RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 SPANXN1Q5VSR9 72 aa2.79□□□□□ -1.96
CD44-202ENST00000278385 ARL17AQ8IVW1 177 aa2.79□□□□□ -1.96
CD44-202ENST00000278385 SMCO4Q9NRQ5 59 aa2.79□□□□□ -1.96
CD44-202ENST00000278385 CACFD1Q9UGQ2 172 aa2.79□□□□□ -1.96
CD44-202ENST00000278385 S4R3C0 116 aa2.79□□□□□ -1.96
CD44-202ENST00000278385 VWFP04275 2813 aa2.78□□□□□ -1.96
CD44-202ENST00000278385 PKD1L1Q8TDX9 2849 aa2.78□□□□□ -1.96
CD44-202ENST00000278385 IGHV3-64A0A075B6Q5 118 aa2.78□□□□□ -1.96
CD44-202ENST00000278385 A0A087WSZ3 146 aa2.78□□□□□ -1.96
CD44-202ENST00000278385 I3L2K1 104 aa2.78□□□□□ -1.96
CD44-202ENST00000278385 CTSGP08311 255 aa2.78□□□□□ -1.96
CD44-202ENST00000278385 ADCYAP1P18509 176 aa2.78□□□□□ -1.96
CD44-202ENST00000278385 SPANXN5Q5MJ07 72 aa2.78□□□□□ -1.96
CD44-202ENST00000278385 SMIM4Q8WVI0 70 aa2.78□□□□□ -1.96
CD44-202ENST00000278385 HUWE1Q7Z6Z7 4374 aaKnown RBP2.77□□□□□ -1.97
CD44-202ENST00000278385 NOTCH1P46531 2555 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 NACAE9PAV3 2078 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 IGLV10-54A0A075B6I4 117 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 IGHV3OR16-8A0A075B7F1 116 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 A0A1B0GVY2 172 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 hADV29S1A0JD25 119 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 CRYM-AS1A6NIL9 109 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 IGKCP01834 107 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 BAALC-AS2P0C853 105 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 RNASE2P10153 161 aaKnown RBP2.77□□□□□ -1.97
CD44-202ENST00000278385 FAUP35544 74 aaKnown RBP2.77□□□□□ -1.97
CD44-202ENST00000278385 ZNF345Q14585 488 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 C20orf78Q9BR46 151 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 RHPN1-AS1Q9BWJ2 59 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 NDUFA12Q9UI09 145 aa2.77□□□□□ -1.97
CD44-202ENST00000278385 TRAV2A0A0B4J234 112 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 CEBPZOSA8MTT3 80 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 ATOX1O00244 68 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 NUPR1O60356 82 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 CCKP06307 115 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 RBM3P98179 157 aaKnown RBP2.76□□□□□ -1.97
CD44-202ENST00000278385 RHOHQ15669 191 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 Q1T7F1 81 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 KRTAP25-1Q3LHN0 102 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 SPINK9Q5DT21 86 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 CASC2Q6XLA1 102 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 TMEM136Q6ZRR5 245 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 LINC00612Q8N6U2 182 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 TMEM141Q96I45 108 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 WFDC10AQ9H1F0 79 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 RABAC1Q9UI14 185 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 MUC4Q99102 2169 aa2.76□□□□□ -1.97
CD44-202ENST00000278385 LCE6AA0A183 80 aa2.75□□□□□ -1.97
CD44-202ENST00000278385 MIFP14174 115 aa2.75□□□□□ -1.97
CD44-202ENST00000278385 PYDC2Q56P42 97 aa2.75□□□□□ -1.97
CD44-202ENST00000278385 NMSQ5H8A3 153 aa2.75□□□□□ -1.97
CD44-202ENST00000278385 S100A7L2Q5SY68 101 aa2.75□□□□□ -1.97
CD44-202ENST00000278385 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.75□□□□□ -1.97
CD44-202ENST00000278385 TOMM5Q8N4H5 51 aa2.75□□□□□ -1.97
CD44-202ENST00000278385 MRPL35Q9NZE8 188 aaKnown RBP2.75□□□□□ -1.97
CD44-202ENST00000278385 IGKV3-7A0A075B6H7 116 aa2.74□□□□□ -1.97
CD44-202ENST00000278385 IGLV2-18A0A075B6J9 118 aa2.74□□□□□ -1.97
CD44-202ENST00000278385 NAP1L6A6NFF2 107 aa2.74□□□□□ -1.97
CD44-202ENST00000278385 IGKV1-17P01599 117 aa2.74□□□□□ -1.97
CD44-202ENST00000278385 DEFB131AP59861 70 aa2.74□□□□□ -1.97
CD44-202ENST00000278385 MRPL36Q9P0J6 103 aaKnown RBP2.74□□□□□ -1.97
CD44-202ENST00000278385 KLK12Q9UKR0 248 aa2.74□□□□□ -1.97
CD44-202ENST00000278385 SORL1Q92673 2214 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 A0A0J9YX75 114 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 NUPR2A6NF83 97 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 SNRPGP15A8MWD9 76 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 H3BRM9 83 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 CFDP00746 253 aaPredicted RBP2.73□□□□□ -1.97
CD44-202ENST00000278385 KRTDAPP60985 99 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 SEC11AP67812 179 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 ADIRFQ15847 76 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 ZNF79Q15937 498 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 DEFB135Q30KP9 77 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 TMEM254Q8TBM7 123 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 ST20Q9HBF5 79 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 V9GYH0 126 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 TNCP24821 2201 aa2.73□□□□□ -1.97
CD44-202ENST00000278385 TRAV10A0A0B4J240 114 aa2.72□□□□□ -1.97
CD44-202ENST00000278385 HMSDA8MTL9 139 aa2.72□□□□□ -1.97
CD44-202ENST00000278385 UBE2G1P62253 170 aa2.72□□□□□ -1.97
CD44-202ENST00000278385 FAM213BQ8TBF2 198 aa2.72□□□□□ -1.97
CD44-202ENST00000278385 PPDPFLQ8WWR9 84 aa2.72□□□□□ -1.97
CD44-202ENST00000278385 S100ZQ8WXG8 99 aa2.72□□□□□ -1.97
CD44-202ENST00000278385 TRGV9Q99603 122 aa2.72□□□□□ -1.97
CD44-202ENST00000278385 MGST2Q99735 147 aa2.72□□□□□ -1.97
CD44-202ENST00000278385 PRR34Q9NV39 138 aa2.72□□□□□ -1.97
CD44-202ENST00000278385 LINC00474Q9P2X8 69 aa2.72□□□□□ -1.97
CD44-202ENST00000278385 KMT2CQ8NEZ4 4911 aaKnown RBP2.71□□□□□ -1.98
CD44-202ENST00000278385 TGP01266 2768 aa2.71□□□□□ -1.98
CD44-202ENST00000278385 ERC2-IT1O76042 136 aa2.71□□□□□ -1.98
CD44-202ENST00000278385 P0C880 135 aa2.71□□□□□ -1.98
CD44-202ENST00000278385 IAPPP10997 89 aa2.71□□□□□ -1.98
CD44-202ENST00000278385 HINT1P49773 126 aaPredicted RBP2.71□□□□□ -1.98
CD44-202ENST00000278385 MIR22HGQ0VDD5 57 aa2.71□□□□□ -1.98
CD44-202ENST00000278385 LINC00483Q53H64 154 aa2.71□□□□□ -1.98
CD44-202ENST00000278385 C9orf116Q5BN46 136 aaPredicted RBP2.71□□□□□ -1.98
CD44-202ENST00000278385 PSMG4Q5JS54 123 aa2.71□□□□□ -1.98
CD44-202ENST00000278385 SERP2Q8N6R1 65 aa2.71□□□□□ -1.98
CD44-202ENST00000278385 CYTL1Q9NRR1 136 aa2.71□□□□□ -1.98
CD44-202ENST00000278385 SPCS1Q9Y6A9 102 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms