RNA–Protein interactions for RNA: ENST00000478021.1

TRAF4-211, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-211ENST00000478021 HIST1H2BHQ93079 126 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 HIST1H2BNQ99877 126 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 HIST1H2BMQ99879 126 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 VPREB1P12018 145 aa13.74□□□□□ -0.21
TRAF4-211ENST00000478021 Q8NDZ9 215 aa13.73□□□□□ -0.21
TRAF4-211ENST00000478021 ZNF861PO60384 105 aa13.72□□□□□ -0.21
TRAF4-211ENST00000478021 UBR4Q5T4S7 5183 aa13.72□□□□□ -0.21
TRAF4-211ENST00000478021 IGKV2-28A0A075B6P5 120 aa13.71□□□□□ -0.21
TRAF4-211ENST00000478021 BCE1O60756 84 aa13.71□□□□□ -0.21
TRAF4-211ENST00000478021 IGKV2D-28P01615 120 aa13.71□□□□□ -0.21
TRAF4-211ENST00000478021 SMIM13P0DJ93 91 aa13.71□□□□□ -0.21
TRAF4-211ENST00000478021 PLNP26678 52 aa13.71□□□□□ -0.21
TRAF4-211ENST00000478021 MEIG1Q5JSS6 88 aa13.71□□□□□ -0.21
TRAF4-211ENST00000478021 DPM2O94777 84 aa13.7□□□□□ -0.22
TRAF4-211ENST00000478021 TSPEAR-AS2P59090 65 aa13.7□□□□□ -0.22
TRAF4-211ENST00000478021 PRR26Q8N8Z3 221 aa13.7□□□□□ -0.22
TRAF4-211ENST00000478021 NDUFA12Q9UI09 145 aa13.7□□□□□ -0.22
TRAF4-211ENST00000478021 KRTAP1-4P0C5Y4 121 aa13.69□□□□□ -0.22
TRAF4-211ENST00000478021 RPL24P83731 157 aaKnown RBP13.69□□□□□ -0.22
TRAF4-211ENST00000478021 MAP1LC3CQ9BXW4 147 aa13.69□□□□□ -0.22
TRAF4-211ENST00000478021 LEPROTO15243 131 aa13.68□□□□□ -0.22
TRAF4-211ENST00000478021 IGKCP01834 107 aa13.68□□□□□ -0.22
TRAF4-211ENST00000478021 ATP6V1G1O75348 118 aa13.67□□□□□ -0.22
TRAF4-211ENST00000478021 HERV-K104P63124 156 aa13.67□□□□□ -0.22
TRAF4-211ENST00000478021 MYMXA0A1B0GTQ4 84 aa13.66□□□□□ -0.22
TRAF4-211ENST00000478021 RPL28P46779 137 aaKnown RBP13.66□□□□□ -0.22
TRAF4-211ENST00000478021 HERVK_113P61574 105 aa13.65□□□□□ -0.22
TRAF4-211ENST00000478021 MIR7-3HGQ8N6C7 128 aa13.65□□□□□ -0.22
TRAF4-211ENST00000478021 PLEKHB2Q96CS7 222 aa13.65□□□□□ -0.22
TRAF4-211ENST00000478021 IGLV1-50A0A075B6I6 118 aa13.64□□□□□ -0.23
TRAF4-211ENST00000478021 UBE2AP49459 152 aa13.63□□□□□ -0.23
TRAF4-211ENST00000478021 TMEM238C9JI98 176 aa13.62□□□□□ -0.23
TRAF4-211ENST00000478021 J3QQQ9 107 aa13.62□□□□□ -0.23
TRAF4-211ENST00000478021 SYS1-DBNDD2H3BUS1 97 aa13.61□□□□□ -0.23
TRAF4-211ENST00000478021 LGALS3P17931 250 aaKnown RBP13.6□□□□□ -0.23
TRAF4-211ENST00000478021 BOD1L2Q8IYS8 172 aa13.6□□□□□ -0.23
TRAF4-211ENST00000478021 TMEM126AQ9H061 195 aa13.6□□□□□ -0.23
TRAF4-211ENST00000478021 LINC00587B1AMM8 73 aa13.59□□□□□ -0.23
TRAF4-211ENST00000478021 KRTAP13-1Q8IUC0 172 aa13.59□□□□□ -0.23
TRAF4-211ENST00000478021 DAND5Q8N907 189 aa13.59□□□□□ -0.23
TRAF4-211ENST00000478021 NCR3O14931 201 aa13.58□□□□□ -0.24
TRAF4-211ENST00000478021 PRLHP81277 87 aa13.58□□□□□ -0.24
TRAF4-211ENST00000478021 FAM19A1Q7Z5A9 133 aa13.58□□□□□ -0.24
TRAF4-211ENST00000478021 M0R378 163 aa13.57□□□□□ -0.24
TRAF4-211ENST00000478021 NMUP48645 174 aa13.55□□□□□ -0.24
TRAF4-211ENST00000478021 COA6Q5JTJ3 125 aaKnown RBP13.54□□□□□ -0.24
TRAF4-211ENST00000478021 LINC01545Q5VT33 79 aa13.54□□□□□ -0.24
TRAF4-211ENST00000478021 E9PLD3 99 aa13.53□□□□□ -0.24
TRAF4-211ENST00000478021 PET117Q6UWS5 81 aa13.53□□□□□ -0.24
TRAF4-211ENST00000478021 C3orf79P0CE67 100 aa13.52□□□□□ -0.25
TRAF4-211ENST00000478021 RPL13AP40429 203 aaKnown RBP13.52□□□□□ -0.25
TRAF4-211ENST00000478021 ANAPC11Q9NYG5 84 aa13.51□□□□□ -0.25
TRAF4-211ENST00000478021 A0A087X002 238 aa13.5□□□□□ -0.25
TRAF4-211ENST00000478021 KRTDAPP60985 99 aa13.5□□□□□ -0.25
TRAF4-211ENST00000478021 A0A0J9YXY3 114 aa13.48□□□□□ -0.25
TRAF4-211ENST00000478021 IGKV2D-26A0A0A0MRZ7 120 aa13.47□□□□□ -0.25
TRAF4-211ENST00000478021 NPC2P61916 151 aa13.47□□□□□ -0.25
TRAF4-211ENST00000478021 LOC107984156A0A0G2JMH3 177 aa13.46□□□□□ -0.25
TRAF4-211ENST00000478021 TRBV10-3A0A0K0K1G6 114 aa13.46□□□□□ -0.25
TRAF4-211ENST00000478021 PRYO14603 147 aa13.46□□□□□ -0.25
TRAF4-211ENST00000478021 ARL17AQ8IVW1 177 aa13.46□□□□□ -0.25
TRAF4-211ENST00000478021 MIEN1Q9BRT3 115 aa13.46□□□□□ -0.25
TRAF4-211ENST00000478021 CRYGAP11844 174 aa13.45□□□□□ -0.26
TRAF4-211ENST00000478021 S100A1P23297 94 aa13.45□□□□□ -0.26
TRAF4-211ENST00000478021 ADAMTSL4-AS1Q5T5F5 129 aa13.45□□□□□ -0.26
TRAF4-211ENST00000478021 HIGD2AQ9BW72 106 aa13.45□□□□□ -0.26
TRAF4-211ENST00000478021 SOSTDC1Q6X4U4 206 aa13.43□□□□□ -0.26
TRAF4-211ENST00000478021 KCNQ1DNQ9H478 68 aa13.43□□□□□ -0.26
TRAF4-211ENST00000478021 EIF4EBP3O60516 100 aaPredicted RBP13.42□□□□□ -0.26
TRAF4-211ENST00000478021 TYMSOSQ8TAI1 123 aa13.42□□□□□ -0.26
TRAF4-211ENST00000478021 TTTY13Q9BZ97 58 aa13.42□□□□□ -0.26
TRAF4-211ENST00000478021 KRTAP13-2Q52LG2 175 aa13.41□□□□□ -0.26
TRAF4-211ENST00000478021 ZNF815PA8K554 130 aa13.4□□□□□ -0.26
TRAF4-211ENST00000478021 DDTP30046 118 aa13.4□□□□□ -0.26
TRAF4-211ENST00000478021 SPRR1AP35321 89 aa13.4□□□□□ -0.26
TRAF4-211ENST00000478021 SPANXB1Q9NS25 103 aaPredicted RBP13.4□□□□□ -0.26
TRAF4-211ENST00000478021 TRBV10-2A0A0K0K1G8 114 aa13.39□□□□□ -0.27
TRAF4-211ENST00000478021 C20orf202A1L168 122 aa13.39□□□□□ -0.27
TRAF4-211ENST00000478021 ETDCA0A1B0GVM5 59 aa13.38□□□□□ -0.27
TRAF4-211ENST00000478021 FAM229BQ4G0N7 80 aa13.38□□□□□ -0.27
TRAF4-211ENST00000478021 ATOH7Q8N100 152 aa13.38□□□□□ -0.27
TRAF4-211ENST00000478021 LINC00337Q8N6G1 96 aa13.38□□□□□ -0.27
TRAF4-211ENST00000478021 LITAFQ99732 161 aa13.38□□□□□ -0.27
TRAF4-211ENST00000478021 LRP2P98164 4655 aa13.38□□□□□ -0.27
TRAF4-211ENST00000478021 KRTAP4-16G5E9R7 235 aaPredicted RBP13.37□□□□□ -0.27
TRAF4-211ENST00000478021 NDUFC2O95298 119 aa13.37□□□□□ -0.27
TRAF4-211ENST00000478021 TSPAN13O95857 204 aa13.36□□□□□ -0.27
TRAF4-211ENST00000478021 S100A12P80511 92 aa13.36□□□□□ -0.27
TRAF4-211ENST00000478021 S100A7L2Q5SY68 101 aa13.35□□□□□ -0.27
TRAF4-211ENST00000478021 ANKRD39Q53RE8 183 aa13.34□□□□□ -0.27
TRAF4-211ENST00000478021 TIMM17BO60830 172 aa13.33□□□□□ -0.28
TRAF4-211ENST00000478021 LINC00308Q8TCZ7 52 aa13.33□□□□□ -0.28
TRAF4-211ENST00000478021 SPRR4Q96PI1 79 aa13.33□□□□□ -0.28
TRAF4-211ENST00000478021 IGLV6-57P01721 117 aa13.32□□□□□ -0.28
TRAF4-211ENST00000478021 HIST3H2BBQ8N257 126 aa13.32□□□□□ -0.28
TRAF4-211ENST00000478021 SMCR5Q8TEV8 140 aa13.32□□□□□ -0.28
TRAF4-211ENST00000478021 B5MCH6 92 aa13.31□□□□□ -0.28
TRAF4-211ENST00000478021 C3orf22Q8N5N4 141 aa13.3□□□□□ -0.28
TRAF4-211ENST00000478021 S100A2P29034 98 aa13.29□□□□□ -0.28
TRAF4-211ENST00000478021 HIST1H2BLQ99880 126 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms