RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 HIST2H2BEQ16778 126 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 ATP5EP56381 51 aaPredicted RBP2.75□□□□□ -1.97
USH2A-202ENST00000366942 LINC00483Q53H64 154 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 SCXQ7RTU7 201 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 FAM167A-AS1Q96KT0 104 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 LINC00242Q5T6M2 205 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 Q8N1X5 172 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 REV3LO60673 3130 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 ST20-AS1Q8NBB2 130 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 TEP1Q99973 2627 aaKnown RBP2.75□□□□□ -1.97
USH2A-202ENST00000366942 C9orf92A6NGG3 77 aa2.74□□□□□ -1.97
USH2A-202ENST00000366942 TRAV22A0A0B4J277 110 aa2.74□□□□□ -1.97
USH2A-202ENST00000366942 NOTCH4Q99466 2003 aa2.74□□□□□ -1.97
USH2A-202ENST00000366942 LOC101927531A0A1B0GV80 90 aa2.74□□□□□ -1.97
USH2A-202ENST00000366942 CNBPP62633 177 aaKnown RBP2.74□□□□□ -1.97
USH2A-202ENST00000366942 COX8AP10176 69 aa2.74□□□□□ -1.97
USH2A-202ENST00000366942 SVIPQ8NHG7 77 aa2.74□□□□□ -1.97
USH2A-202ENST00000366942 F8W1H4 67 aa2.73□□□□□ -1.97
USH2A-202ENST00000366942 CD164Q04900 197 aa2.73□□□□□ -1.97
USH2A-202ENST00000366942 NTM-AS1Q6ZSK4 140 aa2.73□□□□□ -1.97
USH2A-202ENST00000366942 CSNK1G2-AS1Q8NCQ2 148 aa2.73□□□□□ -1.97
USH2A-202ENST00000366942 LINC00208Q96KT6 92 aa2.73□□□□□ -1.97
USH2A-202ENST00000366942 ARID2Q68CP9 1835 aa2.73□□□□□ -1.97
USH2A-202ENST00000366942 AGRNO00468 2067 aa2.73□□□□□ -1.97
USH2A-202ENST00000366942 SMIM26A0A096LP01 95 aa2.73□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BKO60814 126 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BDP58876 126 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BCP62807 126 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.72□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BHQ93079 126 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BNQ99877 126 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BMQ99879 126 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 K7EP34 96 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 HIGD1BQ9P298 99 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 ATG2AQ2TAZ0 1938 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 UQCRQO14949 82 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 POLR2KP53803 58 aaKnown RBP2.72□□□□□ -1.97
USH2A-202ENST00000366942 IGKV3D-7A0A0C4DH55 119 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 PRM2P04554 102 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 LINC01554Q52M75 96 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 C11orf72Q8NBR9 251 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 LINC00643Q86TS7 51 aa2.72□□□□□ -1.97
USH2A-202ENST00000366942 IGSF10Q6WRI0 2623 aa2.71□□□□□ -1.97
USH2A-202ENST00000366942 H3BPC8 53 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 K7EQZ3 153 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 PRR15Q8IV56 129 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 ARHGAP21Q5T5U3 1957 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 LINC00612Q8N6U2 182 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 CYYR1Q96J86 154 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 OBSCN-AS1Q96MR7 158 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 PYY3Q5JQD4 70 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 IGLV5-39A0A0G2JS06 123 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 A8MUN3 132 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 Q6ZRX8 168 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 PRR26Q8N8Z3 221 aa2.71□□□□□ -1.98
USH2A-202ENST00000366942 TNRC18O15417 2968 aaPredicted RBP2.7□□□□□ -1.98
USH2A-202ENST00000366942 H0Y9P7 68 aa2.7□□□□□ -1.98
USH2A-202ENST00000366942 ZNF80P51504 273 aaPredicted RBP2.7□□□□□ -1.98
USH2A-202ENST00000366942 CENPFP49454 3210 aa2.7□□□□□ -1.98
USH2A-202ENST00000366942 CRIPTQ9P021 101 aa2.7□□□□□ -1.98
USH2A-202ENST00000366942 A6NED7 52 aa2.69□□□□□ -1.98
USH2A-202ENST00000366942 C2orf16Q68DN1 1984 aa2.69□□□□□ -1.98
USH2A-202ENST00000366942 ANAPC1Q9H1A4 1944 aa2.69□□□□□ -1.98
USH2A-202ENST00000366942 SMIM1B2RUZ4 78 aa2.69□□□□□ -1.98
USH2A-202ENST00000366942 A0A096LNT2 108 aa2.69□□□□□ -1.98
USH2A-202ENST00000366942 KRTAP1-1Q07627 177 aa2.69□□□□□ -1.98
USH2A-202ENST00000366942 A0A1B0GU69 56 aa2.68□□□□□ -1.98
USH2A-202ENST00000366942 C6orf48Q9UBA6 75 aa2.68□□□□□ -1.98
USH2A-202ENST00000366942 STAB2Q8WWQ8 2551 aa2.68□□□□□ -1.98
USH2A-202ENST00000366942 ALPK3Q96L96 1907 aa2.68□□□□□ -1.98
USH2A-202ENST00000366942 PRR9Q5T870 116 aa2.68□□□□□ -1.98
USH2A-202ENST00000366942 MRPL34Q9BQ48 92 aaKnown RBP2.68□□□□□ -1.98
USH2A-202ENST00000366942 COLCA2A8K830 154 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 MRPS12O15235 138 aaKnown RBP2.67□□□□□ -1.98
USH2A-202ENST00000366942 PCOTHQ58A44 107 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 SMIM11BQ8TCY0 68 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 PCNX3Q9H6A9 2034 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 C9orf118A6NHY6 69 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 TLX1NBP0CAT3 122 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 DSCAML1Q8TD84 2053 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 DLEU1O43261 78 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 COL6A5A8TX70 2615 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 IGFL1Q6UW32 110 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 PLXNA2O75051 1894 aa2.67□□□□□ -1.98
USH2A-202ENST00000366942 PRR3P79522 188 aaKnown RBP2.66□□□□□ -1.98
USH2A-202ENST00000366942 AMELXQ99217 191 aa2.66□□□□□ -1.98
USH2A-202ENST00000366942 C1orf64Q8NEQ6 169 aa2.66□□□□□ -1.98
USH2A-202ENST00000366942 CFAP46Q8IYW2 2715 aa2.66□□□□□ -1.98
USH2A-202ENST00000366942 EXPH5Q8NEV8 1989 aa2.66□□□□□ -1.98
USH2A-202ENST00000366942 DENND4CQ5VZ89 1909 aa2.66□□□□□ -1.98
USH2A-202ENST00000366942 IGLV5-48A0A075B6I7 105 aa2.66□□□□□ -1.98
USH2A-202ENST00000366942 KRTAP1-3Q8IUG1 177 aa2.66□□□□□ -1.98
USH2A-202ENST00000366942 SPRR4Q96PI1 79 aa2.66□□□□□ -1.98
USH2A-202ENST00000366942 ENHOQ6UWT2 76 aa2.66□□□□□ -1.98
USH2A-202ENST00000366942 PLAC8Q9NZF1 115 aa2.66□□□□□ -1.98
USH2A-202ENST00000366942 MUC22E2RYF6 1773 aaPredicted RBP2.65□□□□□ -1.98
USH2A-202ENST00000366942 R4GN34 69 aa2.65□□□□□ -1.98
USH2A-202ENST00000366942 FAM240AA0A1B0GVK7 77 aa2.65□□□□□ -1.99
USH2A-202ENST00000366942 TRBV7-7A0A0K0K1E9 115 aa2.65□□□□□ -1.99
USH2A-202ENST00000366942 CRIP3Q6Q6R5 217 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms