RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 NMUP48645 174 aa8.97□□□□□ -0.97
SQSTM1-205ENST00000464493 UBE2BP63146 152 aa8.97□□□□□ -0.97
SQSTM1-205ENST00000464493 LBHQ53QV2 105 aaPredicted RBP8.97□□□□□ -0.97
SQSTM1-205ENST00000464493 MEIG1Q5JSS6 88 aa8.97□□□□□ -0.97
SQSTM1-205ENST00000464493 TP73-AS1Q9UF72 201 aa8.97□□□□□ -0.97
SQSTM1-205ENST00000464493 C20orf202A1L168 122 aa8.96□□□□□ -0.98
SQSTM1-205ENST00000464493 C1orf137Q5JT78 98 aa8.96□□□□□ -0.98
SQSTM1-205ENST00000464493 MRPL55Q7Z7F7 128 aaKnown RBP8.96□□□□□ -0.98
SQSTM1-205ENST00000464493 KRTAP11-1Q8IUC1 163 aa8.96□□□□□ -0.98
SQSTM1-205ENST00000464493 PKHD1L1Q86WI1 4243 aa8.95□□□□□ -0.98
SQSTM1-205ENST00000464493 HIST1H2BLQ99880 126 aa8.95□□□□□ -0.98
SQSTM1-205ENST00000464493 IGLV5-37A0A075B6J1 123 aa8.94□□□□□ -0.98
SQSTM1-205ENST00000464493 SNRPEP62304 92 aaKnown RBP8.94□□□□□ -0.98
SQSTM1-205ENST00000464493 NKAPP1Q8N9T2 125 aa8.94□□□□□ -0.98
SQSTM1-205ENST00000464493 RPL24P83731 157 aaKnown RBP8.93□□□□□ -0.98
SQSTM1-205ENST00000464493 LINC00167Q96N53 147 aa8.93□□□□□ -0.98
SQSTM1-205ENST00000464493 VPREB1P12018 145 aa8.92□□□□□ -0.98
SQSTM1-205ENST00000464493 AKR1D1P51857 326 aa8.92□□□□□ -0.98
SQSTM1-205ENST00000464493 SRSF9Q13242 221 aaKnown RBP eCLIP8.92□□□□□ -0.98
SQSTM1-205ENST00000464493 SPINK6Q6UWN8 80 aa8.92□□□□□ -0.98
SQSTM1-205ENST00000464493 MIR7-3HGQ8N6C7 128 aa8.92□□□□□ -0.98
SQSTM1-205ENST00000464493 LRP1Q07954 4544 aaKnown RBP8.92□□□□□ -0.98
SQSTM1-205ENST00000464493 GAGE10A6NGK3 116 aa8.91□□□□□ -0.98
SQSTM1-205ENST00000464493 KRTAP29-1A8MX34 341 aaPredicted RBP8.91□□□□□ -0.98
SQSTM1-205ENST00000464493 C5orf52A6NGY3 159 aa8.9□□□□□ -0.98
SQSTM1-205ENST00000464493 RPL37AP8A6NKH3 93 aa8.9□□□□□ -0.98
SQSTM1-205ENST00000464493 IGLV7-43P04211 117 aa8.9□□□□□ -0.98
SQSTM1-205ENST00000464493 ATOH7Q8N100 152 aa8.9□□□□□ -0.98
SQSTM1-205ENST00000464493 IGKV2D-26A0A0A0MRZ7 120 aa8.89□□□□□ -0.99
SQSTM1-205ENST00000464493 A0A0J9YXY3 114 aa8.89□□□□□ -0.99
SQSTM1-205ENST00000464493 OXTP01178 125 aa8.89□□□□□ -0.99
SQSTM1-205ENST00000464493 Q8NDZ9 215 aa8.89□□□□□ -0.99
SQSTM1-205ENST00000464493 FAT3Q8TDW7 4589 aa8.88□□□□□ -0.99
SQSTM1-205ENST00000464493 BOD1L2Q8IYS8 172 aa8.88□□□□□ -0.99
SQSTM1-205ENST00000464493 DAND5Q8N907 189 aa8.88□□□□□ -0.99
SQSTM1-205ENST00000464493 DMBT1Q9UGM3 2413 aaPredicted RBP8.88□□□□□ -0.99
SQSTM1-205ENST00000464493 J3QL48 77 aa8.87□□□□□ -0.99
SQSTM1-205ENST00000464493 LOC107984156A0A0G2JMH3 177 aa8.86□□□□□ -0.99
SQSTM1-205ENST00000464493 ZNF815PA8K554 130 aa8.86□□□□□ -0.99
SQSTM1-205ENST00000464493 ANKRD39Q53RE8 183 aa8.86□□□□□ -0.99
SQSTM1-205ENST00000464493 ARL17AQ8IVW1 177 aa8.86□□□□□ -0.99
SQSTM1-205ENST00000464493 IGLV1-50A0A075B6I6 118 aa8.85□□□□□ -0.99
SQSTM1-205ENST00000464493 IGKV2-28A0A075B6P5 120 aa8.85□□□□□ -0.99
SQSTM1-205ENST00000464493 IGKV2D-28P01615 120 aa8.85□□□□□ -0.99
SQSTM1-205ENST00000464493 ADAMTSL4-AS1Q5T5F5 129 aa8.85□□□□□ -0.99
SQSTM1-205ENST00000464493 REG3GQ6UW15 175 aa8.85□□□□□ -0.99
SQSTM1-205ENST00000464493 TTTY13Q9BZ97 58 aa8.85□□□□□ -0.99
SQSTM1-205ENST00000464493 M0R378 163 aa8.84□□□□□ -0.99
SQSTM1-205ENST00000464493 BCE1O60756 84 aa8.84□□□□□ -0.99
SQSTM1-205ENST00000464493 DIRC1Q969H9 104 aa8.84□□□□□ -0.99
SQSTM1-205ENST00000464493 MIEN1Q9BRT3 115 aa8.84□□□□□ -0.99
SQSTM1-205ENST00000464493 ZNF861PO60384 105 aa8.83□□□□□ -1
SQSTM1-205ENST00000464493 TIMM17BO60830 172 aa8.83□□□□□ -1
SQSTM1-205ENST00000464493 NCR3O14931 201 aa8.82□□□□□ -1
SQSTM1-205ENST00000464493 SCGB1D1O95968 90 aa8.82□□□□□ -1
SQSTM1-205ENST00000464493 HSBP1L1C9JCN9 74 aa8.81□□□□□ -1
SQSTM1-205ENST00000464493 NPC2P61916 151 aa8.81□□□□□ -1
SQSTM1-205ENST00000464493 LITAFQ99732 161 aa8.81□□□□□ -1
SQSTM1-205ENST00000464493 TMEM238C9JI98 176 aa8.8□□□□□ -1
SQSTM1-205ENST00000464493 H0Y9J4 135 aa8.8□□□□□ -1
SQSTM1-205ENST00000464493 RPL28P46779 137 aaKnown RBP8.8□□□□□ -1
SQSTM1-205ENST00000464493 SOSTDC1Q6X4U4 206 aa8.8□□□□□ -1
SQSTM1-205ENST00000464493 SCGB1D4Q6XE38 83 aa8.8□□□□□ -1
SQSTM1-205ENST00000464493 PCP2Q8IVA1 136 aa8.8□□□□□ -1
SQSTM1-205ENST00000464493 LINC01600Q96MT4 127 aa8.8□□□□□ -1
SQSTM1-205ENST00000464493 EIF4EBP3O60516 100 aaPredicted RBP8.79□□□□□ -1
SQSTM1-205ENST00000464493 NDUFC2O95298 119 aa8.79□□□□□ -1
SQSTM1-205ENST00000464493 TMEM126AQ9H061 195 aa8.79□□□□□ -1
SQSTM1-205ENST00000464493 TRBV10-2A0A0K0K1G8 114 aa8.78□□□□□ -1
SQSTM1-205ENST00000464493 LINC00308Q8TCZ7 52 aa8.78□□□□□ -1
SQSTM1-205ENST00000464493 UBE2AP49459 152 aa8.77□□□□□ -1.01
SQSTM1-205ENST00000464493 SPANXB1Q9NS25 103 aaPredicted RBP8.77□□□□□ -1.01
SQSTM1-205ENST00000464493 TRBV10-3A0A0K0K1G6 114 aa8.76□□□□□ -1.01
SQSTM1-205ENST00000464493 MT1HL1P0DM35 61 aa8.76□□□□□ -1.01
SQSTM1-205ENST00000464493 FAM19A1Q7Z5A9 133 aa8.76□□□□□ -1.01
SQSTM1-205ENST00000464493 KRTAP13-1Q8IUC0 172 aa8.76□□□□□ -1.01
SQSTM1-205ENST00000464493 KCNQ1DNQ9H478 68 aa8.76□□□□□ -1.01
SQSTM1-205ENST00000464493 HERC1Q15751 4861 aa8.75□□□□□ -1.01
SQSTM1-205ENST00000464493 PRYO14603 147 aa8.75□□□□□ -1.01
SQSTM1-205ENST00000464493 DDTP30046 118 aa8.75□□□□□ -1.01
SQSTM1-205ENST00000464493 S100A12P80511 92 aa8.75□□□□□ -1.01
SQSTM1-205ENST00000464493 SPANXDQ9BXN6 97 aa8.75□□□□□ -1.01
SQSTM1-205ENST00000464493 SPANXCQ9NY87 97 aa8.75□□□□□ -1.01
SQSTM1-205ENST00000464493 S100A7L2Q5SY68 101 aa8.74□□□□□ -1.01
SQSTM1-205ENST00000464493 TMA7Q9Y2S6 64 aaKnown RBP8.74□□□□□ -1.01
SQSTM1-205ENST00000464493 PRLHP81277 87 aa8.73□□□□□ -1.01
SQSTM1-205ENST00000464493 Q6ZVH6 145 aa8.73□□□□□ -1.01
SQSTM1-205ENST00000464493 COPS9Q8WXC6 57 aa8.73□□□□□ -1.01
SQSTM1-205ENST00000464493 TNXBP22105 4242 aa8.73□□□□□ -1.01
SQSTM1-205ENST00000464493 IGLV6-57P01721 117 aa8.72□□□□□ -1.01
SQSTM1-205ENST00000464493 IFITM1P13164 125 aa8.72□□□□□ -1.01
SQSTM1-205ENST00000464493 SPRR1AP35321 89 aa8.72□□□□□ -1.01
SQSTM1-205ENST00000464493 KRTAP10-8P60410 259 aa8.72□□□□□ -1.01
SQSTM1-205ENST00000464493 KRTAP1-4P0C5Y4 121 aa8.71□□□□□ -1.02
SQSTM1-205ENST00000464493 JOSD1Q15040 202 aaPredicted RBP8.71□□□□□ -1.02
SQSTM1-205ENST00000464493 LINC00337Q8N6G1 96 aa8.71□□□□□ -1.02
SQSTM1-205ENST00000464493 ETDCA0A1B0GVM5 59 aa8.69□□□□□ -1.02
SQSTM1-205ENST00000464493 KRTAP4-16G5E9R7 235 aaPredicted RBP8.69□□□□□ -1.02
SQSTM1-205ENST00000464493 MUSTN1Q8IVN3 82 aa8.69□□□□□ -1.02
SQSTM1-205ENST00000464493 LINC00518Q8N0U6 118 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 198.5 ms