RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 GNG2P59768 71 aa0.21□□□□□ -2.38
UPF3B-203ENST00000478840 PLGLAQ15195 96 aa0.21□□□□□ -2.38
UPF3B-203ENST00000478840 SLIT1O75093 1534 aa0.21□□□□□ -2.38
UPF3B-203ENST00000478840 NKTRP30414 1462 aaKnown RBP0.21□□□□□ -2.38
UPF3B-203ENST00000478840 S100A16Q96FQ6 103 aaKnown RBP0.2□□□□□ -2.38
UPF3B-203ENST00000478840 FXYD6Q9H0Q3 95 aa0.2□□□□□ -2.38
UPF3B-203ENST00000478840 KIAA1551Q9HCM1 1747 aa0.2□□□□□ -2.38
UPF3B-203ENST00000478840 MYH4Q9Y623 1939 aa0.2□□□□□ -2.38
UPF3B-203ENST00000478840 MYO3AQ8NEV4 1616 aa0.2□□□□□ -2.38
UPF3B-203ENST00000478840 SPTY2D1-AS1A0A0U1RR47 76 aa0.19□□□□□ -2.38
UPF3B-203ENST00000478840 SNRPFP62306 86 aaKnown RBP0.19□□□□□ -2.38
UPF3B-203ENST00000478840 CRYBG1Q9Y4K1 1723 aa0.18□□□□□ -2.38
UPF3B-203ENST00000478840 CCL22O00626 93 aa0.18□□□□□ -2.38
UPF3B-203ENST00000478840 CYB5AP00167 134 aa0.18□□□□□ -2.38
UPF3B-203ENST00000478840 ANKRD36A6QL64 1941 aa0.18□□□□□ -2.38
UPF3B-203ENST00000478840 SPTA1P02549 2419 aa0.18□□□□□ -2.38
UPF3B-203ENST00000478840 SMARCA2P51531 1590 aa0.18□□□□□ -2.38
UPF3B-203ENST00000478840 CACNA1AO00555 2505 aa0.17□□□□□ -2.38
UPF3B-203ENST00000478840 A0A1B0GUT8 65 aa0.17□□□□□ -2.38
UPF3B-203ENST00000478840 DEFB112Q30KQ8 113 aa0.17□□□□□ -2.38
UPF3B-203ENST00000478840 CSPG4Q6UVK1 2322 aa0.16□□□□□ -2.38
UPF3B-203ENST00000478840 FMN2Q9NZ56 1722 aa0.16□□□□□ -2.38
UPF3B-203ENST00000478840 CLIP1P30622 1438 aa0.16□□□□□ -2.38
UPF3B-203ENST00000478840 C9orf62Q8N4C0 152 aa0.16□□□□□ -2.38
UPF3B-203ENST00000478840 APLNQ9ULZ1 77 aa0.16□□□□□ -2.38
UPF3B-203ENST00000478840 COL7A1Q02388 2944 aa0.15□□□□□ -2.39
UPF3B-203ENST00000478840 RGPD4Q7Z3J3 1758 aa0.15□□□□□ -2.39
UPF3B-203ENST00000478840 NEXMIFQ5QGS0 1516 aa0.15□□□□□ -2.39
UPF3B-203ENST00000478840 ACYP1P07311 99 aa0.15□□□□□ -2.39
UPF3B-203ENST00000478840 LINC00643Q86TS7 51 aa0.15□□□□□ -2.39
UPF3B-203ENST00000478840 MRPL34Q9BQ48 92 aaKnown RBP0.15□□□□□ -2.39
UPF3B-203ENST00000478840 HUWE1Q7Z6Z7 4374 aaKnown RBP0.14□□□□□ -2.39
UPF3B-203ENST00000478840 MYMXA0A1B0GTQ4 84 aa0.14□□□□□ -2.39
UPF3B-203ENST00000478840 IQCF6A8MYZ5 107 aa0.14□□□□□ -2.39
UPF3B-203ENST00000478840 ATP7BP35670 1465 aa0.14□□□□□ -2.39
UPF3B-203ENST00000478840 PKD1L1Q8TDX9 2849 aa0.14□□□□□ -2.39
UPF3B-203ENST00000478840 KLK9Q2XQG4 91 aa0.13□□□□□ -2.39
UPF3B-203ENST00000478840 ATRQ13535 2644 aa0.13□□□□□ -2.39
UPF3B-203ENST00000478840 KIF20BQ96Q89 1820 aa0.13□□□□□ -2.39
UPF3B-203ENST00000478840 ALKQ9UM73 1620 aa0.13□□□□□ -2.39
UPF3B-203ENST00000478840 UACAQ9BZF9 1416 aa0.13□□□□□ -2.39
UPF3B-203ENST00000478840 LRRC9Q6ZRR7 1453 aa0.12□□□□□ -2.39
UPF3B-203ENST00000478840 LOC730098B7Z3J9 87 aa0.12□□□□□ -2.39
UPF3B-203ENST00000478840 SPRR2DP22532 72 aa0.12□□□□□ -2.39
UPF3B-203ENST00000478840 MAGI2Q86UL8 1455 aa0.11□□□□□ -2.39
UPF3B-203ENST00000478840 PKD1L3Q7Z443 1732 aa0.11□□□□□ -2.39
UPF3B-203ENST00000478840 PRM1P04553 51 aa0.11□□□□□ -2.39
UPF3B-203ENST00000478840 COX7BP24311 80 aa0.11□□□□□ -2.39
UPF3B-203ENST00000478840 RPL38P63173 70 aaKnown RBP0.11□□□□□ -2.39
UPF3B-203ENST00000478840 RGPD3A6NKT7 1758 aaPredicted RBP0.11□□□□□ -2.39
UPF3B-203ENST00000478840 KMT2AQ03164 3969 aa0.11□□□□□ -2.39
UPF3B-203ENST00000478840 RB1CC1Q8TDY2 1594 aa0.11□□□□□ -2.39
UPF3B-203ENST00000478840 CHD8Q9HCK8 2581 aa0.1□□□□□ -2.39
UPF3B-203ENST00000478840 KANTRA0A1W2PQU2 76 aa0.1□□□□□ -2.39
UPF3B-203ENST00000478840 H1FX-AS1Q4G0G2 97 aa0.09□□□□□ -2.4
UPF3B-203ENST00000478840 SPRR2GQ9BYE4 73 aa0.09□□□□□ -2.4
UPF3B-203ENST00000478840 FLNCQ14315 2725 aa0.09□□□□□ -2.4
UPF3B-203ENST00000478840 GPR98Q8WXG9 6306 aa0.09□□□□□ -2.4
UPF3B-203ENST00000478840 FAT2Q9NYQ8 4349 aa0.09□□□□□ -2.4
UPF3B-203ENST00000478840 CEBPZOSA8MTT3 80 aa0.08□□□□□ -2.4
UPF3B-203ENST00000478840 GAFA1Q96PS6 74 aa0.08□□□□□ -2.4
UPF3B-203ENST00000478840 CDKN2A-AS1Q9UH64 79 aa0.08□□□□□ -2.4
UPF3B-203ENST00000478840 COL14A1Q05707 1796 aaKnown RBP0.08□□□□□ -2.4
UPF3B-203ENST00000478840 EP300Q09472 2414 aaPredicted RBP0.08□□□□□ -2.4
UPF3B-203ENST00000478840 UBR1Q8IWV7 1749 aa0.07□□□□□ -2.4
UPF3B-203ENST00000478840 NDUFB1O75438 58 aa0.07□□□□□ -2.4
UPF3B-203ENST00000478840 UBR3Q6ZT12 1888 aa0.07□□□□□ -2.4
UPF3B-203ENST00000478840 TNXBP22105 4242 aa0.06□□□□□ -2.4
UPF3B-203ENST00000478840 MAP3K4Q9Y6R4 1608 aa0.06□□□□□ -2.4
UPF3B-203ENST00000478840 FSIP2Q5CZC0 6907 aa0.06□□□□□ -2.4
UPF3B-203ENST00000478840 COX6B2Q6YFQ2 88 aa0.06□□□□□ -2.4
UPF3B-203ENST00000478840 PPLO60437 1756 aa0.06□□□□□ -2.4
UPF3B-203ENST00000478840 KIF14Q15058 1648 aa0.05□□□□□ -2.4
UPF3B-203ENST00000478840 NSD1Q96L73 2696 aaPredicted RBP0.05□□□□□ -2.4
UPF3B-203ENST00000478840 LRRC7Q96NW7 1537 aa0.05□□□□□ -2.4
UPF3B-203ENST00000478840 HEPN1Q6WQI6 88 aa0.05□□□□□ -2.4
UPF3B-203ENST00000478840 MYCBP2O75592 4640 aa0.05□□□□□ -2.4
UPF3B-203ENST00000478840 SYNE2Q8WXH0 6885 aaKnown RBP0.05□□□□□ -2.4
UPF3B-203ENST00000478840 QSER1Q2KHR3 1735 aa0.04□□□□□ -2.4
UPF3B-203ENST00000478840 M0R2T5 61 aa0.04□□□□□ -2.4
UPF3B-203ENST00000478840 TDRG1Q3Y452 100 aa0.04□□□□□ -2.4
UPF3B-203ENST00000478840 MAP1BP46821 2468 aaKnown RBP0.04□□□□□ -2.4
UPF3B-203ENST00000478840 MACF1Q9UPN3 7388 aaKnown RBP0.03□□□□□ -2.4
UPF3B-203ENST00000478840 WNK1Q9H4A3 2382 aa0.03□□□□□ -2.4
UPF3B-203ENST00000478840 LPAP08519 4548 aa0.03□□□□□ -2.4
UPF3B-203ENST00000478840 BCORQ6W2J9 1755 aa0.02□□□□□ -2.41
UPF3B-203ENST00000478840 TRAV21A0A0B4J279 112 aa0.02□□□□□ -2.41
UPF3B-203ENST00000478840 S100A13Q99584 98 aa0.02□□□□□ -2.41
UPF3B-203ENST00000478840 MED14O60244 1454 aa0.02□□□□□ -2.41
UPF3B-203ENST00000478840 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.02□□□□□ -2.416e-7■■■■□ 23.1
UPF3B-203ENST00000478840 SSPOA2VEC9 5147 aa0.01□□□□□ -2.41
UPF3B-203ENST00000478840 FLNAP21333 2647 aaKnown RBP0.01□□□□□ -2.41
UPF3B-203ENST00000478840 RGPD8O14715 1765 aaPredicted RBP0.01□□□□□ -2.41
UPF3B-203ENST00000478840 RGPD5Q99666 1765 aa0.01□□□□□ -2.41
UPF3B-203ENST00000478840 APC2O95996 2303 aa0□□□□□ -2.41
UPF3B-203ENST00000478840 RGPD2P0DJD1 1756 aa0□□□□□ -2.41
UPF3B-203ENST00000478840 URB2Q14146 1524 aaKnown RBP0□□□□□ -2.41
UPF3B-203ENST00000478840 ADIRFQ15847 76 aa0□□□□□ -2.41
UPF3B-203ENST00000478840 WFDC9Q8NEX5 89 aa0□□□□□ -2.41
UPF3B-203ENST00000478840 ST20Q9HBF5 79 aa0□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 304.3 ms