RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MED13LQ71F56 2210 aa3.71□□□□□ -1.82
SYNE1-220ENST00000471834 DCHS2Q6V1P9 2916 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 PDE6GP18545 87 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 Q6ZSN1 163 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 VPS13AQ96RL7 3174 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 ZFYVE26Q68DK2 2539 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 Q6ZSV7 163 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 ZCCHC13Q8WW36 166 aaKnown RBP3.7□□□□□ -1.82
SYNE1-220ENST00000471834 BBC3Q96PG8 261 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-220ENST00000471834 COX6A2Q02221 97 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 HIGD2AQ9BW72 106 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 ODF3L2Q3SX64 289 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 C9orf129Q5T035 196 aaKnown RBP3.7□□□□□ -1.82
SYNE1-220ENST00000471834 LINC01006Q8NI28 216 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 ZNF702PQ9H963 129 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 PRO0255Q9UI72 69 aa3.7□□□□□ -1.82
SYNE1-220ENST00000471834 VCANP13611 3396 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 USP34Q70CQ2 3546 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 JMJD1CQ15652 2540 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 BPY2O14599 106 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 PRYO14603 147 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 SMIM11BQ8TCY0 68 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 ATP5EP56381 51 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-220ENST00000471834 Q8IZM0 81 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 XAGE1AQ9HD64 81 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 TRBV6-8A0A0A6YYG3 113 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 TLN2Q9Y4G6 2542 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 ARHGAP32A7KAX9 2087 aa3.69□□□□□ -1.82
SYNE1-220ENST00000471834 TACC2O95359 2948 aa3.68□□□□□ -1.82
SYNE1-220ENST00000471834 IGSF10Q6WRI0 2623 aa3.68□□□□□ -1.82
SYNE1-220ENST00000471834 CCKP06307 115 aa3.68□□□□□ -1.82
SYNE1-220ENST00000471834 CENPEQ02224 2701 aa3.68□□□□□ -1.82
SYNE1-220ENST00000471834 DMXL2Q8TDJ6 3036 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 CXCL6P80162 114 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 TNP2Q05952 138 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 LINC00336Q6ZUF6 198 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 SPINK6Q6UWN8 80 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 PRO0628Q9UI54 55 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 BOD1L1Q8NFC6 3051 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 ZANQ9Y493 2812 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 FP248Q71RG6 208 aaPredicted RBP3.67□□□□□ -1.82
SYNE1-220ENST00000471834 COX17Q14061 63 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 AVPP01185 164 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 PRUNE2Q8WUY3 3088 aa3.67□□□□□ -1.82
SYNE1-220ENST00000471834 KALRNO60229 2985 aa3.66□□□□□ -1.82
SYNE1-220ENST00000471834 C9orf116Q5BN46 136 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-220ENST00000471834 FHL2Q14192 279 aa3.66□□□□□ -1.82
SYNE1-220ENST00000471834 PRR34Q9NV39 138 aa3.66□□□□□ -1.82
SYNE1-220ENST00000471834 A0A087WYN8 130 aa3.66□□□□□ -1.82
SYNE1-220ENST00000471834 PRR3P79522 188 aaKnown RBP3.66□□□□□ -1.82
SYNE1-220ENST00000471834 C20orf197Q8N268 126 aa3.66□□□□□ -1.82
SYNE1-220ENST00000471834 KRTAP24-1Q3LI83 254 aa3.66□□□□□ -1.82
SYNE1-220ENST00000471834 WNK1Q9H4A3 2382 aa3.65□□□□□ -1.82
SYNE1-220ENST00000471834 SMIM26A0A096LP01 95 aa3.65□□□□□ -1.82
SYNE1-220ENST00000471834 Q6ZQT0 140 aa3.65□□□□□ -1.82
SYNE1-220ENST00000471834 MDFIQ99750 246 aa3.65□□□□□ -1.82
SYNE1-220ENST00000471834 PRRC2AP48634 2157 aaKnown RBP3.65□□□□□ -1.82
SYNE1-220ENST00000471834 TRAV7A0A075B6U4 112 aa3.65□□□□□ -1.82
SYNE1-220ENST00000471834 IGLV6-57P01721 117 aa3.65□□□□□ -1.82
SYNE1-220ENST00000471834 KRTAP10-9P60411 292 aa3.65□□□□□ -1.82
SYNE1-220ENST00000471834 WFDC13Q8IUB5 93 aa3.65□□□□□ -1.82
SYNE1-220ENST00000471834 MUC3AQ02505 3323 aa3.65□□□□□ -1.83
SYNE1-220ENST00000471834 NIPBLQ6KC79 2804 aaeCLIP3.65□□□□□ -1.83
SYNE1-220ENST00000471834 LINC00959A0A1B0GUT2 108 aa3.65□□□□□ -1.83
SYNE1-220ENST00000471834 K7ERS5 55 aa3.65□□□□□ -1.83
SYNE1-220ENST00000471834 NDUFC1O43677 76 aa3.65□□□□□ -1.83
SYNE1-220ENST00000471834 KPRPQ5T749 579 aaPredicted RBP3.65□□□□□ -1.83
SYNE1-220ENST00000471834 IGLV5-48A0A075B6I7 105 aa3.64□□□□□ -1.83
SYNE1-220ENST00000471834 CIRBP-AS1Q8TBR5 109 aa3.64□□□□□ -1.83
SYNE1-220ENST00000471834 MAP1AP78559 2803 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-220ENST00000471834 C6orf99Q4VX62 202 aa3.64□□□□□ -1.83
SYNE1-220ENST00000471834 SERP1Q9Y6X1 66 aa3.64□□□□□ -1.83
SYNE1-220ENST00000471834 CYP4F30PQ9H0H9 118 aa3.64□□□□□ -1.83
SYNE1-220ENST00000471834 SPTBN5Q9NRC6 3674 aaKnown RBP3.64□□□□□ -1.83
SYNE1-220ENST00000471834 DEFB116Q30KQ4 102 aa3.64□□□□□ -1.83
SYNE1-220ENST00000471834 F8WDY8 70 aa3.63□□□□□ -1.83
SYNE1-220ENST00000471834 M0R2T5 61 aa3.63□□□□□ -1.83
SYNE1-220ENST00000471834 OCR1Q9BZK8 76 aa3.63□□□□□ -1.83
SYNE1-220ENST00000471834 PRR15LQ9BU68 103 aa3.63□□□□□ -1.83
SYNE1-220ENST00000471834 C10orf25Q5T742 122 aa3.63□□□□□ -1.83
SYNE1-220ENST00000471834 Q8N814 137 aa3.63□□□□□ -1.83
SYNE1-220ENST00000471834 UTP20O75691 2785 aaKnown RBP3.63□□□□□ -1.83
SYNE1-220ENST00000471834 LINC00575Q6W349 94 aa3.62□□□□□ -1.83
SYNE1-220ENST00000471834 Q8NDZ9 215 aa3.62□□□□□ -1.83
SYNE1-220ENST00000471834 CFAP47Q6ZTR5 3102 aa3.62□□□□□ -1.83
SYNE1-220ENST00000471834 PMAIP1Q13794 54 aa3.62□□□□□ -1.83
SYNE1-220ENST00000471834 ESRGQ1W209 222 aa3.62□□□□□ -1.83
SYNE1-220ENST00000471834 WDFY4Q6ZS81 3184 aa3.62□□□□□ -1.83
SYNE1-220ENST00000471834 M0R378 163 aa3.62□□□□□ -1.83
SYNE1-220ENST00000471834 KRTAP26-1Q6PEX3 210 aa3.62□□□□□ -1.83
SYNE1-220ENST00000471834 CSPG4Q6UVK1 2322 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 COL6A3P12111 3177 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 SPRR1AP35321 89 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 Q6ZRU5 148 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 LIMD2Q9BT23 127 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 ABCA12Q86UK0 2595 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 SYCNQ0VAF6 134 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 SPTBN4Q9H254 2564 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 A6NED7 52 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 C1orf137Q5JT78 98 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms