RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 C2orf48Q96LS8 159 aa14.93□□□□□ -0.02
SHMT1-201ENST00000316694 ATRQ13535 2644 aa14.91□□□□□ -0.02
SHMT1-201ENST00000316694 Q8NAQ8 132 aa14.9□□□□□ -0.02
SHMT1-201ENST00000316694 KLK12Q9UKR0 248 aa14.9□□□□□ -0.02
SHMT1-201ENST00000316694 CYSRT1A8MQ03 144 aa14.89□□□□□ -0.03
SHMT1-201ENST00000316694 LINC00575Q6W349 94 aa14.88□□□□□ -0.03
SHMT1-201ENST00000316694 LELP1Q5T871 98 aa14.88□□□□□ -0.03
SHMT1-201ENST00000316694 SPART-AS1P0CW21 52 aa14.87□□□□□ -0.03
SHMT1-201ENST00000316694 MIFP14174 115 aa14.86□□□□□ -0.03
SHMT1-201ENST00000316694 USP17L23D6RBM5 183 aa14.86□□□□□ -0.03
SHMT1-201ENST00000316694 WFDC9Q8NEX5 89 aa14.86□□□□□ -0.03
SHMT1-201ENST00000316694 hADV29S1A0JD25 119 aa14.85□□□□□ -0.03
SHMT1-201ENST00000316694 TEP1Q99973 2627 aaKnown RBP14.84□□□□□ -0.03
SHMT1-201ENST00000316694 CRYGAP11844 174 aa14.84□□□□□ -0.03
SHMT1-201ENST00000316694 A0A0J9YWU9 116 aa14.83□□□□□ -0.04
SHMT1-201ENST00000316694 IGHV4-30-4P0DP06 118 aa14.83□□□□□ -0.04
SHMT1-201ENST00000316694 HIVEP1P15822 2718 aa14.82□□□□□ -0.04
SHMT1-201ENST00000316694 ENHOQ6UWT2 76 aa14.82□□□□□ -0.04
SHMT1-201ENST00000316694 PRR34Q9NV39 138 aa14.82□□□□□ -0.04
SHMT1-201ENST00000316694 SERP2Q8N6R1 65 aa14.82□□□□□ -0.04
SHMT1-201ENST00000316694 LAMTOR3Q9UHA4 124 aa14.82□□□□□ -0.04
SHMT1-201ENST00000316694 IGLV6-57P01721 117 aa14.81□□□□□ -0.04
SHMT1-201ENST00000316694 RBM3P98179 157 aaKnown RBP14.81□□□□□ -0.04
SHMT1-201ENST00000316694 CYSTM1Q9H1C7 97 aa14.8□□□□□ -0.04
SHMT1-201ENST00000316694 XAGE1AQ9HD64 81 aa14.8□□□□□ -0.04
SHMT1-201ENST00000316694 MUC7Q8TAX7 377 aa14.8□□□□□ -0.04
SHMT1-201ENST00000316694 UBL5Q9BZL1 73 aa14.8□□□□□ -0.04
SHMT1-201ENST00000316694 ZNF561-AS1K7EIQ3 104 aa14.78□□□□□ -0.04
SHMT1-201ENST00000316694 ATP5EP2Q5VTU8 51 aa14.78□□□□□ -0.04
SHMT1-201ENST00000316694 FAM19A1Q7Z5A9 133 aa14.78□□□□□ -0.04
SHMT1-201ENST00000316694 C6orf48Q9UBA6 75 aa14.78□□□□□ -0.04
SHMT1-201ENST00000316694 TRBV10-3A0A0K0K1G6 114 aa14.77□□□□□ -0.05
SHMT1-201ENST00000316694 Q6ZQY7 126 aa14.77□□□□□ -0.05
SHMT1-201ENST00000316694 Q6ZQT0 140 aa14.76□□□□□ -0.05
SHMT1-201ENST00000316694 LYPD5Q6UWN5 251 aa14.76□□□□□ -0.05
SHMT1-201ENST00000316694 TRAV23DV6A0A075B6W5 121 aa14.75□□□□□ -0.05
SHMT1-201ENST00000316694 GVQW2A0A096LPI5 108 aaPredicted RBP14.73□□□□□ -0.05
SHMT1-201ENST00000316694 M0R2N4 97 aa14.72□□□□□ -0.05
SHMT1-201ENST00000316694 HIGD2BQ4VC39 106 aa14.72□□□□□ -0.05
SHMT1-201ENST00000316694 UPK3BQ9BT76 320 aa14.72□□□□□ -0.05
SHMT1-201ENST00000316694 DIRC1Q969H9 104 aa14.71□□□□□ -0.05
SHMT1-201ENST00000316694 LOC110117498A0A087WWA1 95 aa14.71□□□□□ -0.05
SHMT1-201ENST00000316694 GHRHP01286 108 aa14.71□□□□□ -0.05
SHMT1-201ENST00000316694 DSCR8Q96T75 97 aa14.71□□□□□ -0.05
SHMT1-201ENST00000316694 LOC107984640A0A0U1RRK4 108 aa14.7□□□□□ -0.06
SHMT1-201ENST00000316694 WFDC10BQ8IUB3 73 aa14.7□□□□□ -0.06
SHMT1-201ENST00000316694 CAMK2N2Q96S95 79 aa14.68□□□□□ -0.06
SHMT1-201ENST00000316694 ZNF73O43830 326 aaPredicted RBP14.68□□□□□ -0.06
SHMT1-201ENST00000316694 HAMPP81172 84 aa14.66□□□□□ -0.06
SHMT1-201ENST00000316694 J3KT08 172 aa14.65□□□□□ -0.06
SHMT1-201ENST00000316694 COX7BP24311 80 aa14.65□□□□□ -0.06
SHMT1-201ENST00000316694 RETNQ9HD89 108 aa14.64□□□□□ -0.07
SHMT1-201ENST00000316694 KPRPQ5T749 579 aaPredicted RBP14.64□□□□□ -0.07
SHMT1-201ENST00000316694 PKD1L1Q8TDX9 2849 aa14.63□□□□□ -0.07
SHMT1-201ENST00000316694 LINC01547P58512 204 aaPredicted RBP14.63□□□□□ -0.07
SHMT1-201ENST00000316694 Q6ZVQ6 151 aa14.63□□□□□ -0.07
SHMT1-201ENST00000316694 TMEM258P61165 79 aa14.62□□□□□ -0.07
SHMT1-201ENST00000316694 VPREB1P12018 145 aa14.61□□□□□ -0.07
SHMT1-201ENST00000316694 Q6ZRU5 148 aa14.61□□□□□ -0.07
SHMT1-201ENST00000316694 H3BQ85 93 aa14.6□□□□□ -0.07
SHMT1-201ENST00000316694 ELOF1P60002 83 aaKnown RBP14.6□□□□□ -0.07
SHMT1-201ENST00000316694 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.6□□□□□ -0.07
SHMT1-201ENST00000316694 PDE6GP18545 87 aa14.59□□□□□ -0.07
SHMT1-201ENST00000316694 OXLD1Q5BKU9 147 aa14.58□□□□□ -0.07
SHMT1-201ENST00000316694 ANK2Q01484 3957 aa14.58□□□□□ -0.08
SHMT1-201ENST00000316694 EGFEM1PQ0D2K5 195 aa14.58□□□□□ -0.08
SHMT1-201ENST00000316694 KRTAP26-1Q6PEX3 210 aa14.58□□□□□ -0.08
SHMT1-201ENST00000316694 Q6ZTC4 211 aa14.58□□□□□ -0.08
SHMT1-201ENST00000316694 C15orf56Q8N910 161 aa14.57□□□□□ -0.08
SHMT1-201ENST00000316694 M0R378 163 aa14.56□□□□□ -0.08
SHMT1-201ENST00000316694 WIPF1O43516 503 aa14.56□□□□□ -0.08
SHMT1-201ENST00000316694 NDUFC2-KCTD14E9PQ53 114 aa14.54□□□□□ -0.08
SHMT1-201ENST00000316694 C20orf197Q8N268 126 aa14.54□□□□□ -0.08
SHMT1-201ENST00000316694 TRBV7-4A0A0J9YYF1 115 aa14.54□□□□□ -0.08
SHMT1-201ENST00000316694 DPH3Q96FX2 82 aa14.54□□□□□ -0.08
SHMT1-201ENST00000316694 TRBV7-6A0A0J9YX20 115 aa14.53□□□□□ -0.08
SHMT1-201ENST00000316694 RPS28P62857 69 aaKnown RBP14.53□□□□□ -0.08
SHMT1-201ENST00000316694 ESRGQ1W209 222 aa14.53□□□□□ -0.08
SHMT1-201ENST00000316694 FAM19A5Q7Z5A7 132 aaPredicted RBP14.53□□□□□ -0.08
SHMT1-201ENST00000316694 H3BNG1 76 aa14.52□□□□□ -0.08
SHMT1-201ENST00000316694 KRTAP10-11P60412 298 aa14.52□□□□□ -0.09
SHMT1-201ENST00000316694 SCXQ7RTU7 201 aa14.52□□□□□ -0.09
SHMT1-201ENST00000316694 C1orf43Q9BWL3 253 aa14.52□□□□□ -0.09
SHMT1-201ENST00000316694 IGKV2D-24A0A075B6R9 120 aa14.5□□□□□ -0.09
SHMT1-201ENST00000316694 Q6ZRP5 223 aa14.5□□□□□ -0.09
SHMT1-201ENST00000316694 CXCL6P80162 114 aa14.5□□□□□ -0.09
SHMT1-201ENST00000316694 LINC00528Q8N1L1 170 aa14.5□□□□□ -0.09
SHMT1-201ENST00000316694 TRAV10A0A0B4J240 114 aa14.49□□□□□ -0.09
SHMT1-201ENST00000316694 TENM3Q9P273 2699 aa14.49□□□□□ -0.09
SHMT1-201ENST00000316694 F8P00451 2351 aa14.48□□□□□ -0.09
SHMT1-201ENST00000316694 TRAV7A0A075B6U4 112 aa14.46□□□□□ -0.09
SHMT1-201ENST00000316694 STAB1Q9NY15 2570 aa14.44□□□□□ -0.1
SHMT1-201ENST00000316694 SYCNQ0VAF6 134 aa14.43□□□□□ -0.1
SHMT1-201ENST00000316694 OXTP01178 125 aa14.42□□□□□ -0.1
SHMT1-201ENST00000316694 FBN1P35555 2871 aaKnown RBP14.42□□□□□ -0.1
SHMT1-201ENST00000316694 BCE1O60756 84 aa14.41□□□□□ -0.1
SHMT1-201ENST00000316694 DEFB131BA0A096LNP1 70 aa14.41□□□□□ -0.1
SHMT1-201ENST00000316694 LINC01556Q5JQF7 62 aa14.41□□□□□ -0.1
SHMT1-201ENST00000316694 NKAPP1Q8N9T2 125 aa14.4□□□□□ -0.1
SHMT1-201ENST00000316694 CMYA5Q8N3K9 4069 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms