RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 Q8NDZ9 215 aa7.47□□□□□ -1.21
TCOF1-203ENST00000394269 TRAV10A0A0B4J240 114 aa7.46□□□□□ -1.22
TCOF1-203ENST00000394269 C6orf48Q9UBA6 75 aa7.46□□□□□ -1.22
TCOF1-203ENST00000394269 H3BNG1 76 aa7.45□□□□□ -1.22
TCOF1-203ENST00000394269 H3BT86 120 aa7.45□□□□□ -1.22
TCOF1-203ENST00000394269 LINC01561Q8N1V8 128 aa7.45□□□□□ -1.22
TCOF1-203ENST00000394269 LINC00588Q9Y4M8 146 aa7.45□□□□□ -1.22
TCOF1-203ENST00000394269 COX17Q14061 63 aa7.44□□□□□ -1.22
TCOF1-203ENST00000394269 COL7A1Q02388 2944 aa7.44□□□□□ -1.22
TCOF1-203ENST00000394269 C6orf99Q4VX62 202 aa7.44□□□□□ -1.22
TCOF1-203ENST00000394269 Q6ZRU5 148 aa7.44□□□□□ -1.22
TCOF1-203ENST00000394269 TMEM126AQ9H061 195 aa7.43□□□□□ -1.22
TCOF1-203ENST00000394269 TM2D3Q9BRN9 247 aa7.43□□□□□ -1.22
TCOF1-203ENST00000394269 C15orf53Q8NAA6 179 aa7.43□□□□□ -1.22
TCOF1-203ENST00000394269 TRACP01848 142 aa7.42□□□□□ -1.22
TCOF1-203ENST00000394269 LINC01556Q5JQF7 62 aa7.42□□□□□ -1.22
TCOF1-203ENST00000394269 MEGF8Q7Z7M0 2845 aa7.42□□□□□ -1.22
TCOF1-203ENST00000394269 H0YGX0 51 aa7.41□□□□□ -1.22
TCOF1-203ENST00000394269 CASC10Q5T4H9 136 aa7.41□□□□□ -1.22
TCOF1-203ENST00000394269 FBN3Q75N90 2809 aa7.41□□□□□ -1.22
TCOF1-203ENST00000394269 C15orf56Q8N910 161 aa7.4□□□□□ -1.22
TCOF1-203ENST00000394269 CSMD3Q7Z407 3707 aa7.4□□□□□ -1.22
TCOF1-203ENST00000394269 TTC32Q5I0X7 151 aa7.4□□□□□ -1.22
TCOF1-203ENST00000394269 GAGE2AQ6NT46 116 aa7.4□□□□□ -1.23
TCOF1-203ENST00000394269 B5MCH6 92 aa7.39□□□□□ -1.23
TCOF1-203ENST00000394269 NHLRC4P0CG21 123 aaPredicted RBP7.39□□□□□ -1.23
TCOF1-203ENST00000394269 C9orf129Q5T035 196 aaKnown RBP7.39□□□□□ -1.23
TCOF1-203ENST00000394269 C14orf132Q9NPU4 83 aa7.39□□□□□ -1.23
TCOF1-203ENST00000394269 TRBV10-3A0A0K0K1G6 114 aa7.39□□□□□ -1.23
TCOF1-203ENST00000394269 UBE2DNLQ8IWF7 75 aa7.39□□□□□ -1.23
TCOF1-203ENST00000394269 KRTAP26-1Q6PEX3 210 aa7.38□□□□□ -1.23
TCOF1-203ENST00000394269 M0QXV9 152 aa7.38□□□□□ -1.23
TCOF1-203ENST00000394269 SYCNQ0VAF6 134 aa7.38□□□□□ -1.23
TCOF1-203ENST00000394269 SNCGO76070 127 aa7.37□□□□□ -1.23
TCOF1-203ENST00000394269 NDUFC2O95298 119 aa7.37□□□□□ -1.23
TCOF1-203ENST00000394269 HUWE1Q7Z6Z7 4374 aaKnown RBP7.37□□□□□ -1.23
TCOF1-203ENST00000394269 LYSTQ99698 3801 aa7.36□□□□□ -1.23
TCOF1-203ENST00000394269 DNAH10OSP0CZ25 163 aa7.36□□□□□ -1.23
TCOF1-203ENST00000394269 SMIM20Q8N5G0 67 aa7.36□□□□□ -1.23
TCOF1-203ENST00000394269 USP17L23D6RBM5 183 aa7.36□□□□□ -1.23
TCOF1-203ENST00000394269 Q6ZRP5 223 aa7.36□□□□□ -1.23
TCOF1-203ENST00000394269 PPDPFQ9H3Y8 114 aa7.36□□□□□ -1.23
TCOF1-203ENST00000394269 ORMDL1Q9P0S3 153 aa7.36□□□□□ -1.23
TCOF1-203ENST00000394269 M0R2N4 97 aa7.36□□□□□ -1.23
TCOF1-203ENST00000394269 ANAPC13Q9BS18 74 aa7.36□□□□□ -1.23
TCOF1-203ENST00000394269 DNAH3Q8TD57 4116 aa7.35□□□□□ -1.23
TCOF1-203ENST00000394269 GAGE2BQ13066 116 aa7.35□□□□□ -1.23
TCOF1-203ENST00000394269 Q8N814 137 aa7.35□□□□□ -1.23
TCOF1-203ENST00000394269 NDUFC2-KCTD14E9PQ53 114 aa7.34□□□□□ -1.23
TCOF1-203ENST00000394269 LINC01600Q96MT4 127 aa7.34□□□□□ -1.23
TCOF1-203ENST00000394269 SRRM2Q9UQ35 2752 aaKnown RBP7.34□□□□□ -1.23
TCOF1-203ENST00000394269 PSCAO43653 123 aa7.34□□□□□ -1.23
TCOF1-203ENST00000394269 C22orf24Q9Y442 160 aa7.34□□□□□ -1.23
TCOF1-203ENST00000394269 TRAV23DV6A0A075B6W5 121 aa7.33□□□□□ -1.24
TCOF1-203ENST00000394269 GVQW2A0A096LPI5 108 aaPredicted RBP7.32□□□□□ -1.24
TCOF1-203ENST00000394269 LAMTOR3Q9UHA4 124 aa7.32□□□□□ -1.24
TCOF1-203ENST00000394269 RPL37AP8A6NKH3 93 aa7.32□□□□□ -1.24
TCOF1-203ENST00000394269 NKAPP1Q8N9T2 125 aa7.32□□□□□ -1.24
TCOF1-203ENST00000394269 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.31□□□□□ -1.24
TCOF1-203ENST00000394269 hADV29S1A0JD25 119 aa7.31□□□□□ -1.24
TCOF1-203ENST00000394269 INAFM2P0DMQ5 153 aa7.31□□□□□ -1.24
TCOF1-203ENST00000394269 Q6ZQY7 126 aa7.31□□□□□ -1.24
TCOF1-203ENST00000394269 FAM168BA1KXE4 195 aa7.31□□□□□ -1.24
TCOF1-203ENST00000394269 ZNF73O43830 326 aaPredicted RBP7.31□□□□□ -1.24
TCOF1-203ENST00000394269 DIRC1Q969H9 104 aa7.31□□□□□ -1.24
TCOF1-203ENST00000394269 C2orf48Q96LS8 159 aa7.31□□□□□ -1.24
TCOF1-203ENST00000394269 IGLV6-57P01721 117 aa7.3□□□□□ -1.24
TCOF1-203ENST00000394269 IGKV2-24A0A0C4DH68 120 aa7.3□□□□□ -1.24
TCOF1-203ENST00000394269 CCDC179H3BU77 68 aa7.3□□□□□ -1.24
TCOF1-203ENST00000394269 VPREB1P12018 145 aa7.3□□□□□ -1.24
TCOF1-203ENST00000394269 LINC00575Q6W349 94 aa7.3□□□□□ -1.24
TCOF1-203ENST00000394269 SERTAD4-AS1Q5TG53 156 aa7.29□□□□□ -1.24
TCOF1-203ENST00000394269 RMI2Q96E14 147 aa7.29□□□□□ -1.24
TCOF1-203ENST00000394269 KRTAP1-5Q9BYS1 174 aa7.29□□□□□ -1.24
TCOF1-203ENST00000394269 SMCR5Q8TEV8 140 aa7.29□□□□□ -1.24
TCOF1-203ENST00000394269 FAM19A5Q7Z5A7 132 aaPredicted RBP7.28□□□□□ -1.24
TCOF1-203ENST00000394269 TMEM256-PLSCR3K7ERE1 68 aa7.28□□□□□ -1.24
TCOF1-203ENST00000394269 M0R378 163 aa7.28□□□□□ -1.24
TCOF1-203ENST00000394269 NDUFV3P56181 108 aaKnown RBP7.28□□□□□ -1.24
TCOF1-203ENST00000394269 DEFB105AQ8NG35 78 aa7.28□□□□□ -1.24
TCOF1-203ENST00000394269 COX7BP24311 80 aa7.27□□□□□ -1.24
TCOF1-203ENST00000394269 MUC7Q8TAX7 377 aa7.27□□□□□ -1.25
TCOF1-203ENST00000394269 B9D2Q9BPU9 175 aa7.27□□□□□ -1.25
TCOF1-203ENST00000394269 SEC61GP60059 68 aa7.26□□□□□ -1.25
TCOF1-203ENST00000394269 IGKV3D-7A0A0C4DH55 119 aa7.25□□□□□ -1.25
TCOF1-203ENST00000394269 FUSP35637 526 aaKnown RBP eCLIP7.25□□□□□ -1.25
TCOF1-203ENST00000394269 C7orf33Q8WU49 177 aa7.24□□□□□ -1.25
TCOF1-203ENST00000394269 DNAH10Q8IVF4 4471 aa7.24□□□□□ -1.25
TCOF1-203ENST00000394269 LY6G6CO95867 125 aa7.24□□□□□ -1.25
TCOF1-203ENST00000394269 DPH3Q96FX2 82 aa7.24□□□□□ -1.25
TCOF1-203ENST00000394269 LINC00846Q9NV44 126 aa7.24□□□□□ -1.25
TCOF1-203ENST00000394269 FAM240AA0A1B0GVK7 77 aa7.23□□□□□ -1.25
TCOF1-203ENST00000394269 ACYP1P07311 99 aa7.23□□□□□ -1.25
TCOF1-203ENST00000394269 APLNQ9ULZ1 77 aa7.23□□□□□ -1.25
TCOF1-203ENST00000394269 DNAH9Q9NYC9 4486 aa7.23□□□□□ -1.25
TCOF1-203ENST00000394269 RBM3P98179 157 aaKnown RBP7.23□□□□□ -1.25
TCOF1-203ENST00000394269 SDIM1Q6ZPB5 146 aa7.23□□□□□ -1.25
TCOF1-203ENST00000394269 A0A1B0GX51 115 aa7.22□□□□□ -1.25
TCOF1-203ENST00000394269 JMJD7-PLA2G4BH0Y9G9 81 aa7.21□□□□□ -1.25
TCOF1-203ENST00000394269 UPK3BQ9BT76 320 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms