RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 LINC00208Q96KT6 92 aa12.76□□□□□ -0.37
PCDH1-201ENST00000287008 ATP5EP56381 51 aaPredicted RBP12.76□□□□□ -0.37
PCDH1-201ENST00000287008 LINC00167Q96N53 147 aa12.75□□□□□ -0.37
PCDH1-201ENST00000287008 C6orf48Q9UBA6 75 aa12.75□□□□□ -0.37
PCDH1-201ENST00000287008 SPTSSBQ8NFR3 76 aa12.75□□□□□ -0.37
PCDH1-201ENST00000287008 CEP350Q5VT06 3117 aa12.75□□□□□ -0.37
PCDH1-201ENST00000287008 DNAH12Q6ZR08 3092 aa12.74□□□□□ -0.37
PCDH1-201ENST00000287008 BRK1Q8WUW1 75 aa12.73□□□□□ -0.37
PCDH1-201ENST00000287008 COX7CP15954 63 aa12.73□□□□□ -0.37
PCDH1-201ENST00000287008 LINC00588Q9Y4M8 146 aa12.73□□□□□ -0.37
PCDH1-201ENST00000287008 V9GYY9 64 aa12.72□□□□□ -0.37
PCDH1-201ENST00000287008 PCSK5Q92824 1860 aa12.71□□□□□ -0.37
PCDH1-201ENST00000287008 STAB1Q9NY15 2570 aa12.71□□□□□ -0.37
PCDH1-201ENST00000287008 IGLV5-45A0A087WSX0 123 aa12.7□□□□□ -0.38
PCDH1-201ENST00000287008 Q8N3U1 123 aa12.7□□□□□ -0.38
PCDH1-201ENST00000287008 LINC01546A6NGU7 62 aa12.69□□□□□ -0.38
PCDH1-201ENST00000287008 A0A096LNT2 108 aa12.69□□□□□ -0.38
PCDH1-201ENST00000287008 FAM229AH3BQW9 127 aa12.69□□□□□ -0.38
PCDH1-201ENST00000287008 DEFB116Q30KQ4 102 aa12.69□□□□□ -0.38
PCDH1-201ENST00000287008 TRAV7A0A075B6U4 112 aa12.68□□□□□ -0.38
PCDH1-201ENST00000287008 C16orf90A8MZG2 172 aa12.68□□□□□ -0.38
PCDH1-201ENST00000287008 A0A087WVE0 104 aa12.68□□□□□ -0.38
PCDH1-201ENST00000287008 SVIPQ8NHG7 77 aa12.67□□□□□ -0.38
PCDH1-201ENST00000287008 RTL8CO15255 209 aa12.67□□□□□ -0.38
PCDH1-201ENST00000287008 KIAA0087Q14695 138 aa12.64□□□□□ -0.39
PCDH1-201ENST00000287008 Q6Q795 121 aa12.64□□□□□ -0.39
PCDH1-201ENST00000287008 RETNLBQ9BQ08 111 aa12.64□□□□□ -0.39
PCDH1-201ENST00000287008 TEP1Q99973 2627 aaKnown RBP12.63□□□□□ -0.39
PCDH1-201ENST00000287008 K7EIL1 84 aa12.63□□□□□ -0.39
PCDH1-201ENST00000287008 MOBPQ13875 183 aa12.62□□□□□ -0.39
PCDH1-201ENST00000287008 SPACA4Q8TDM5 124 aa12.62□□□□□ -0.39
PCDH1-201ENST00000287008 DNAH10OSP0CZ25 163 aa12.61□□□□□ -0.39
PCDH1-201ENST00000287008 Q6ZRP5 223 aa12.61□□□□□ -0.39
PCDH1-201ENST00000287008 PHF5AQ7RTV0 110 aaKnown RBP12.6□□□□□ -0.39
PCDH1-201ENST00000287008 CRYGAP11844 174 aa12.6□□□□□ -0.39
PCDH1-201ENST00000287008 LINC00846Q9NV44 126 aa12.59□□□□□ -0.39
PCDH1-201ENST00000287008 TRBV7-6A0A0J9YX20 115 aa12.59□□□□□ -0.39
PCDH1-201ENST00000287008 A6NED7 52 aa12.58□□□□□ -0.4
PCDH1-201ENST00000287008 GVQW2A0A096LPI5 108 aaPredicted RBP12.58□□□□□ -0.4
PCDH1-201ENST00000287008 PCOTHQ58A44 107 aa12.58□□□□□ -0.4
PCDH1-201ENST00000287008 HCG22E2RYF7 251 aa12.56□□□□□ -0.4
PCDH1-201ENST00000287008 CSNK1G2-AS1Q8NCQ2 148 aa12.56□□□□□ -0.4
PCDH1-201ENST00000287008 SOSTDC1Q6X4U4 206 aa12.56□□□□□ -0.4
PCDH1-201ENST00000287008 H0Y9P7 68 aa12.55□□□□□ -0.4
PCDH1-201ENST00000287008 SPATA3Q8NHX4 192 aa12.54□□□□□ -0.4
PCDH1-201ENST00000287008 CCDC179H3BU77 68 aa12.54□□□□□ -0.4
PCDH1-201ENST00000287008 KRTAP10-11P60412 298 aa12.54□□□□□ -0.4
PCDH1-201ENST00000287008 Q6ZRX8 168 aa12.53□□□□□ -0.4
PCDH1-201ENST00000287008 CHTF8P0CG12 524 aa12.53□□□□□ -0.4
PCDH1-201ENST00000287008 C19orf73Q9NVV2 129 aa12.53□□□□□ -0.4
PCDH1-201ENST00000287008 UTRNP46939 3433 aa12.52□□□□□ -0.41
PCDH1-201ENST00000287008 ELOF1P60002 83 aaKnown RBP12.52□□□□□ -0.41
PCDH1-201ENST00000287008 AKAP13Q12802 2813 aa12.51□□□□□ -0.41
PCDH1-201ENST00000287008 EPM2AB3EWF7 344 aa12.51□□□□□ -0.41
PCDH1-201ENST00000287008 SPINK1P00995 79 aa12.51□□□□□ -0.41
PCDH1-201ENST00000287008 TYMSOSQ8TAI1 123 aa12.5□□□□□ -0.41
PCDH1-201ENST00000287008 IGKV2D-30A0A075B6S6 120 aa12.49□□□□□ -0.41
PCDH1-201ENST00000287008 IGKV2-30P06310 120 aa12.49□□□□□ -0.41
PCDH1-201ENST00000287008 TRBV7-7A0A0K0K1E9 115 aa12.49□□□□□ -0.41
PCDH1-201ENST00000287008 CXCL6P80162 114 aa12.48□□□□□ -0.41
PCDH1-201ENST00000287008 Q8NBF4 154 aa12.47□□□□□ -0.41
PCDH1-201ENST00000287008 CHD7Q9P2D1 2997 aa12.47□□□□□ -0.41
PCDH1-201ENST00000287008 A0A1B0GW54 56 aa12.46□□□□□ -0.41
PCDH1-201ENST00000287008 KRTAP10-3P60369 221 aa12.46□□□□□ -0.41
PCDH1-201ENST00000287008 BCE1O60756 84 aa12.46□□□□□ -0.42
PCDH1-201ENST00000287008 TMEM254Q8TBM7 123 aa12.45□□□□□ -0.42
PCDH1-201ENST00000287008 KRTAP1-3Q8IUG1 177 aa12.45□□□□□ -0.42
PCDH1-201ENST00000287008 SMIM26A0A096LP01 95 aa12.45□□□□□ -0.42
PCDH1-201ENST00000287008 LINC00476Q8WZB0 136 aa12.44□□□□□ -0.42
PCDH1-201ENST00000287008 PLA2G1BP04054 148 aaKnown RBP12.43□□□□□ -0.42
PCDH1-201ENST00000287008 FAM218AQ96MZ4 157 aa12.42□□□□□ -0.42
PCDH1-201ENST00000287008 GIG44P09565 113 aaPredicted RBP12.41□□□□□ -0.42
PCDH1-201ENST00000287008 VPREB1P12018 145 aa12.41□□□□□ -0.42
PCDH1-201ENST00000287008 C1orf64Q8NEQ6 169 aa12.41□□□□□ -0.42
PCDH1-201ENST00000287008 hDV103S1A0JD37 113 aa12.41□□□□□ -0.42
PCDH1-201ENST00000287008 ST20-AS1Q8NBB2 130 aa12.4□□□□□ -0.42
PCDH1-201ENST00000287008 TEX15Q9BXT5 2789 aa12.4□□□□□ -0.43
PCDH1-201ENST00000287008 KRTAP1-1Q07627 177 aa12.39□□□□□ -0.43
PCDH1-201ENST00000287008 COL6A5A8TX70 2615 aa12.39□□□□□ -0.43
PCDH1-201ENST00000287008 TM2D3Q9BRN9 247 aa12.38□□□□□ -0.43
PCDH1-201ENST00000287008 TP53AIP1Q9HCN2 124 aa12.38□□□□□ -0.43
PCDH1-201ENST00000287008 A0A0U1RQV1 116 aa12.38□□□□□ -0.43
PCDH1-201ENST00000287008 PRR34Q9NV39 138 aa12.37□□□□□ -0.43
PCDH1-201ENST00000287008 ZNF292O60281 2723 aa12.37□□□□□ -0.43
PCDH1-201ENST00000287008 RPL37AP61513 92 aaKnown RBP12.37□□□□□ -0.43
PCDH1-201ENST00000287008 RANBP2P49792 3224 aaKnown RBP12.37□□□□□ -0.43
PCDH1-201ENST00000287008 J3QL48 77 aa12.36□□□□□ -0.43
PCDH1-201ENST00000287008 SMIM29Q86T20 159 aa12.35□□□□□ -0.43
PCDH1-201ENST00000287008 PCNTO95613 3336 aa12.35□□□□□ -0.43
PCDH1-201ENST00000287008 LINC00612Q8N6U2 182 aa12.34□□□□□ -0.43
PCDH1-201ENST00000287008 FAM168BA1KXE4 195 aa12.34□□□□□ -0.43
PCDH1-201ENST00000287008 IGLV6-57P01721 117 aa12.32□□□□□ -0.44
PCDH1-201ENST00000287008 LINC00313P59037 77 aa12.31□□□□□ -0.44
PCDH1-201ENST00000287008 SERTAD4-AS1Q5TG53 156 aa12.31□□□□□ -0.44
PCDH1-201ENST00000287008 Q6ZQT0 140 aa12.31□□□□□ -0.44
PCDH1-201ENST00000287008 A0A087WTM6 91 aa12.3□□□□□ -0.44
PCDH1-201ENST00000287008 CHD6Q8TD26 2715 aa12.29□□□□□ -0.44
PCDH1-201ENST00000287008 SMCPP49901 116 aaPredicted RBP12.29□□□□□ -0.44
PCDH1-201ENST00000287008 LITAFQ99732 161 aa12.29□□□□□ -0.44
PCDH1-201ENST00000287008 LOC110117498A0A087WWA1 95 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms