RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, human

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDC42BPA-208	ENST00000442054	SMCR5	Q8TEV8	140 aa		5	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	OBSCN-AS1	Q96MR7	158 aa		5	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	TRBV7-7	A0A0K0K1E9	115 aa		4.99	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	SCGB1C2	P0DMR2	95 aa		4.99	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	CAMK2N2	Q96S95	79 aa		4.99	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	FAM229A	H3BQW9	127 aa		4.99	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	HERVK_113	P63121	156 aa		4.99	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	PKIG	Q9Y2B9	76 aa		4.99	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	GAGE2B	Q13066	116 aa		4.98	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	LYST	Q99698	3801 aa		4.98	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	TRAV8-4	A0A0B4J246	113 aa		4.98	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	COX7A2L	O14548	114 aa		4.98	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	DNAH10OS	P0CZ25	163 aa		4.97	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	NDUFV3	P56181	108 aa	Known RBP	4.97	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	IGHV3OR16-9	A0A0B4J2B5	98 aa		4.97	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	RPL18A	Q02543	176 aa	Known RBP	4.96	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	4.96	□□□□□ -1.61
CDC42BPA-208	ENST00000442054	IBA57-AS1	B1ANH7	110 aa		4.96	□□□□□ -1.62
CDC42BPA-208	ENST00000442054		H7C2G1	150 aa		4.96	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	LINC00337	Q8N6G1	96 aa		4.96	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	USP17L23	D6RBM5	183 aa		4.96	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	FUS	P35637	526 aa	Known RBP eCLIP	4.96	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	RPL28	P46779	137 aa	Known RBP	4.96	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	NPC2	P61916	151 aa		4.96	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	UBE2B	P63146	152 aa		4.96	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	C9orf129	Q5T035	196 aa	Known RBP	4.96	□□□□□ -1.62
CDC42BPA-208	ENST00000442054		A0A0U1RRA0	63 aa		4.95	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	TRAC	P01848	142 aa		4.95	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	C7orf33	Q8WU49	177 aa		4.95	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	C2orf82	Q6UX34	121 aa		4.95	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	UPK3B	Q9BT76	320 aa		4.95	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	IGLV4-60	A0A075B6I1	120 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	HIST1H4A	P62805	103 aa	Known RBP	4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	MEIG1	Q5JSS6	88 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	LINC00167	Q96N53	147 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054		A0A087WTM6	91 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	LRCOL1	A6NCL2	159 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	GHRH	P01286	108 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	SMR3B	P02814	79 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	RTL8C	O15255	209 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	SPAG11B	Q08648	103 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	GAGE2E	Q4V326	116 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054		Q8N3U1	123 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	GAGE2D	Q9UEU5	116 aa		4.94	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	CCDC179	H3BU77	68 aa		4.93	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	SEC61G	P60059	68 aa		4.93	□□□□□ -1.62
CDC42BPA-208	ENST00000442054		A0A087WZ39	114 aa		4.93	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	HAMP	P81172	84 aa		4.93	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	LINC00526	Q96FQ7	95 aa		4.93	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	SMIM20	Q8N5G0	67 aa		4.92	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	SYCN	Q0VAF6	134 aa		4.91	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	EPM2A	B3EWF7	344 aa		4.91	□□□□□ -1.62
CDC42BPA-208	ENST00000442054		Q8NDZ9	215 aa		4.91	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	DYNC2H1	Q8NCM8	4307 aa	Known RBP	4.91	□□□□□ -1.62
CDC42BPA-208	ENST00000442054		A0A087WYN8	130 aa		4.91	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	KIAA0087	Q14695	138 aa		4.91	□□□□□ -1.62
CDC42BPA-208	ENST00000442054		Q1RN00	199 aa		4.91	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	IMUP	Q9GZP8	106 aa		4.91	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	COX7B2	Q8TF08	81 aa		4.9	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	ANAPC13	Q9BS18	74 aa		4.9	□□□□□ -1.62
CDC42BPA-208	ENST00000442054	LINC01561	Q8N1V8	128 aa		4.9	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	SMIM11B	Q8TCY0	68 aa		4.9	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	C2orf48	Q96LS8	159 aa		4.9	□□□□□ -1.63
CDC42BPA-208	ENST00000442054		A0A1B0GUV1	79 aa		4.89	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	ACYP1	P07311	99 aa		4.89	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	COX6C	P09669	75 aa		4.89	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	CSMD3	Q7Z407	3707 aa		4.89	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	LINC00158	P58513	81 aa		4.89	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	LINC00959	A0A1B0GUT2	108 aa		4.89	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	SNCG	O76070	127 aa		4.89	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	CIRBP	Q14011	172 aa	Known RBP	4.89	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	CD164L2	Q6UWJ8	174 aa		4.89	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	MIR7-3HG	Q8N6C7	128 aa		4.89	□□□□□ -1.63
CDC42BPA-208	ENST00000442054		B5MCH6	92 aa		4.88	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	PLA2G1B	P04054	148 aa	Known RBP	4.88	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	PFN2	P35080	140 aa		4.88	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	NKAPP1	Q8N9T2	125 aa		4.88	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	RPS28	P62857	69 aa	Known RBP	4.88	□□□□□ -1.63
CDC42BPA-208	ENST00000442054		Q6ZR54	194 aa		4.88	□□□□□ -1.63
CDC42BPA-208	ENST00000442054		A0A1B0GX51	115 aa		4.88	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	TRAV13-2	A0A0B4J235	113 aa		4.87	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	BAALC-AS2	P0C853	105 aa		4.87	□□□□□ -1.63
CDC42BPA-208	ENST00000442054		Q8N814	137 aa		4.87	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	COPS9	Q8WXC6	57 aa		4.87	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	KRTAP1-5	Q9BYS1	174 aa		4.87	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	CXCL5	P42830	114 aa		4.87	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	LINC00643	Q86TS7	51 aa		4.86	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	TMEM126A	Q9H061	195 aa		4.86	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	LINC00474	Q9P2X8	69 aa		4.86	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	ENHO	Q6UWT2	76 aa		4.86	□□□□□ -1.63
CDC42BPA-208	ENST00000442054		Q8IZM0	81 aa		4.86	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	SND1-IT1	Q9HBX3	110 aa		4.86	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	DNAH9	Q9NYC9	4486 aa		4.86	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	LOC107984640	A0A0U1RRK4	108 aa		4.85	□□□□□ -1.63
CDC42BPA-208	ENST00000442054		Q5XG85	94 aa		4.85	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	DNAH10	Q8IVF4	4471 aa		4.85	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	HUWE1	Q7Z6Z7	4374 aa	Known RBP	4.85	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	OR13C6P	Q8NH95	151 aa		4.84	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	4.84	□□□□□ -1.63
CDC42BPA-208	ENST00000442054	DNAH7	Q8WXX0	4024 aa		4.83	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms