RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 C10orf25Q5T742 122 aa10.01□□□□□ -0.81
HDAC6-220ENST00000477528 LINC00612Q8N6U2 182 aa10.01□□□□□ -0.81
HDAC6-220ENST00000477528 C6orf48Q9UBA6 75 aa10.01□□□□□ -0.81
HDAC6-220ENST00000477528 A0A087WVE0 104 aa10□□□□□ -0.81
HDAC6-220ENST00000477528 HECTD1Q9ULT8 2610 aa10□□□□□ -0.81
HDAC6-220ENST00000477528 KRTAP10-3P60369 221 aa10□□□□□ -0.81
HDAC6-220ENST00000477528 ITPR3Q14573 2671 aa9.98□□□□□ -0.81
HDAC6-220ENST00000477528 NDUFS5O43920 106 aa9.97□□□□□ -0.81
HDAC6-220ENST00000477528 NBEAQ8NFP9 2946 aa9.97□□□□□ -0.81
HDAC6-220ENST00000477528 KRTAP24-1Q3LI83 254 aa9.96□□□□□ -0.81
HDAC6-220ENST00000477528 FAM236DA0A1B0GTK5 79 aa9.96□□□□□ -0.82
HDAC6-220ENST00000477528 FAM236CP0DP71 79 aa9.96□□□□□ -0.82
HDAC6-220ENST00000477528 PRYO14603 147 aa9.95□□□□□ -0.82
HDAC6-220ENST00000477528 A0A096LNI7 61 aa9.95□□□□□ -0.82
HDAC6-220ENST00000477528 H0Y9J4 135 aa9.94□□□□□ -0.82
HDAC6-220ENST00000477528 REG3GQ6UW15 175 aa9.94□□□□□ -0.82
HDAC6-220ENST00000477528 F8P00451 2351 aa9.94□□□□□ -0.82
HDAC6-220ENST00000477528 GVQW2A0A096LPI5 108 aaPredicted RBP9.93□□□□□ -0.82
HDAC6-220ENST00000477528 LINC00474Q9P2X8 69 aa9.93□□□□□ -0.82
HDAC6-220ENST00000477528 C1orf137Q5JT78 98 aa9.93□□□□□ -0.82
HDAC6-220ENST00000477528 MRPL55Q7Z7F7 128 aaKnown RBP9.93□□□□□ -0.82
HDAC6-220ENST00000477528 Q6ZVQ6 151 aa9.92□□□□□ -0.82
HDAC6-220ENST00000477528 BOD1L1Q8NFC6 3051 aa9.92□□□□□ -0.82
HDAC6-220ENST00000477528 FAM104AQ969W3 186 aa9.92□□□□□ -0.82
HDAC6-220ENST00000477528 TRBV7-6A0A0J9YX20 115 aa9.91□□□□□ -0.82
HDAC6-220ENST00000477528 TRAV7A0A075B6U4 112 aa9.91□□□□□ -0.82
HDAC6-220ENST00000477528 NDUFC1O43677 76 aa9.91□□□□□ -0.82
HDAC6-220ENST00000477528 NUPR2A6NF83 97 aa9.9□□□□□ -0.82
HDAC6-220ENST00000477528 CR1P17927 2039 aa9.9□□□□□ -0.82
HDAC6-220ENST00000477528 KIAA0087Q14695 138 aa9.9□□□□□ -0.82
HDAC6-220ENST00000477528 CFAP46Q8IYW2 2715 aa9.9□□□□□ -0.83
HDAC6-220ENST00000477528 M0R2N4 97 aa9.89□□□□□ -0.83
HDAC6-220ENST00000477528 C7orf33Q8WU49 177 aa9.89□□□□□ -0.83
HDAC6-220ENST00000477528 USP24Q9UPU5 2620 aa9.89□□□□□ -0.83
HDAC6-220ENST00000477528 ELOF1P60002 83 aaKnown RBP9.89□□□□□ -0.83
HDAC6-220ENST00000477528 SNURFQ9Y675 71 aa9.89□□□□□ -0.83
HDAC6-220ENST00000477528 LINC01547P58512 204 aaPredicted RBP9.88□□□□□ -0.83
HDAC6-220ENST00000477528 PRR34Q9NV39 138 aa9.88□□□□□ -0.83
HDAC6-220ENST00000477528 C22orf24Q9Y442 160 aa9.87□□□□□ -0.83
HDAC6-220ENST00000477528 IGSF10Q6WRI0 2623 aa9.86□□□□□ -0.83
HDAC6-220ENST00000477528 SPATA3Q8NHX4 192 aa9.86□□□□□ -0.83
HDAC6-220ENST00000477528 ADGRG4Q8IZF6 3080 aa9.86□□□□□ -0.83
HDAC6-220ENST00000477528 IGLV6-57P01721 117 aa9.86□□□□□ -0.83
HDAC6-220ENST00000477528 CXCL6P80162 114 aa9.85□□□□□ -0.83
HDAC6-220ENST00000477528 FREM2Q5SZK8 3169 aa9.85□□□□□ -0.83
HDAC6-220ENST00000477528 ZNF706Q9Y5V0 76 aaPredicted RBP9.84□□□□□ -0.83
HDAC6-220ENST00000477528 FLNBO75369 2602 aaKnown RBP9.84□□□□□ -0.83
HDAC6-220ENST00000477528 ATP5EP56381 51 aaPredicted RBP9.84□□□□□ -0.83
HDAC6-220ENST00000477528 USP34Q70CQ2 3546 aa9.84□□□□□ -0.83
HDAC6-220ENST00000477528 LOC110117498A0A087WWA1 95 aa9.84□□□□□ -0.83
HDAC6-220ENST00000477528 Q6ZQT0 140 aa9.84□□□□□ -0.83
HDAC6-220ENST00000477528 MAP1AP78559 2803 aaPredicted RBP9.83□□□□□ -0.84
HDAC6-220ENST00000477528 VPREB1P12018 145 aa9.82□□□□□ -0.84
HDAC6-220ENST00000477528 KRTAP10-11P60412 298 aa9.82□□□□□ -0.84
HDAC6-220ENST00000477528 LINC00167Q96N53 147 aa9.82□□□□□ -0.84
HDAC6-220ENST00000477528 HELZ2Q9BYK8 2649 aaKnown RBP9.82□□□□□ -0.84
HDAC6-220ENST00000477528 DNAH10OSP0CZ25 163 aa9.82□□□□□ -0.84
HDAC6-220ENST00000477528 LINC00588Q9Y4M8 146 aa9.82□□□□□ -0.84
HDAC6-220ENST00000477528 WFDC13Q8IUB5 93 aa9.81□□□□□ -0.84
HDAC6-220ENST00000477528 DMXL2Q8TDJ6 3036 aa9.81□□□□□ -0.84
HDAC6-220ENST00000477528 SMCR5Q8TEV8 140 aa9.81□□□□□ -0.84
HDAC6-220ENST00000477528 MYO15AQ9UKN7 3530 aa9.8□□□□□ -0.84
HDAC6-220ENST00000477528 Q6ZRP5 223 aa9.79□□□□□ -0.84
HDAC6-220ENST00000477528 LINC01600Q96MT4 127 aa9.79□□□□□ -0.84
HDAC6-220ENST00000477528 Q9BRP9 147 aa9.78□□□□□ -0.84
HDAC6-220ENST00000477528 FAM30AQ9NZY2 134 aa9.78□□□□□ -0.84
HDAC6-220ENST00000477528 ATMQ13315 3056 aa9.77□□□□□ -0.85
HDAC6-220ENST00000477528 PRLHP81277 87 aa9.77□□□□□ -0.85
HDAC6-220ENST00000477528 C4orf48Q5BLP8 95 aa9.76□□□□□ -0.85
HDAC6-220ENST00000477528 IGLV9-49A0A0B4J1Y8 123 aa9.76□□□□□ -0.85
HDAC6-220ENST00000477528 NHLRC4P0CG21 123 aaPredicted RBP9.76□□□□□ -0.85
HDAC6-220ENST00000477528 Q6ZRX8 168 aa9.76□□□□□ -0.85
HDAC6-220ENST00000477528 ATRQ13535 2644 aa9.76□□□□□ -0.85
HDAC6-220ENST00000477528 CRYGAP11844 174 aa9.76□□□□□ -0.85
HDAC6-220ENST00000477528 BCE1O60756 84 aa9.75□□□□□ -0.85
HDAC6-220ENST00000477528 C15orf56Q8N910 161 aa9.74□□□□□ -0.85
HDAC6-220ENST00000477528 A0A087WSZ3 146 aa9.74□□□□□ -0.85
HDAC6-220ENST00000477528 A0A1B0GW54 56 aa9.74□□□□□ -0.85
HDAC6-220ENST00000477528 LY6G6CO95867 125 aa9.74□□□□□ -0.85
HDAC6-220ENST00000477528 IGKV4-1P06312 121 aa9.72□□□□□ -0.85
HDAC6-220ENST00000477528 DMXL1Q9Y485 3027 aa9.72□□□□□ -0.85
HDAC6-220ENST00000477528 LRBAP50851 2863 aa9.72□□□□□ -0.85
HDAC6-220ENST00000477528 HRCT1Q6UXD1 115 aa9.72□□□□□ -0.85
HDAC6-220ENST00000477528 Q8N9L7 120 aa9.71□□□□□ -0.85
HDAC6-220ENST00000477528 FLNCQ14315 2725 aa9.7□□□□□ -0.86
HDAC6-220ENST00000477528 LINC00528Q8N1L1 170 aa9.7□□□□□ -0.86
HDAC6-220ENST00000477528 TMEM254Q8TBM7 123 aa9.7□□□□□ -0.86
HDAC6-220ENST00000477528 SERP1Q9Y6X1 66 aa9.7□□□□□ -0.86
HDAC6-220ENST00000477528 KCNQ1DNQ9H478 68 aa9.7□□□□□ -0.86
HDAC6-220ENST00000477528 KALRNO60229 2985 aa9.69□□□□□ -0.86
HDAC6-220ENST00000477528 MDFIQ99750 246 aa9.69□□□□□ -0.86
HDAC6-220ENST00000477528 SERTAD4-AS1Q5TG53 156 aa9.68□□□□□ -0.86
HDAC6-220ENST00000477528 C16orf90A8MZG2 172 aa9.68□□□□□ -0.86
HDAC6-220ENST00000477528 MPLKIPQ8TAP9 179 aa9.68□□□□□ -0.86
HDAC6-220ENST00000477528 LOC400499M0QZD8 3231 aa9.68□□□□□ -0.86
HDAC6-220ENST00000477528 LRCOL1A6NCL2 159 aa9.68□□□□□ -0.86
HDAC6-220ENST00000477528 Q8NBF4 154 aa9.67□□□□□ -0.86
HDAC6-220ENST00000477528 IGLV5-52A0A0A0MRZ9 124 aa9.67□□□□□ -0.86
HDAC6-220ENST00000477528 K7EIL1 84 aa9.67□□□□□ -0.86
HDAC6-220ENST00000477528 C9orf129Q5T035 196 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms