RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 EIF4EBP3O60516 100 aaPredicted RBP4.35□□□□□ -1.71
LIMD1-204ENST00000474665 SMIM13P0DJ93 91 aa4.35□□□□□ -1.71
LIMD1-204ENST00000474665 HERVK_113P61574 105 aa4.35□□□□□ -1.71
LIMD1-204ENST00000474665 LINC00528Q8N1L1 170 aa4.35□□□□□ -1.71
LIMD1-204ENST00000474665 DPH3Q96FX2 82 aa4.35□□□□□ -1.71
LIMD1-204ENST00000474665 SND1-IT1Q9HBX3 110 aa4.35□□□□□ -1.71
LIMD1-204ENST00000474665 PKIGQ9Y2B9 76 aa4.35□□□□□ -1.71
LIMD1-204ENST00000474665 A0A0J9YXY3 114 aa4.34□□□□□ -1.71
LIMD1-204ENST00000474665 A0A0U1RRA0 63 aa4.34□□□□□ -1.71
LIMD1-204ENST00000474665 MYMXA0A1B0GTQ4 84 aa4.34□□□□□ -1.71
LIMD1-204ENST00000474665 C20orf202A1L168 122 aa4.34□□□□□ -1.71
LIMD1-204ENST00000474665 OXTP01178 125 aa4.34□□□□□ -1.71
LIMD1-204ENST00000474665 LGALS3P17931 250 aaKnown RBP4.34□□□□□ -1.71
LIMD1-204ENST00000474665 COX17Q14061 63 aa4.34□□□□□ -1.71
LIMD1-204ENST00000474665 ADAMTSL4-AS1Q5T5F5 129 aa4.34□□□□□ -1.71
LIMD1-204ENST00000474665 PHF5AQ7RTV0 110 aaKnown RBP4.34□□□□□ -1.71
LIMD1-204ENST00000474665 PCP2Q8IVA1 136 aa4.34□□□□□ -1.71
LIMD1-204ENST00000474665 LITAFQ99732 161 aa4.34□□□□□ -1.71
LIMD1-204ENST00000474665 NMUP48645 174 aa4.33□□□□□ -1.72
LIMD1-204ENST00000474665 HNRNPA3P51991 378 aaKnown RBP4.33□□□□□ -1.72
LIMD1-204ENST00000474665 LINC00158P58513 81 aa4.33□□□□□ -1.72
LIMD1-204ENST00000474665 HERV-K104P63124 156 aa4.33□□□□□ -1.72
LIMD1-204ENST00000474665 SFTA2Q6UW10 78 aa4.33□□□□□ -1.72
LIMD1-204ENST00000474665 FAM19A5Q7Z5A7 132 aaPredicted RBP4.33□□□□□ -1.72
LIMD1-204ENST00000474665 DAND5Q8N907 189 aa4.33□□□□□ -1.72
LIMD1-204ENST00000474665 TP73-AS1Q9UF72 201 aa4.33□□□□□ -1.72
LIMD1-204ENST00000474665 FAT3Q8TDW7 4589 aa4.33□□□□□ -1.72
LIMD1-204ENST00000474665 SCGB1D1O95968 90 aa4.32□□□□□ -1.72
LIMD1-204ENST00000474665 PLA2G1BP04054 148 aaKnown RBP4.32□□□□□ -1.72
LIMD1-204ENST00000474665 VPREB1P12018 145 aa4.32□□□□□ -1.72
LIMD1-204ENST00000474665 JOSD1Q15040 202 aaPredicted RBP4.32□□□□□ -1.72
LIMD1-204ENST00000474665 PYY3Q5JQD4 70 aa4.32□□□□□ -1.72
LIMD1-204ENST00000474665 SOSTDC1Q6X4U4 206 aa4.32□□□□□ -1.72
LIMD1-204ENST00000474665 MIR7-3HGQ8N6C7 128 aa4.32□□□□□ -1.72
LIMD1-204ENST00000474665 C22orf24Q9Y442 160 aa4.32□□□□□ -1.72
LIMD1-204ENST00000474665 IGLV5-37A0A075B6J1 123 aa4.31□□□□□ -1.72
LIMD1-204ENST00000474665 LOC107984156A0A0G2JMH3 177 aa4.31□□□□□ -1.72
LIMD1-204ENST00000474665 ZNF815PA8K554 130 aa4.31□□□□□ -1.72
LIMD1-204ENST00000474665 M0QXV9 152 aa4.31□□□□□ -1.72
LIMD1-204ENST00000474665 PRR3P79522 188 aaKnown RBP4.31□□□□□ -1.72
LIMD1-204ENST00000474665 MEIG1Q5JSS6 88 aa4.31□□□□□ -1.72
LIMD1-204ENST00000474665 ARL17AQ8IVW1 177 aa4.31□□□□□ -1.72
LIMD1-204ENST00000474665 AKR1D1P51857 326 aa4.3□□□□□ -1.72
LIMD1-204ENST00000474665 RPL37AP61513 92 aaKnown RBP4.3□□□□□ -1.72
LIMD1-204ENST00000474665 C7orf33Q8WU49 177 aa4.3□□□□□ -1.72
LIMD1-204ENST00000474665 PSORS1C2Q9UIG4 136 aa4.3□□□□□ -1.72
LIMD1-204ENST00000474665 TIMM17BO60830 172 aa4.29□□□□□ -1.72
LIMD1-204ENST00000474665 MRPL55Q7Z7F7 128 aaKnown RBP4.29□□□□□ -1.72
LIMD1-204ENST00000474665 LINC00167Q96N53 147 aa4.29□□□□□ -1.72
LIMD1-204ENST00000474665 CRCT1Q9UGL9 99 aa4.29□□□□□ -1.72
LIMD1-204ENST00000474665 GAGE10A6NGK3 116 aa4.28□□□□□ -1.72
LIMD1-204ENST00000474665 RPL37AP8A6NKH3 93 aa4.28□□□□□ -1.72
LIMD1-204ENST00000474665 LINC00587B1AMM8 73 aa4.28□□□□□ -1.72
LIMD1-204ENST00000474665 BOD1L2Q8IYS8 172 aa4.28□□□□□ -1.72
LIMD1-204ENST00000474665 TNXBP22105 4242 aa4.28□□□□□ -1.72
LIMD1-204ENST00000474665 COX8AP10176 69 aa4.27□□□□□ -1.73
LIMD1-204ENST00000474665 NPC2P61916 151 aa4.27□□□□□ -1.73
LIMD1-204ENST00000474665 SRSF9Q13242 221 aaKnown RBP eCLIP4.27□□□□□ -1.73
LIMD1-204ENST00000474665 LINC00308Q8TCZ7 52 aa4.27□□□□□ -1.73
LIMD1-204ENST00000474665 C14orf144Q96I85 54 aa4.27□□□□□ -1.73
LIMD1-204ENST00000474665 PAM16Q9Y3D7 125 aa4.27□□□□□ -1.73
LIMD1-204ENST00000474665 IGLV1-50A0A075B6I6 118 aa4.26□□□□□ -1.73
LIMD1-204ENST00000474665 IGKV2-28A0A075B6P5 120 aa4.26□□□□□ -1.73
LIMD1-204ENST00000474665 HSBP1L1C9JCN9 74 aa4.26□□□□□ -1.73
LIMD1-204ENST00000474665 IGKV2D-28P01615 120 aa4.26□□□□□ -1.73
LIMD1-204ENST00000474665 SPATA45Q537H7 98 aa4.26□□□□□ -1.73
LIMD1-204ENST00000474665 SCGB1D4Q6XE38 83 aa4.26□□□□□ -1.73
LIMD1-204ENST00000474665 NKAPP1Q8N9T2 125 aa4.26□□□□□ -1.73
LIMD1-204ENST00000474665 SPANXDQ9BXN6 97 aa4.26□□□□□ -1.73
LIMD1-204ENST00000474665 SPANXCQ9NY87 97 aa4.26□□□□□ -1.73
LIMD1-204ENST00000474665 FSIP2Q5CZC0 6907 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 TRBV10-3A0A0K0K1G6 114 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 LOC105371267A0A1B0GV96 52 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 TMEM238C9JI98 176 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 M0R378 163 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 NCR3O14931 201 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 DLEU1O43261 78 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 MT1HL1P0DM35 61 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 UBE2BP63146 152 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 RPL24P83731 157 aaKnown RBP4.25□□□□□ -1.73
LIMD1-204ENST00000474665 LBHQ53QV2 105 aaPredicted RBP4.25□□□□□ -1.73
LIMD1-204ENST00000474665 C1orf137Q5JT78 98 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 C2orf91Q6ZV80 131 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 KRTAP13-1Q8IUC0 172 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 VAMP8Q9BV40 100 aa4.25□□□□□ -1.73
LIMD1-204ENST00000474665 TRBV10-2A0A0K0K1G8 114 aa4.24□□□□□ -1.73
LIMD1-204ENST00000474665 KRTAP4-16G5E9R7 235 aaPredicted RBP4.24□□□□□ -1.73
LIMD1-204ENST00000474665 NDUFC2O95298 119 aa4.24□□□□□ -1.73
LIMD1-204ENST00000474665 IGLV7-43P04211 117 aa4.24□□□□□ -1.73
LIMD1-204ENST00000474665 MUSTN1Q8IVN3 82 aa4.24□□□□□ -1.73
LIMD1-204ENST00000474665 IGLV6-57P01721 117 aa4.23□□□□□ -1.73
LIMD1-204ENST00000474665 LINC00337Q8N6G1 96 aa4.23□□□□□ -1.73
LIMD1-204ENST00000474665 PPDPFQ9H3Y8 114 aa4.23□□□□□ -1.73
LIMD1-204ENST00000474665 KCNQ1DNQ9H478 68 aa4.23□□□□□ -1.73
LIMD1-204ENST00000474665 SPANXB1Q9NS25 103 aaPredicted RBP4.23□□□□□ -1.73
LIMD1-204ENST00000474665 BCE1O60756 84 aa4.22□□□□□ -1.73
LIMD1-204ENST00000474665 IFITM1P13164 125 aa4.22□□□□□ -1.73
LIMD1-204ENST00000474665 SPRR1AP35321 89 aa4.22□□□□□ -1.73
LIMD1-204ENST00000474665 LCE2AQ5TA79 106 aaPredicted RBP4.22□□□□□ -1.73
LIMD1-204ENST00000474665 Q6ZVH6 145 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms