RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 ODF3L2Q3SX64 289 aa4.4□□□□□ -1.7
VPS13D-202ENST00000460333 C3orf84H3BNL1 204 aa4.4□□□□□ -1.71
VPS13D-202ENST00000460333 DEFB131BA0A096LNP1 70 aa4.4□□□□□ -1.71
VPS13D-202ENST00000460333 LINC00575Q6W349 94 aa4.4□□□□□ -1.71
VPS13D-202ENST00000460333 KLK12Q9UKR0 248 aa4.4□□□□□ -1.71
VPS13D-202ENST00000460333 ADGRG4Q8IZF6 3080 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 hDV103S1A0JD37 113 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 NUPR2A6NF83 97 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 H0Y9J4 135 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 LINC00315P59091 139 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 KRTAP1-1Q07627 177 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 BEAN1Q3B7T3 259 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 KRTAP24-1Q3LI83 254 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 LINC00337Q8N6G1 96 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 CASC2Q6XLA1 102 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 C1orf158Q8N1D5 194 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 SMCR5Q8TEV8 140 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 LOC110117498A0A087WWA1 95 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 A0A1B0GW54 56 aa4.39□□□□□ -1.71
VPS13D-202ENST00000460333 PSPHP1O15172 72 aa4.38□□□□□ -1.71
VPS13D-202ENST00000460333 FHL2Q14192 279 aa4.38□□□□□ -1.71
VPS13D-202ENST00000460333 MGAM2Q2M2H8 2515 aa4.38□□□□□ -1.71
VPS13D-202ENST00000460333 A8MTW9 85 aa4.38□□□□□ -1.71
VPS13D-202ENST00000460333 DEFB4AO15263 64 aa4.38□□□□□ -1.71
VPS13D-202ENST00000460333 C14orf177Q52M58 125 aa4.38□□□□□ -1.71
VPS13D-202ENST00000460333 IGKV4-1P06312 121 aa4.38□□□□□ -1.71
VPS13D-202ENST00000460333 WFDC10BQ8IUB3 73 aa4.38□□□□□ -1.71
VPS13D-202ENST00000460333 LITAFQ99732 161 aa4.38□□□□□ -1.71
VPS13D-202ENST00000460333 CELA1Q9UNI1 258 aa4.38□□□□□ -1.71
VPS13D-202ENST00000460333 BAHCC1Q9P281 2608 aa4.37□□□□□ -1.71
VPS13D-202ENST00000460333 LINC00482Q8N8I6 264 aa4.37□□□□□ -1.71
VPS13D-202ENST00000460333 PRR4Q16378 134 aa4.36□□□□□ -1.71
VPS13D-202ENST00000460333 Q8N9L7 120 aa4.36□□□□□ -1.71
VPS13D-202ENST00000460333 KLKP1Q107X0 134 aa4.36□□□□□ -1.71
VPS13D-202ENST00000460333 FAM218AQ96MZ4 157 aa4.36□□□□□ -1.71
VPS13D-202ENST00000460333 CD164Q04900 197 aa4.36□□□□□ -1.71
VPS13D-202ENST00000460333 B9D2Q9BPU9 175 aa4.36□□□□□ -1.71
VPS13D-202ENST00000460333 ITPR1Q14643 2758 aa4.36□□□□□ -1.71
VPS13D-202ENST00000460333 CFAP47Q6ZTR5 3102 aa4.36□□□□□ -1.71
VPS13D-202ENST00000460333 LRCOL1A6NCL2 159 aa4.35□□□□□ -1.71
VPS13D-202ENST00000460333 WFDC13Q8IUB5 93 aa4.35□□□□□ -1.71
VPS13D-202ENST00000460333 AGRNO00468 2067 aa4.35□□□□□ -1.71
VPS13D-202ENST00000460333 IGHV4-30-4P0DP06 118 aa4.35□□□□□ -1.71
VPS13D-202ENST00000460333 Q6ZQT0 140 aa4.35□□□□□ -1.71
VPS13D-202ENST00000460333 LINC00208Q96KT6 92 aa4.35□□□□□ -1.71
VPS13D-202ENST00000460333 XAGE1AQ9HD64 81 aa4.35□□□□□ -1.71
VPS13D-202ENST00000460333 CFAP46Q8IYW2 2715 aa4.35□□□□□ -1.71
VPS13D-202ENST00000460333 NBEAQ8NFP9 2946 aa4.35□□□□□ -1.71
VPS13D-202ENST00000460333 C6orf223Q8N319 242 aa4.34□□□□□ -1.71
VPS13D-202ENST00000460333 H3BPC8 53 aa4.34□□□□□ -1.71
VPS13D-202ENST00000460333 LINC00336Q6ZUF6 198 aa4.34□□□□□ -1.71
VPS13D-202ENST00000460333 EGFEM1PQ0D2K5 195 aa4.34□□□□□ -1.71
VPS13D-202ENST00000460333 FLNCQ14315 2725 aa4.34□□□□□ -1.72
VPS13D-202ENST00000460333 HRNRQ86YZ3 2850 aaPredicted RBP4.34□□□□□ -1.72
VPS13D-202ENST00000460333 K7ERS5 55 aa4.34□□□□□ -1.72
VPS13D-202ENST00000460333 SYCNQ0VAF6 134 aa4.34□□□□□ -1.72
VPS13D-202ENST00000460333 LRBAP50851 2863 aa4.34□□□□□ -1.72
VPS13D-202ENST00000460333 ZFHX4Q86UP3 3567 aa4.33□□□□□ -1.72
VPS13D-202ENST00000460333 DCHS1Q96JQ0 3298 aa4.33□□□□□ -1.72
VPS13D-202ENST00000460333 A0A1B0GUV1 79 aa4.33□□□□□ -1.72
VPS13D-202ENST00000460333 C1orf137Q5JT78 98 aa4.33□□□□□ -1.72
VPS13D-202ENST00000460333 LELP1Q5T871 98 aa4.33□□□□□ -1.72
VPS13D-202ENST00000460333 HCG22E2RYF7 251 aa4.33□□□□□ -1.72
VPS13D-202ENST00000460333 C10orf25Q5T742 122 aa4.33□□□□□ -1.72
VPS13D-202ENST00000460333 C11orf72Q8NBR9 251 aa4.33□□□□□ -1.72
VPS13D-202ENST00000460333 KALRNO60229 2985 aa4.33□□□□□ -1.72
VPS13D-202ENST00000460333 C2orf48Q96LS8 159 aa4.33□□□□□ -1.72
VPS13D-202ENST00000460333 CYSRT1A8MQ03 144 aa4.32□□□□□ -1.72
VPS13D-202ENST00000460333 HIGD2AQ9BW72 106 aa4.32□□□□□ -1.72
VPS13D-202ENST00000460333 WWC2-AS2Q96NR7 200 aa4.32□□□□□ -1.72
VPS13D-202ENST00000460333 LOC100131303A0A0U1RQF7 123 aa4.32□□□□□ -1.72
VPS13D-202ENST00000460333 CYP4F30PQ9H0H9 118 aa4.32□□□□□ -1.72
VPS13D-202ENST00000460333 H0Y9P7 68 aa4.32□□□□□ -1.72
VPS13D-202ENST00000460333 ZNF575Q86XF7 245 aa4.32□□□□□ -1.72
VPS13D-202ENST00000460333 ATRQ13535 2644 aa4.31□□□□□ -1.72
VPS13D-202ENST00000460333 Q6ZSN1 163 aa4.31□□□□□ -1.72
VPS13D-202ENST00000460333 UBR5O95071 2799 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-202ENST00000460333 IGLV4-60A0A075B6I1 120 aa4.31□□□□□ -1.72
VPS13D-202ENST00000460333 H7BZZ5 65 aa4.31□□□□□ -1.72
VPS13D-202ENST00000460333 VPREB1P12018 145 aa4.31□□□□□ -1.72
VPS13D-202ENST00000460333 FLNAP21333 2647 aaKnown RBP4.31□□□□□ -1.72
VPS13D-202ENST00000460333 PRM2P04554 102 aa4.31□□□□□ -1.72
VPS13D-202ENST00000460333 CENPEQ02224 2701 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 IGHV3OR16-9A0A0B4J2B5 98 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 A0A0J9YWU9 116 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 M0R2N4 97 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 PRR3P79522 188 aaKnown RBP4.3□□□□□ -1.72
VPS13D-202ENST00000460333 UNQ6190/PRO20217Q6UXQ8 127 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 SMIM29Q86T20 159 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 ZZEF1O43149 2961 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 NANOS2P60321 138 aaKnown RBP4.3□□□□□ -1.72
VPS13D-202ENST00000460333 TM2D3Q9BRN9 247 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 ASPMQ8IZT6 3477 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 LAMA5O15230 3695 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 ITPR3Q14573 2671 aa4.3□□□□□ -1.72
VPS13D-202ENST00000460333 KPRPQ5T749 579 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-202ENST00000460333 C4orf48Q5BLP8 95 aa4.28□□□□□ -1.72
VPS13D-202ENST00000460333 PRR15Q8IV56 129 aa4.28□□□□□ -1.72
VPS13D-202ENST00000460333 IGKV2-28A0A075B6P5 120 aa4.28□□□□□ -1.72
VPS13D-202ENST00000460333 IGKV2D-28P01615 120 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms