RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PLEKHB2Q96CS7 222 aa9.8□□□□□ -0.84
UPF3A-208ENST00000484246 PMCHL2Q9BQD1 86 aa9.8□□□□□ -0.84
UPF3A-208ENST00000484246 LEPROTO15243 131 aa9.79□□□□□ -0.84
UPF3A-208ENST00000484246 EIF4EBP3O60516 100 aaPredicted RBP9.79□□□□□ -0.84
UPF3A-208ENST00000484246 PFN2P35080 140 aa9.79□□□□□ -0.84
UPF3A-208ENST00000484246 SRSF9Q13242 221 aaKnown RBP eCLIP9.79□□□□□ -0.84
UPF3A-208ENST00000484246 SND1-IT1Q9HBX3 110 aa9.79□□□□□ -0.84
UPF3A-208ENST00000484246 C22orf24Q9Y442 160 aa9.79□□□□□ -0.84
UPF3A-208ENST00000484246 TSPEAR-AS2P59090 65 aa9.78□□□□□ -0.84
UPF3A-208ENST00000484246 LBHQ53QV2 105 aaPredicted RBP9.78□□□□□ -0.84
UPF3A-208ENST00000484246 SPINK6Q6UWN8 80 aa9.78□□□□□ -0.84
UPF3A-208ENST00000484246 KRTAP11-1Q8IUC1 163 aa9.78□□□□□ -0.84
UPF3A-208ENST00000484246 NDUFA12Q9UI09 145 aa9.78□□□□□ -0.84
UPF3A-208ENST00000484246 LINC00587B1AMM8 73 aa9.77□□□□□ -0.85
UPF3A-208ENST00000484246 C3orf79P0CE67 100 aa9.77□□□□□ -0.85
UPF3A-208ENST00000484246 MRPL55Q7Z7F7 128 aaKnown RBP9.77□□□□□ -0.85
UPF3A-208ENST00000484246 MYMXA0A1B0GTQ4 84 aa9.76□□□□□ -0.85
UPF3A-208ENST00000484246 E9PLD3 99 aa9.76□□□□□ -0.85
UPF3A-208ENST00000484246 J3QQQ9 107 aa9.76□□□□□ -0.85
UPF3A-208ENST00000484246 NMUP48645 174 aa9.76□□□□□ -0.85
UPF3A-208ENST00000484246 UBE2BP63146 152 aa9.75□□□□□ -0.85
UPF3A-208ENST00000484246 C1orf137Q5JT78 98 aa9.75□□□□□ -0.85
UPF3A-208ENST00000484246 FAT3Q8TDW7 4589 aa9.74□□□□□ -0.85
UPF3A-208ENST00000484246 IGLV7-43P04211 117 aa9.74□□□□□ -0.85
UPF3A-208ENST00000484246 VPREB1P12018 145 aa9.74□□□□□ -0.85
UPF3A-208ENST00000484246 LINC00158P58513 81 aa9.73□□□□□ -0.85
UPF3A-208ENST00000484246 LRP1Q07954 4544 aaKnown RBP9.73□□□□□ -0.85
UPF3A-208ENST00000484246 SMIM13P0DJ93 91 aa9.72□□□□□ -0.85
UPF3A-208ENST00000484246 LGALS3P17931 250 aaKnown RBP9.72□□□□□ -0.85
UPF3A-208ENST00000484246 RPL24P83731 157 aaKnown RBP9.72□□□□□ -0.85
UPF3A-208ENST00000484246 MEIG1Q5JSS6 88 aa9.72□□□□□ -0.85
UPF3A-208ENST00000484246 NKAPP1Q8N9T2 125 aa9.72□□□□□ -0.85
UPF3A-208ENST00000484246 C20orf202A1L168 122 aa9.71□□□□□ -0.86
UPF3A-208ENST00000484246 KRTDAPP60985 99 aa9.71□□□□□ -0.86
UPF3A-208ENST00000484246 HIST3H2BBQ8N257 126 aa9.71□□□□□ -0.86
UPF3A-208ENST00000484246 LINC00167Q96N53 147 aa9.71□□□□□ -0.86
UPF3A-208ENST00000484246 AKR1D1P51857 326 aa9.7□□□□□ -0.86
UPF3A-208ENST00000484246 MIR7-3HGQ8N6C7 128 aa9.7□□□□□ -0.86
UPF3A-208ENST00000484246 REG3GQ6UW15 175 aa9.69□□□□□ -0.86
UPF3A-208ENST00000484246 Q8NDZ9 215 aa9.69□□□□□ -0.86
UPF3A-208ENST00000484246 LOC107984156A0A0G2JMH3 177 aa9.68□□□□□ -0.86
UPF3A-208ENST00000484246 ARL17AQ8IVW1 177 aa9.68□□□□□ -0.86
UPF3A-208ENST00000484246 HIST1H2BLQ99880 126 aa9.68□□□□□ -0.86
UPF3A-208ENST00000484246 A0A0U1RRA0 63 aa9.67□□□□□ -0.86
UPF3A-208ENST00000484246 BCE1O60756 84 aa9.67□□□□□ -0.86
UPF3A-208ENST00000484246 MT1HL1P0DM35 61 aa9.67□□□□□ -0.86
UPF3A-208ENST00000484246 DIRC1Q969H9 104 aa9.67□□□□□ -0.86
UPF3A-208ENST00000484246 LINC01600Q96MT4 127 aa9.67□□□□□ -0.86
UPF3A-208ENST00000484246 IGLV1-50A0A075B6I6 118 aa9.65□□□□□ -0.86
UPF3A-208ENST00000484246 IGKV2D-26A0A0A0MRZ7 120 aa9.65□□□□□ -0.86
UPF3A-208ENST00000484246 A0A0J9YXY3 114 aa9.65□□□□□ -0.86
UPF3A-208ENST00000484246 GAGE10A6NGK3 116 aa9.65□□□□□ -0.86
UPF3A-208ENST00000484246 H0Y9J4 135 aa9.65□□□□□ -0.86
UPF3A-208ENST00000484246 S100A6P06703 90 aa9.65□□□□□ -0.86
UPF3A-208ENST00000484246 S100A2P29034 98 aa9.65□□□□□ -0.86
UPF3A-208ENST00000484246 RPL37AP8A6NKH3 93 aa9.64□□□□□ -0.87
UPF3A-208ENST00000484246 ZNF861PO60384 105 aa9.64□□□□□ -0.87
UPF3A-208ENST00000484246 BOD1L2Q8IYS8 172 aa9.64□□□□□ -0.87
UPF3A-208ENST00000484246 M0R378 163 aa9.63□□□□□ -0.87
UPF3A-208ENST00000484246 TIMM17BO60830 172 aa9.63□□□□□ -0.87
UPF3A-208ENST00000484246 KRTAP13-1Q8IUC0 172 aa9.62□□□□□ -0.87
UPF3A-208ENST00000484246 IGKV2-28A0A075B6P5 120 aa9.61□□□□□ -0.87
UPF3A-208ENST00000484246 C5orf52A6NGY3 159 aa9.61□□□□□ -0.87
UPF3A-208ENST00000484246 IGKV2D-28P01615 120 aa9.61□□□□□ -0.87
UPF3A-208ENST00000484246 RPL28P46779 137 aaKnown RBP9.61□□□□□ -0.87
UPF3A-208ENST00000484246 SNRPEP62304 92 aaKnown RBP9.61□□□□□ -0.87
UPF3A-208ENST00000484246 LITAFQ99732 161 aa9.61□□□□□ -0.87
UPF3A-208ENST00000484246 TRBV10-2A0A0K0K1G8 114 aa9.6□□□□□ -0.87
UPF3A-208ENST00000484246 ZNF815PA8K554 130 aa9.6□□□□□ -0.87
UPF3A-208ENST00000484246 NDUFC2O95298 119 aa9.6□□□□□ -0.87
UPF3A-208ENST00000484246 ANKRD39Q53RE8 183 aa9.6□□□□□ -0.87
UPF3A-208ENST00000484246 DAND5Q8N907 189 aa9.6□□□□□ -0.87
UPF3A-208ENST00000484246 KRTAP10-8P60410 259 aa9.59□□□□□ -0.87
UPF3A-208ENST00000484246 MIEN1Q9BRT3 115 aa9.59□□□□□ -0.87
UPF3A-208ENST00000484246 TMEM126AQ9H061 195 aa9.59□□□□□ -0.87
UPF3A-208ENST00000484246 KRTAP1-4P0C5Y4 121 aa9.58□□□□□ -0.88
UPF3A-208ENST00000484246 ADAMTSL4-AS1Q5T5F5 129 aa9.58□□□□□ -0.88
UPF3A-208ENST00000484246 ATOH7Q8N100 152 aa9.58□□□□□ -0.88
UPF3A-208ENST00000484246 HMCN2Q8NDA2 5059 aa9.58□□□□□ -0.88
UPF3A-208ENST00000484246 TNXBP22105 4242 aa9.58□□□□□ -0.88
UPF3A-208ENST00000484246 PRYO14603 147 aa9.57□□□□□ -0.88
UPF3A-208ENST00000484246 SOSTDC1Q6X4U4 206 aa9.57□□□□□ -0.88
UPF3A-208ENST00000484246 TTTY13Q9BZ97 58 aa9.57□□□□□ -0.88
UPF3A-208ENST00000484246 SPANXB1Q9NS25 103 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-208ENST00000484246 TMEM238C9JI98 176 aa9.56□□□□□ -0.88
UPF3A-208ENST00000484246 NCR3O14931 201 aa9.56□□□□□ -0.88
UPF3A-208ENST00000484246 SPRR1AP35321 89 aa9.56□□□□□ -0.88
UPF3A-208ENST00000484246 KCNQ1DNQ9H478 68 aa9.56□□□□□ -0.88
UPF3A-208ENST00000484246 UBE2AP49459 152 aa9.55□□□□□ -0.88
UPF3A-208ENST00000484246 PPDPFQ9H3Y8 114 aa9.54□□□□□ -0.88
UPF3A-208ENST00000484246 TRBV10-3A0A0K0K1G6 114 aa9.53□□□□□ -0.88
UPF3A-208ENST00000484246 LINC00337Q8N6G1 96 aa9.53□□□□□ -0.88
UPF3A-208ENST00000484246 LINC00308Q8TCZ7 52 aa9.53□□□□□ -0.88
UPF3A-208ENST00000484246 SPANXDQ9BXN6 97 aa9.53□□□□□ -0.88
UPF3A-208ENST00000484246 SPANXCQ9NY87 97 aa9.53□□□□□ -0.88
UPF3A-208ENST00000484246 KRTAP4-16G5E9R7 235 aaPredicted RBP9.52□□□□□ -0.89
UPF3A-208ENST00000484246 FAM19A1Q7Z5A9 133 aa9.52□□□□□ -0.89
UPF3A-208ENST00000484246 IGLV6-57P01721 117 aa9.51□□□□□ -0.89
UPF3A-208ENST00000484246 SCGB1D4Q6XE38 83 aa9.51□□□□□ -0.89
UPF3A-208ENST00000484246 PCP2Q8IVA1 136 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms