RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 LINC00167Q96N53 147 aa13.08□□□□□ -0.32
LIME1-203ENST00000465591 ZNF861PO60384 105 aa13.07□□□□□ -0.32
LIME1-203ENST00000465591 GAGE10A6NGK3 116 aa13.06□□□□□ -0.32
LIME1-203ENST00000465591 RPL37AP8A6NKH3 93 aa13.06□□□□□ -0.32
LIME1-203ENST00000465591 S100A2P29034 98 aa13.06□□□□□ -0.32
LIME1-203ENST00000465591 PFN2P35080 140 aa13.06□□□□□ -0.32
LIME1-203ENST00000465591 PET117Q6UWS5 81 aa13.06□□□□□ -0.32
LIME1-203ENST00000465591 IGLV5-37A0A075B6J1 123 aa13.05□□□□□ -0.32
LIME1-203ENST00000465591 TMEM223A0PJW6 202 aa13.04□□□□□ -0.32
LIME1-203ENST00000465591 IGKCP01834 107 aa13.04□□□□□ -0.32
LIME1-203ENST00000465591 ZNF625Q96I27 306 aaPredicted RBP13.04□□□□□ -0.32
LIME1-203ENST00000465591 KRTDAPP60985 99 aa13.03□□□□□ -0.32
LIME1-203ENST00000465591 PMCHL2Q9BQD1 86 aa13.03□□□□□ -0.32
LIME1-203ENST00000465591 ERG28Q9UKR5 140 aa13.03□□□□□ -0.32
LIME1-203ENST00000465591 IGLV1-50A0A075B6I6 118 aa13.02□□□□□ -0.33
LIME1-203ENST00000465591 C3orf79P0CE67 100 aa13.02□□□□□ -0.33
LIME1-203ENST00000465591 HIST3H2BBQ8N257 126 aa13.02□□□□□ -0.33
LIME1-203ENST00000465591 BCE1O60756 84 aa13.01□□□□□ -0.33
LIME1-203ENST00000465591 HERVK_113P61574 105 aa13.01□□□□□ -0.33
LIME1-203ENST00000465591 SFTA2Q6UW10 78 aa13.01□□□□□ -0.33
LIME1-203ENST00000465591 SND1-IT1Q9HBX3 110 aa13.01□□□□□ -0.33
LIME1-203ENST00000465591 LINC01545Q5VT33 79 aa13□□□□□ -0.33
LIME1-203ENST00000465591 Q8NDZ9 215 aa13□□□□□ -0.33
LIME1-203ENST00000465591 C20orf202A1L168 122 aa12.99□□□□□ -0.33
LIME1-203ENST00000465591 VPREB1P12018 145 aa12.99□□□□□ -0.33
LIME1-203ENST00000465591 NKAPP1Q8N9T2 125 aa12.99□□□□□ -0.33
LIME1-203ENST00000465591 SNRPEP62304 92 aaKnown RBP12.98□□□□□ -0.33
LIME1-203ENST00000465591 HIST1H2BLQ99880 126 aa12.98□□□□□ -0.33
LIME1-203ENST00000465591 RPL28P46779 137 aaKnown RBP12.96□□□□□ -0.33
LIME1-203ENST00000465591 AKR1D1P51857 326 aa12.96□□□□□ -0.33
LIME1-203ENST00000465591 COX17Q14061 63 aa12.96□□□□□ -0.33
LIME1-203ENST00000465591 PLEKHB2Q96CS7 222 aa12.96□□□□□ -0.33
LIME1-203ENST00000465591 IGKV2-28A0A075B6P5 120 aa12.95□□□□□ -0.34
LIME1-203ENST00000465591 C5orf52A6NGY3 159 aa12.95□□□□□ -0.34
LIME1-203ENST00000465591 IGKV2D-28P01615 120 aa12.95□□□□□ -0.34
LIME1-203ENST00000465591 KRTAP13-1Q8IUC0 172 aa12.95□□□□□ -0.34
LIME1-203ENST00000465591 LEPROTO15243 131 aa12.94□□□□□ -0.34
LIME1-203ENST00000465591 LPAP08519 4548 aa12.93□□□□□ -0.34
LIME1-203ENST00000465591 A0A087X002 238 aa12.91□□□□□ -0.34
LIME1-203ENST00000465591 A0A0U1RRA0 63 aa12.91□□□□□ -0.34
LIME1-203ENST00000465591 RPL13AP40429 203 aaKnown RBP12.91□□□□□ -0.34
LIME1-203ENST00000465591 MYMXA0A1B0GTQ4 84 aa12.9□□□□□ -0.34
LIME1-203ENST00000465591 TMEM238C9JI98 176 aa12.9□□□□□ -0.34
LIME1-203ENST00000465591 J3QQQ9 107 aa12.9□□□□□ -0.34
LIME1-203ENST00000465591 LINC00158P58513 81 aa12.9□□□□□ -0.34
LIME1-203ENST00000465591 HERV-K104P63124 156 aa12.9□□□□□ -0.34
LIME1-203ENST00000465591 NDUFA12Q9UI09 145 aa12.9□□□□□ -0.34
LIME1-203ENST00000465591 E9PLD3 99 aa12.89□□□□□ -0.35
LIME1-203ENST00000465591 LGALS3P17931 250 aaKnown RBP12.89□□□□□ -0.35
LIME1-203ENST00000465591 ANAPC11Q9NYG5 84 aa12.89□□□□□ -0.35
LIME1-203ENST00000465591 UBE2AP49459 152 aa12.88□□□□□ -0.35
LIME1-203ENST00000465591 RPL24P83731 157 aaKnown RBP12.88□□□□□ -0.35
LIME1-203ENST00000465591 LINC00587B1AMM8 73 aa12.87□□□□□ -0.35
LIME1-203ENST00000465591 NMUP48645 174 aa12.87□□□□□ -0.35
LIME1-203ENST00000465591 PRLHP81277 87 aa12.87□□□□□ -0.35
LIME1-203ENST00000465591 TMEM126AQ9H061 195 aa12.87□□□□□ -0.35
LIME1-203ENST00000465591 RNF213Q63HN8 5207 aa12.87□□□□□ -0.35
LIME1-203ENST00000465591 SMIM13P0DJ93 91 aa12.86□□□□□ -0.35
LIME1-203ENST00000465591 M0R378 163 aa12.85□□□□□ -0.35
LIME1-203ENST00000465591 TSPEAR-AS2P59090 65 aa12.85□□□□□ -0.35
LIME1-203ENST00000465591 MEIG1Q5JSS6 88 aa12.84□□□□□ -0.35
LIME1-203ENST00000465591 FAM19A1Q7Z5A9 133 aa12.83□□□□□ -0.36
LIME1-203ENST00000465591 ATOH7Q8N100 152 aa12.82□□□□□ -0.36
LIME1-203ENST00000465591 TMA7Q9Y2S6 64 aaKnown RBP12.82□□□□□ -0.36
LIME1-203ENST00000465591 CRYGAP11844 174 aa12.81□□□□□ -0.36
LIME1-203ENST00000465591 KRTAP13-2Q52LG2 175 aa12.81□□□□□ -0.36
LIME1-203ENST00000465591 MIR7-3HGQ8N6C7 128 aa12.81□□□□□ -0.36
LIME1-203ENST00000465591 SCGB1D1O95968 90 aa12.8□□□□□ -0.36
LIME1-203ENST00000465591 TYMSOSQ8TAI1 123 aa12.79□□□□□ -0.36
LIME1-203ENST00000465591 TSPAN13O95857 204 aa12.78□□□□□ -0.36
LIME1-203ENST00000465591 BOD1L2Q8IYS8 172 aa12.78□□□□□ -0.36
LIME1-203ENST00000465591 HSBP1L1C9JCN9 74 aa12.77□□□□□ -0.37
LIME1-203ENST00000465591 IGKV2D-26A0A0A0MRZ7 120 aa12.76□□□□□ -0.37
LIME1-203ENST00000465591 NCR3O14931 201 aa12.75□□□□□ -0.37
LIME1-203ENST00000465591 ANKRD39Q53RE8 183 aa12.75□□□□□ -0.37
LIME1-203ENST00000465591 A0A0J9YXY3 114 aa12.74□□□□□ -0.37
LIME1-203ENST00000465591 ZNF815PA8K554 130 aa12.74□□□□□ -0.37
LIME1-203ENST00000465591 FAM229BQ4G0N7 80 aa12.74□□□□□ -0.37
LIME1-203ENST00000465591 PRR4Q16378 134 aa12.73□□□□□ -0.37
LIME1-203ENST00000465591 DAND5Q8N907 189 aa12.73□□□□□ -0.37
LIME1-203ENST00000465591 HIGD2AQ9BW72 106 aa12.71□□□□□ -0.37
LIME1-203ENST00000465591 PRYO14603 147 aa12.69□□□□□ -0.38
LIME1-203ENST00000465591 TRBV10-3A0A0K0K1G6 114 aa12.68□□□□□ -0.38
LIME1-203ENST00000465591 TIMM17BO60830 172 aa12.68□□□□□ -0.38
LIME1-203ENST00000465591 SPRR1AP35321 89 aa12.68□□□□□ -0.38
LIME1-203ENST00000465591 MIEN1Q9BRT3 115 aa12.68□□□□□ -0.38
LIME1-203ENST00000465591 TTTY13Q9BZ97 58 aa12.68□□□□□ -0.38
LIME1-203ENST00000465591 KCNQ1DNQ9H478 68 aa12.68□□□□□ -0.38
LIME1-203ENST00000465591 LOC107984156A0A0G2JMH3 177 aa12.67□□□□□ -0.38
LIME1-203ENST00000465591 KRTAP4-16G5E9R7 235 aaPredicted RBP12.67□□□□□ -0.38
LIME1-203ENST00000465591 JOSD1Q15040 202 aaPredicted RBP12.67□□□□□ -0.38
LIME1-203ENST00000465591 SCGB1D4Q6XE38 83 aa12.67□□□□□ -0.38
LIME1-203ENST00000465591 ARL17AQ8IVW1 177 aa12.67□□□□□ -0.38
LIME1-203ENST00000465591 C3orf22Q8N5N4 141 aa12.66□□□□□ -0.38
LIME1-203ENST00000465591 PCP2Q8IVA1 136 aa12.65□□□□□ -0.38
LIME1-203ENST00000465591 LINC00337Q8N6G1 96 aa12.65□□□□□ -0.38
LIME1-203ENST00000465591 LINC00304Q8N9R0 145 aa12.65□□□□□ -0.38
LIME1-203ENST00000465591 SPRR4Q96PI1 79 aa12.65□□□□□ -0.38
LIME1-203ENST00000465591 ADAMTSL4-AS1Q5T5F5 129 aa12.63□□□□□ -0.39
LIME1-203ENST00000465591 EIF4EBP3O60516 100 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms