RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 NDUFA1O15239 70 aa2.06□□□□□ -2.08
SF3B1-203ENST00000414174 LY6EQ16553 131 aa2.06□□□□□ -2.08
SF3B1-203ENST00000414174 C14orf177Q52M58 125 aa2.06□□□□□ -2.08
SF3B1-203ENST00000414174 LINC00612Q8N6U2 182 aa2.06□□□□□ -2.08
SF3B1-203ENST00000414174 CCL26Q9Y258 94 aa2.06□□□□□ -2.08
SF3B1-203ENST00000414174 DEFB131BA0A096LNP1 70 aa2.05□□□□□ -2.08
SF3B1-203ENST00000414174 A0A0G2JQZ4 141 aa2.05□□□□□ -2.08
SF3B1-203ENST00000414174 TPRXLQ17RH7 258 aa2.05□□□□□ -2.08
SF3B1-203ENST00000414174 TNRC6CQ9HCJ0 1690 aaKnown RBP2.05□□□□□ -2.08
SF3B1-203ENST00000414174 SPAG17Q6Q759 2223 aa2.05□□□□□ -2.08
SF3B1-203ENST00000414174 EP400Q96L91 3159 aa2.04□□□□□ -2.08
SF3B1-203ENST00000414174 MRPL33O75394 65 aaKnown RBP2.04□□□□□ -2.08
SF3B1-203ENST00000414174 CRIP1P50238 77 aa2.04□□□□□ -2.08
SF3B1-203ENST00000414174 FREM1Q5H8C1 2179 aa2.04□□□□□ -2.08
SF3B1-203ENST00000414174 LINC00304Q8N9R0 145 aa2.04□□□□□ -2.08
SF3B1-203ENST00000414174 CACNA1DQ01668 2161 aa2.03□□□□□ -2.08
SF3B1-203ENST00000414174 IGLV6-57P01721 117 aa2.03□□□□□ -2.08
SF3B1-203ENST00000414174 LINC00158P58513 81 aa2.03□□□□□ -2.08
SF3B1-203ENST00000414174 LINC00315P59091 139 aa2.03□□□□□ -2.08
SF3B1-203ENST00000414174 SMIM11BQ8TCY0 68 aa2.03□□□□□ -2.08
SF3B1-203ENST00000414174 SPACA4Q8TDM5 124 aa2.03□□□□□ -2.08
SF3B1-203ENST00000414174 ABCA4P78363 2273 aa2.03□□□□□ -2.08
SF3B1-203ENST00000414174 DOCK10Q96BY6 2186 aa2.03□□□□□ -2.08
SF3B1-203ENST00000414174 SDK1Q7Z5N4 2213 aa2.02□□□□□ -2.09
SF3B1-203ENST00000414174 CEP192Q8TEP8 1941 aa2.02□□□□□ -2.09
SF3B1-203ENST00000414174 HRES1P13985 223 aa2.02□□□□□ -2.09
SF3B1-203ENST00000414174 C10orf55Q5SWW7 151 aa2.02□□□□□ -2.09
SF3B1-203ENST00000414174 ADAMTS9Q9P2N4 1935 aa2.01□□□□□ -2.09
SF3B1-203ENST00000414174 COL27A1Q8IZC6 1860 aaPredicted RBP2.01□□□□□ -2.09
SF3B1-203ENST00000414174 KRTAP5-8O75690 187 aa2.01□□□□□ -2.09
SF3B1-203ENST00000414174 ACYP2P14621 99 aa2.01□□□□□ -2.09
SF3B1-203ENST00000414174 KRTAP13-3Q3SY46 172 aa2.01□□□□□ -2.09
SF3B1-203ENST00000414174 Q6ZQY7 126 aa2.01□□□□□ -2.09
SF3B1-203ENST00000414174 KRTAP11-1Q8IUC1 163 aa2.01□□□□□ -2.09
SF3B1-203ENST00000414174 ANAPC11Q9NYG5 84 aa2.01□□□□□ -2.09
SF3B1-203ENST00000414174 NUP214P35658 2090 aaPredicted RBP2.01□□□□□ -2.09
SF3B1-203ENST00000414174 TNCP24821 2201 aa2.01□□□□□ -2.09
SF3B1-203ENST00000414174 KMT2BQ9UMN6 2715 aaPredicted RBP2□□□□□ -2.09
SF3B1-203ENST00000414174 INE1O15225 51 aa2□□□□□ -2.09
SF3B1-203ENST00000414174 PRB2P02812 416 aaPredicted RBP2□□□□□ -2.09
SF3B1-203ENST00000414174 KRTAP10-8P60410 259 aa2□□□□□ -2.09
SF3B1-203ENST00000414174 Q8IZM0 81 aa2□□□□□ -2.09
SF3B1-203ENST00000414174 Q8N9L7 120 aa2□□□□□ -2.09
SF3B1-203ENST00000414174 CCL19Q99731 98 aa2□□□□□ -2.09
SF3B1-203ENST00000414174 IGKV2-28A0A075B6P5 120 aa1.99□□□□□ -2.09
SF3B1-203ENST00000414174 H3BSH0 61 aa1.99□□□□□ -2.09
SF3B1-203ENST00000414174 M0R2N4 97 aa1.99□□□□□ -2.09
SF3B1-203ENST00000414174 LY6G6CO95867 125 aa1.99□□□□□ -2.09
SF3B1-203ENST00000414174 IGKV2D-28P01615 120 aa1.99□□□□□ -2.09
SF3B1-203ENST00000414174 POLR2KP53803 58 aaKnown RBP1.99□□□□□ -2.09
SF3B1-203ENST00000414174 GOLGA4Q13439 2230 aaKnown RBP1.99□□□□□ -2.09
SF3B1-203ENST00000414174 COL4A4P53420 1690 aaPredicted RBP1.99□□□□□ -2.09
SF3B1-203ENST00000414174 IGKV2D-24A0A075B6R9 120 aa1.98□□□□□ -2.09
SF3B1-203ENST00000414174 MAPK1IP1LQ8NDC0 245 aa1.98□□□□□ -2.09
SF3B1-203ENST00000414174 UNC13CQ8NB66 2214 aa1.97□□□□□ -2.09
SF3B1-203ENST00000414174 H3BRN7 92 aa1.97□□□□□ -2.09
SF3B1-203ENST00000414174 PRB1P04280 392 aa1.97□□□□□ -2.09
SF3B1-203ENST00000414174 CDKN2A-AS1Q9UH64 79 aa1.97□□□□□ -2.09
SF3B1-203ENST00000414174 CEP350Q5VT06 3117 aa1.96□□□□□ -2.1
SF3B1-203ENST00000414174 G3V318 75 aa1.96□□□□□ -2.1
SF3B1-203ENST00000414174 ANGP03950 147 aaKnown RBP1.96□□□□□ -2.1
SF3B1-203ENST00000414174 DEFB134Q4QY38 66 aa1.96□□□□□ -2.1
SF3B1-203ENST00000414174 LINC00575Q6W349 94 aa1.96□□□□□ -2.1
SF3B1-203ENST00000414174 KRTAP5-5Q701N2 237 aaPredicted RBP1.96□□□□□ -2.1
SF3B1-203ENST00000414174 SSBP3-AS1Q7Z2R9 100 aa1.96□□□□□ -2.1
SF3B1-203ENST00000414174 COL4A2P08572 1712 aa1.96□□□□□ -2.1
SF3B1-203ENST00000414174 RP1P56715 2156 aa1.96□□□□□ -2.1
SF3B1-203ENST00000414174 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.95□□□□□ -2.1
SF3B1-203ENST00000414174 PRR14LQ5THK1 2151 aa1.95□□□□□ -2.1
SF3B1-203ENST00000414174 UTRNP46939 3433 aa1.94□□□□□ -2.1
SF3B1-203ENST00000414174 ALPK2Q86TB3 2170 aa1.94□□□□□ -2.1
SF3B1-203ENST00000414174 A0A096LNT2 108 aa1.94□□□□□ -2.1
SF3B1-203ENST00000414174 RPS27P42677 84 aaKnown RBP1.94□□□□□ -2.1
SF3B1-203ENST00000414174 Q6ZRX8 168 aa1.94□□□□□ -2.1
SF3B1-203ENST00000414174 PLAC4Q8WY50 150 aa1.94□□□□□ -2.1
SF3B1-203ENST00000414174 SPTY2D1-AS1A0A0U1RR47 76 aa1.93□□□□□ -2.1
SF3B1-203ENST00000414174 LYNX1G3V0Z9 82 aa1.93□□□□□ -2.1
SF3B1-203ENST00000414174 PRCDQ00LT1 54 aa1.93□□□□□ -2.1
SF3B1-203ENST00000414174 PRO3102Q9H379 93 aa1.93□□□□□ -2.1
SF3B1-203ENST00000414174 SEC16AO15027 2179 aa1.93□□□□□ -2.1
SF3B1-203ENST00000414174 GVQW2A0A096LPI5 108 aaPredicted RBP1.92□□□□□ -2.1
SF3B1-203ENST00000414174 CCL22O00626 93 aa1.92□□□□□ -2.1
SF3B1-203ENST00000414174 DSCR10P59022 87 aa1.92□□□□□ -2.1
SF3B1-203ENST00000414174 RPL39P62891 51 aaKnown RBP1.92□□□□□ -2.1
SF3B1-203ENST00000414174 PIGYQ3MUY2 71 aa1.92□□□□□ -2.1
SF3B1-203ENST00000414174 C10orf99Q6UWK7 81 aa1.92□□□□□ -2.1
SF3B1-203ENST00000414174 RPL39LQ96EH5 51 aaKnown RBP1.92□□□□□ -2.1
SF3B1-203ENST00000414174 SHANK1Q9Y566 2161 aa1.91□□□□□ -2.1
SF3B1-203ENST00000414174 PRB3Q04118 309 aaPredicted RBP1.91□□□□□ -2.1
SF3B1-203ENST00000414174 SPINK9Q5DT21 86 aa1.91□□□□□ -2.1
SF3B1-203ENST00000414174 LCE3EQ5T5B0 92 aa1.91□□□□□ -2.1
SF3B1-203ENST00000414174 LCE1CQ5T751 118 aa1.91□□□□□ -2.1
SF3B1-203ENST00000414174 LCE1BQ5T7P3 118 aa1.91□□□□□ -2.1
SF3B1-203ENST00000414174 TP53AIP1Q9HCN2 124 aa1.91□□□□□ -2.1
SF3B1-203ENST00000414174 I3L2K1 104 aa1.9□□□□□ -2.11
SF3B1-203ENST00000414174 ZNF318Q5VUA4 2279 aa1.9□□□□□ -2.11
SF3B1-203ENST00000414174 ZFHX2Q9C0A1 2572 aaPredicted RBP1.9□□□□□ -2.11
SF3B1-203ENST00000414174 PDE4DIPQ5VU43 2346 aa1.89□□□□□ -2.11
SF3B1-203ENST00000414174 Q6ZRN7 208 aaPredicted RBP1.89□□□□□ -2.11
SF3B1-203ENST00000414174 DEFB106AQ8N104 65 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms