RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 SMIM13P0DJ93 91 aa13.77□□□□□ -0.21
PTCD3-203ENST00000409783 LINC00158P58513 81 aa13.77□□□□□ -0.21
PTCD3-203ENST00000409783 A0A0U1RRA0 63 aa13.76□□□□□ -0.21
PTCD3-203ENST00000409783 NMUP48645 174 aa13.75□□□□□ -0.21
PTCD3-203ENST00000409783 SRSF9Q13242 221 aaKnown RBP eCLIP13.75□□□□□ -0.21
PTCD3-203ENST00000409783 Q8NDZ9 215 aa13.75□□□□□ -0.21
PTCD3-203ENST00000409783 S100A6P06703 90 aa13.74□□□□□ -0.21
PTCD3-203ENST00000409783 LGALS3P17931 250 aaKnown RBP13.74□□□□□ -0.21
PTCD3-203ENST00000409783 MEIG1Q5JSS6 88 aa13.74□□□□□ -0.21
PTCD3-203ENST00000409783 MRPL55Q7Z7F7 128 aaKnown RBP13.74□□□□□ -0.21
PTCD3-203ENST00000409783 VPREB1P12018 145 aa13.73□□□□□ -0.21
PTCD3-203ENST00000409783 UBE2BP63146 152 aa13.73□□□□□ -0.21
PTCD3-203ENST00000409783 LBHQ53QV2 105 aaPredicted RBP13.73□□□□□ -0.21
PTCD3-203ENST00000409783 C1orf137Q5JT78 98 aa13.73□□□□□ -0.21
PTCD3-203ENST00000409783 S100A2P29034 98 aa13.72□□□□□ -0.21
PTCD3-203ENST00000409783 SNRPEP62304 92 aaKnown RBP13.72□□□□□ -0.21
PTCD3-203ENST00000409783 LINC00167Q96N53 147 aa13.72□□□□□ -0.21
PTCD3-203ENST00000409783 KRTAP29-1A8MX34 341 aaPredicted RBP13.71□□□□□ -0.21
PTCD3-203ENST00000409783 LINC00587B1AMM8 73 aa13.71□□□□□ -0.21
PTCD3-203ENST00000409783 MIR7-3HGQ8N6C7 128 aa13.71□□□□□ -0.21
PTCD3-203ENST00000409783 IGKV2D-26A0A0A0MRZ7 120 aa13.7□□□□□ -0.22
PTCD3-203ENST00000409783 C20orf202A1L168 122 aa13.7□□□□□ -0.22
PTCD3-203ENST00000409783 C5orf52A6NGY3 159 aa13.7□□□□□ -0.22
PTCD3-203ENST00000409783 SPINK6Q6UWN8 80 aa13.69□□□□□ -0.22
PTCD3-203ENST00000409783 IGLV7-43P04211 117 aa13.68□□□□□ -0.22
PTCD3-203ENST00000409783 NKAPP1Q8N9T2 125 aa13.68□□□□□ -0.22
PTCD3-203ENST00000409783 A0A0J9YXY3 114 aa13.67□□□□□ -0.22
PTCD3-203ENST00000409783 GAGE10A6NGK3 116 aa13.67□□□□□ -0.22
PTCD3-203ENST00000409783 ATOH7Q8N100 152 aa13.67□□□□□ -0.22
PTCD3-203ENST00000409783 RPL37AP8A6NKH3 93 aa13.66□□□□□ -0.22
PTCD3-203ENST00000409783 OXTP01178 125 aa13.66□□□□□ -0.22
PTCD3-203ENST00000409783 RPL24P83731 157 aaKnown RBP13.66□□□□□ -0.22
PTCD3-203ENST00000409783 ANKRD39Q53RE8 183 aa13.65□□□□□ -0.22
PTCD3-203ENST00000409783 DAND5Q8N907 189 aa13.65□□□□□ -0.22
PTCD3-203ENST00000409783 TTTY13Q9BZ97 58 aa13.65□□□□□ -0.22
PTCD3-203ENST00000409783 LOC107984156A0A0G2JMH3 177 aa13.64□□□□□ -0.23
PTCD3-203ENST00000409783 ARL17AQ8IVW1 177 aa13.64□□□□□ -0.23
PTCD3-203ENST00000409783 DMBT1Q9UGM3 2413 aaPredicted RBP13.64□□□□□ -0.23
PTCD3-203ENST00000409783 AKR1D1P51857 326 aa13.63□□□□□ -0.23
PTCD3-203ENST00000409783 ADAMTSL4-AS1Q5T5F5 129 aa13.62□□□□□ -0.23
PTCD3-203ENST00000409783 BOD1L2Q8IYS8 172 aa13.62□□□□□ -0.23
PTCD3-203ENST00000409783 IGLV1-50A0A075B6I6 118 aa13.61□□□□□ -0.23
PTCD3-203ENST00000409783 LITAFQ99732 161 aa13.61□□□□□ -0.23
PTCD3-203ENST00000409783 IGKV2-28A0A075B6P5 120 aa13.59□□□□□ -0.23
PTCD3-203ENST00000409783 ZNF815PA8K554 130 aa13.59□□□□□ -0.23
PTCD3-203ENST00000409783 IGKV2D-28P01615 120 aa13.59□□□□□ -0.23
PTCD3-203ENST00000409783 J3QL48 77 aa13.57□□□□□ -0.24
PTCD3-203ENST00000409783 M0R378 163 aa13.57□□□□□ -0.24
PTCD3-203ENST00000409783 EIF4EBP3O60516 100 aaPredicted RBP13.57□□□□□ -0.24
PTCD3-203ENST00000409783 BCE1O60756 84 aa13.57□□□□□ -0.24
PTCD3-203ENST00000409783 SOSTDC1Q6X4U4 206 aa13.57□□□□□ -0.24
PTCD3-203ENST00000409783 TIMM17BO60830 172 aa13.56□□□□□ -0.24
PTCD3-203ENST00000409783 MT1HL1P0DM35 61 aa13.56□□□□□ -0.24
PTCD3-203ENST00000409783 HERC1Q15751 4861 aa13.56□□□□□ -0.24
PTCD3-203ENST00000409783 ZNF861PO60384 105 aa13.55□□□□□ -0.24
PTCD3-203ENST00000409783 H0Y9J4 135 aa13.54□□□□□ -0.24
PTCD3-203ENST00000409783 NCR3O14931 201 aa13.54□□□□□ -0.24
PTCD3-203ENST00000409783 REG3GQ6UW15 175 aa13.54□□□□□ -0.24
PTCD3-203ENST00000409783 PCP2Q8IVA1 136 aa13.54□□□□□ -0.24
PTCD3-203ENST00000409783 DIRC1Q969H9 104 aa13.54□□□□□ -0.24
PTCD3-203ENST00000409783 LINC01600Q96MT4 127 aa13.54□□□□□ -0.24
PTCD3-203ENST00000409783 TMEM238C9JI98 176 aa13.53□□□□□ -0.24
PTCD3-203ENST00000409783 KRTAP13-1Q8IUC0 172 aa13.52□□□□□ -0.25
PTCD3-203ENST00000409783 TMEM126AQ9H061 195 aa13.52□□□□□ -0.25
PTCD3-203ENST00000409783 TNXBP22105 4242 aa13.52□□□□□ -0.25
PTCD3-203ENST00000409783 NPC2P61916 151 aa13.51□□□□□ -0.25
PTCD3-203ENST00000409783 NDUFC2O95298 119 aa13.5□□□□□ -0.25
PTCD3-203ENST00000409783 LINC00308Q8TCZ7 52 aa13.5□□□□□ -0.25
PTCD3-203ENST00000409783 MIEN1Q9BRT3 115 aa13.5□□□□□ -0.25
PTCD3-203ENST00000409783 TRBV10-2A0A0K0K1G8 114 aa13.49□□□□□ -0.25
PTCD3-203ENST00000409783 SCGB1D1O95968 90 aa13.49□□□□□ -0.25
PTCD3-203ENST00000409783 RPL28P46779 137 aaKnown RBP13.48□□□□□ -0.25
PTCD3-203ENST00000409783 TRBV10-3A0A0K0K1G6 114 aa13.47□□□□□ -0.25
PTCD3-203ENST00000409783 SPANXB1Q9NS25 103 aaPredicted RBP13.47□□□□□ -0.25
PTCD3-203ENST00000409783 KRTAP1-4P0C5Y4 121 aa13.46□□□□□ -0.25
PTCD3-203ENST00000409783 SCGB1D4Q6XE38 83 aa13.46□□□□□ -0.25
PTCD3-203ENST00000409783 KCNQ1DNQ9H478 68 aa13.46□□□□□ -0.25
PTCD3-203ENST00000409783 KRTAP10-8P60410 259 aa13.45□□□□□ -0.26
PTCD3-203ENST00000409783 SPANXDQ9BXN6 97 aa13.45□□□□□ -0.26
PTCD3-203ENST00000409783 SPANXCQ9NY87 97 aa13.45□□□□□ -0.26
PTCD3-203ENST00000409783 HSBP1L1C9JCN9 74 aa13.44□□□□□ -0.26
PTCD3-203ENST00000409783 PRYO14603 147 aa13.44□□□□□ -0.26
PTCD3-203ENST00000409783 SPRR1AP35321 89 aa13.44□□□□□ -0.26
PTCD3-203ENST00000409783 UBE2AP49459 152 aa13.43□□□□□ -0.26
PTCD3-203ENST00000409783 PRLHP81277 87 aa13.43□□□□□ -0.26
PTCD3-203ENST00000409783 FAM19A1Q7Z5A9 133 aa13.43□□□□□ -0.26
PTCD3-203ENST00000409783 KRTAP4-16G5E9R7 235 aaPredicted RBP13.41□□□□□ -0.26
PTCD3-203ENST00000409783 IGLV6-57P01721 117 aa13.41□□□□□ -0.26
PTCD3-203ENST00000409783 DDTP30046 118 aa13.41□□□□□ -0.26
PTCD3-203ENST00000409783 TMA7Q9Y2S6 64 aaKnown RBP13.4□□□□□ -0.26
PTCD3-203ENST00000409783 JOSD1Q15040 202 aaPredicted RBP13.39□□□□□ -0.27
PTCD3-203ENST00000409783 LINC00337Q8N6G1 96 aa13.39□□□□□ -0.27
PTCD3-203ENST00000409783 Q6ZVH6 145 aa13.38□□□□□ -0.27
PTCD3-203ENST00000409783 PPDPFQ9H3Y8 114 aa13.38□□□□□ -0.27
PTCD3-203ENST00000409783 IFITM1P13164 125 aa13.36□□□□□ -0.27
PTCD3-203ENST00000409783 PRR26Q8N8Z3 221 aa13.36□□□□□ -0.27
PTCD3-203ENST00000409783 S100A7L2Q5SY68 101 aa13.35□□□□□ -0.27
PTCD3-203ENST00000409783 MUSTN1Q8IVN3 82 aa13.34□□□□□ -0.27
PTCD3-203ENST00000409783 COX8AP10176 69 aa13.33□□□□□ -0.28
PTCD3-203ENST00000409783 ETDCA0A1B0GVM5 59 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms