RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 IAPPP10997 89 aa3.21□□□□□ -1.89
CCDC88A-209ENST00000456975 ENHOQ6UWT2 76 aa3.21□□□□□ -1.89
CCDC88A-209ENST00000456975 Q8NBF4 154 aa3.21□□□□□ -1.89
CCDC88A-209ENST00000456975 PLCE1Q9P212 2302 aa3.21□□□□□ -1.89
CCDC88A-209ENST00000456975 R4GMQ9 66 aa3.21□□□□□ -1.89
CCDC88A-209ENST00000456975 MEGF8Q7Z7M0 2845 aa3.21□□□□□ -1.9
CCDC88A-209ENST00000456975 IGHV3-43A0A0B4J1X8 118 aa3.21□□□□□ -1.9
CCDC88A-209ENST00000456975 IGHV3-35A0A0C4DH35 117 aa3.21□□□□□ -1.9
CCDC88A-209ENST00000456975 H3BSH0 61 aa3.21□□□□□ -1.9
CCDC88A-209ENST00000456975 FXYD4P59646 89 aa3.21□□□□□ -1.9
CCDC88A-209ENST00000456975 CASC2Q6XLA1 102 aa3.21□□□□□ -1.9
CCDC88A-209ENST00000456975 OBSCN-AS1Q96MR7 158 aa3.21□□□□□ -1.9
CCDC88A-209ENST00000456975 TRBV6-6A0A0A6YYG2 114 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 TRAV10A0A0B4J240 114 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 A0A1B0GUV1 79 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 COX7A1P24310 79 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 Q8NDZ9 215 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 C8orf17Q9NRJ1 99 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 LYNX1G3V0Z9 82 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 IGKV2-30P06310 120 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 IGHV3-30-3P0DP02 117 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 LYNX1P0DP58 116 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 EIF4EBP1Q13541 118 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 Q8N9P0 234 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 KLHL30-AS1Q8NEE0 82 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 UBALD1Q8TB05 177 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 C1orf147Q96MC9 270 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 SVEP1Q4LDE5 3571 aa3.2□□□□□ -1.9
CCDC88A-209ENST00000456975 IGHV3-74A0A0B4J1X5 117 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 IGIPA6NJ69 53 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 M0R1W7 72 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 LCE4AQ5TA78 99 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 C14orf178Q8N769 122 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 CSNK1G2-AS1Q8NCQ2 148 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 WFDC9Q8NEX5 89 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 MGAM2Q2M2H8 2515 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 KRTAP9-7A8MTY7 169 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 IGHV1-69P01742 117 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 LYZL1Q6UWQ5 148 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 KRTAP19-1Q8IUB9 90 aa3.19□□□□□ -1.9
CCDC88A-209ENST00000456975 KRTAP4-16G5E9R7 235 aaPredicted RBP3.18□□□□□ -1.9
CCDC88A-209ENST00000456975 MIAQ16674 131 aa3.18□□□□□ -1.9
CCDC88A-209ENST00000456975 PRR15LQ9BU68 103 aa3.18□□□□□ -1.9
CCDC88A-209ENST00000456975 IGHV3-11P01762 117 aa3.17□□□□□ -1.9
CCDC88A-209ENST00000456975 LUZP6Q538Z0 58 aa3.17□□□□□ -1.9
CCDC88A-209ENST00000456975 LYPD1Q8N2G4 141 aa3.17□□□□□ -1.9
CCDC88A-209ENST00000456975 PKD1L1Q8TDX9 2849 aa3.17□□□□□ -1.9
CCDC88A-209ENST00000456975 SRRM5B3KS81 715 aa3.17□□□□□ -1.9
CCDC88A-209ENST00000456975 SOCS3O14543 225 aa3.17□□□□□ -1.9
CCDC88A-209ENST00000456975 NREPQ16612 68 aa3.17□□□□□ -1.9
CCDC88A-209ENST00000456975 ZNF833PQ6ZTB9 187 aa3.17□□□□□ -1.9
CCDC88A-209ENST00000456975 AMELXQ99217 191 aa3.17□□□□□ -1.9
CCDC88A-209ENST00000456975 NDUFA4L2Q9NRX3 87 aa3.17□□□□□ -1.9
CCDC88A-209ENST00000456975 TRAV12-3A0A0B4J271 114 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 IGHV3-64DA0A0J9YX35 117 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 IGLV2-23P01705 113 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 SAA2P0DJI9 122 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 LINC00322Q6ZN03 302 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 KAAG1Q9UBP8 84 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 A8MWP4 228 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 M0R3E3 92 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 RTL8CO15255 209 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 MIR22HGQ0VDD5 57 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 LYPD2Q6UXB3 125 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 Q6ZQT0 140 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 Q8NAQ8 132 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 UBL5Q9BZL1 73 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 C14orf132Q9NPU4 83 aa3.16□□□□□ -1.9
CCDC88A-209ENST00000456975 CLPSL1A2RUU4 121 aa3.15□□□□□ -1.9
CCDC88A-209ENST00000456975 MSMBP08118 114 aa3.15□□□□□ -1.9
CCDC88A-209ENST00000456975 P0C880 135 aa3.15□□□□□ -1.9
CCDC88A-209ENST00000456975 HIGD2BQ4VC39 106 aa3.15□□□□□ -1.9
CCDC88A-209ENST00000456975 RNASE13Q5GAN3 156 aaKnown RBP3.15□□□□□ -1.9
CCDC88A-209ENST00000456975 HCP5Q6MZN7 132 aa3.15□□□□□ -1.9
CCDC88A-209ENST00000456975 LITAFQ99732 161 aa3.15□□□□□ -1.9
CCDC88A-209ENST00000456975 KRTAP4-5Q9BYR2 181 aa3.15□□□□□ -1.9
CCDC88A-209ENST00000456975 ARHGAP32A7KAX9 2087 aa3.15□□□□□ -1.9
CCDC88A-209ENST00000456975 IGHV3-21A0A0B4J1V1 117 aa3.15□□□□□ -1.91
CCDC88A-209ENST00000456975 A0A0J9YX75 114 aa3.15□□□□□ -1.91
CCDC88A-209ENST00000456975 CSAG1Q6PB30 78 aa3.15□□□□□ -1.91
CCDC88A-209ENST00000456975 DEFB108BQ8NET1 73 aa3.15□□□□□ -1.91
CCDC88A-209ENST00000456975 GAFA1Q96PS6 74 aa3.15□□□□□ -1.91
CCDC88A-209ENST00000456975 CAMK2N2Q96S95 79 aa3.15□□□□□ -1.91
CCDC88A-209ENST00000456975 PRKDCP78527 4128 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-209ENST00000456975 TENM1Q9UKZ4 2725 aa3.15□□□□□ -1.91
CCDC88A-209ENST00000456975 NOTCH1P46531 2555 aa3.14□□□□□ -1.91
CCDC88A-209ENST00000456975 A0A0J9YXY3 114 aa3.14□□□□□ -1.91
CCDC88A-209ENST00000456975 LINC00467Q9BRT7 94 aa3.14□□□□□ -1.91
CCDC88A-209ENST00000456975 TMEM14CQ9P0S9 112 aa3.14□□□□□ -1.91
CCDC88A-209ENST00000456975 IGLV7-46A0A075B6I9 117 aa3.13□□□□□ -1.91
CCDC88A-209ENST00000456975 IGLV2-18A0A075B6J9 118 aa3.13□□□□□ -1.91
CCDC88A-209ENST00000456975 IGLV1-47P01700 117 aa3.13□□□□□ -1.91
CCDC88A-209ENST00000456975 PRR4Q16378 134 aa3.13□□□□□ -1.91
CCDC88A-209ENST00000456975 Q6ZR54 194 aa3.13□□□□□ -1.91
CCDC88A-209ENST00000456975 RYR3Q15413 4870 aa3.13□□□□□ -1.91
CCDC88A-209ENST00000456975 IGHV3OR16-8A0A075B7F1 116 aa3.13□□□□□ -1.91
CCDC88A-209ENST00000456975 TRBV6-5A0A0K0K1A5 114 aa3.13□□□□□ -1.91
CCDC88A-209ENST00000456975 LECT2O14960 151 aa3.13□□□□□ -1.91
CCDC88A-209ENST00000456975 CTSGP08311 255 aa3.13□□□□□ -1.91
CCDC88A-209ENST00000456975 CASC10Q5T4H9 136 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms