□□□□ -1.15
SQSTM1-208ENST00000485412 PMCHL1Q16048 86 aa7.86□□□□□ -1.15
SQSTM1-208ENST00000485412 HSPB8Q9UJY1 196 aa7.86□□□□□ -1.15
SQSTM1-208ENST00000485412 FSIP2Q5CZC0 6907 aa7.86□□□□□ -1.15
SQSTM1-208ENST00000485412 C11orf86A6NJI1 115 aa7.85□□□□□ -1.15
SQSTM1-208ENST00000485412 SPRR4Q96PI1 79 aa7.85□□□□□ -1.15
SQSTM1-208ENST00000485412 KRTAP4-1Q9BYQ7 146 aa7.85□□□□□ -1.15
SQSTM1-208ENST00000485412 LINC01549A6NIU2 74 aa7.84□□□□□ -1.15
SQSTM1-208ENST00000485412 C3orf79P0CE67 100 aa7.84□□□□□ -1.15
SQSTM1-208ENST00000485412 ASB16-AS1Q495Z4 193 aa7.84□□□□□ -1.15
SQSTM1-208ENST00000485412 SPAG11AQ6PDA7 123 aa7.84□□□□□ -1.15
SQSTM1-208ENST00000485412 FP248Q71RG6 208 aaPredicted RBP7.84□□□□□ -1.15
SQSTM1-208ENST00000485412 DAND5Q8N907 189 aa7.84□□□□□ -1.15
SQSTM1-208ENST00000485412 A0A0U1RRA0 63 aa7.83□□□□□ -1.16
SQSTM1-208ENST00000485412 RPL24P83731 157 aaKnown RBP7.83□□□□□ -1.16
SQSTM1-208ENST00000485412 SYS1-DBNDD2H3BUS1 97 aa7.82□□□□□ -1.16
SQSTM1-208ENST00000485412 KRTDAPP60985 99 aa7.82□□□□□ -1.16
SQSTM1-208ENST00000485412 COX17Q14061 63 aa7.82□□□□□ -1.16
SQSTM1-208ENST00000485412 KRTAP13-3Q3SY46 172 aa7.82□□□□□ -1.16
SQSTM1-208ENST00000485412 C4orf48Q5BLP8 95 aa7.82□□□□□ -1.16
SQSTM1-208ENST00000485412 PET117Q6UWS5 81 aa7.82□□□□□ -1.16
SQSTM1-208ENST00000485412 MAP1LC3CQ9BXW4 147 aa7.82□□□□□ -1.16
SQSTM1-208ENST00000485412 A0A1B0GV90 55 aa7.81□□□□□ -1.16
SQSTM1-208ENST00000485412 SEC61BP60468 96 aaKnown RBP7.8□□□□□ -1.16
SQSTM1-208ENST00000485412 TMEM170BQ5T4T1 132 aa7.8□□□□□ -1.16
SQSTM1-208ENST00000485412 Q8NBF4 154 aa7.8□□□□□ -1.16
SQSTM1-208ENST00000485412 IFI27L1Q96BM0 104 aa7.8□□□□□ -1.16
SQSTM1-208ENST00000485412 VAMP8Q9BV40 100 aa7.8□□□□□ -1.16
SQSTM1-208ENST00000485412 SNHG12Q9BXW3 62 aa7.8□□□□□ -1.16
SQSTM1-208ENST00000485412 LINC00158P58513 81 aa7.79□□□□□ -1.16
SQSTM1-208ENST00000485412 MIEN1Q9BRT3 115 aa7.79□□□□□ -1.16
SQSTM1-208ENST00000485412 PAM16Q9Y3D7 125 aa7.79□□□□□ -1.16
SQSTM1-208ENST00000485412 NCR3O14931 201 aa7.78□□□□□ -1.16
SQSTM1-208ENST00000485412 LINC01545Q5VT33 79 aa7.78□□□□□ -1.16
SQSTM1-208ENST00000485412 C20orf202A1L168 122 aa7.77□□□□□ -1.17
SQSTM1-208ENST00000485412 KRTAP4-16G5E9R7 235 aaPredicted RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms