RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 HIGD2BQ4VC39 106 aa11.34□□□□□ -0.59
GPC1-201ENST00000264039 BBC3Q96PG8 261 aaPredicted RBP11.33□□□□□ -0.6
GPC1-201ENST00000264039 REG3AQ06141 175 aa11.33□□□□□ -0.6
GPC1-201ENST00000264039 LINC01006Q8NI28 216 aa11.33□□□□□ -0.6
GPC1-201ENST00000264039 ZNF702PQ9H963 129 aa11.33□□□□□ -0.6
GPC1-201ENST00000264039 COX7BP24311 80 aa11.31□□□□□ -0.6
GPC1-201ENST00000264039 UNC79Q9P2D8 2635 aa11.31□□□□□ -0.6
GPC1-201ENST00000264039 LINC00575Q6W349 94 aa11.31□□□□□ -0.6
GPC1-201ENST00000264039 FAM19A3Q7Z5A8 133 aa11.31□□□□□ -0.6
GPC1-201ENST00000264039 TRBV10-3A0A0K0K1G6 114 aa11.3□□□□□ -0.6
GPC1-201ENST00000264039 SPTSSBQ8NFR3 76 aa11.3□□□□□ -0.6
GPC1-201ENST00000264039 HIGD2AQ9BW72 106 aa11.3□□□□□ -0.6
GPC1-201ENST00000264039 MUC7Q8TAX7 377 aa11.29□□□□□ -0.6
GPC1-201ENST00000264039 Q6ZQT0 140 aa11.29□□□□□ -0.6
GPC1-201ENST00000264039 Q8IZM0 81 aa11.29□□□□□ -0.6
GPC1-201ENST00000264039 NDUFC1O43677 76 aa11.29□□□□□ -0.6
GPC1-201ENST00000264039 PDE6GP18545 87 aa11.27□□□□□ -0.61
GPC1-201ENST00000264039 SPATA3Q8NHX4 192 aa11.27□□□□□ -0.61
GPC1-201ENST00000264039 CAMK2N2Q96S95 79 aa11.27□□□□□ -0.61
GPC1-201ENST00000264039 C4orf3Q8WVX3 66 aa11.27□□□□□ -0.61
GPC1-201ENST00000264039 CFAP46Q8IYW2 2715 aa11.27□□□□□ -0.61
GPC1-201ENST00000264039 APCP25054 2843 aa11.26□□□□□ -0.61
GPC1-201ENST00000264039 CYSRT1A8MQ03 144 aa11.26□□□□□ -0.61
GPC1-201ENST00000264039 PRYO14603 147 aa11.25□□□□□ -0.61
GPC1-201ENST00000264039 LYPD5Q6UWN5 251 aa11.25□□□□□ -0.61
GPC1-201ENST00000264039 USP24Q9UPU5 2620 aa11.25□□□□□ -0.61
GPC1-201ENST00000264039 C10orf25Q5T742 122 aa11.25□□□□□ -0.61
GPC1-201ENST00000264039 PRO0255Q9UI72 69 aa11.24□□□□□ -0.61
GPC1-201ENST00000264039 DEFB135Q30KP9 77 aa11.24□□□□□ -0.61
GPC1-201ENST00000264039 CD164L2Q6UWJ8 174 aa11.24□□□□□ -0.61
GPC1-201ENST00000264039 FP248Q71RG6 208 aaPredicted RBP11.23□□□□□ -0.61
GPC1-201ENST00000264039 ESRGQ1W209 222 aa11.23□□□□□ -0.61
GPC1-201ENST00000264039 ZNF73O43830 326 aaPredicted RBP11.23□□□□□ -0.61
GPC1-201ENST00000264039 FLNAP21333 2647 aaKnown RBP11.22□□□□□ -0.61
GPC1-201ENST00000264039 NKAPP1Q8N9T2 125 aa11.22□□□□□ -0.61
GPC1-201ENST00000264039 OBSCN-AS1Q96MR7 158 aa11.21□□□□□ -0.61
GPC1-201ENST00000264039 Q6YL49 198 aa11.21□□□□□ -0.61
GPC1-201ENST00000264039 KLKP1Q107X0 134 aa11.21□□□□□ -0.62
GPC1-201ENST00000264039 A0A096LNT2 108 aa11.2□□□□□ -0.62
GPC1-201ENST00000264039 LINC00482Q8N8I6 264 aa11.2□□□□□ -0.62
GPC1-201ENST00000264039 DSCR9P59020 149 aa11.19□□□□□ -0.62
GPC1-201ENST00000264039 UTP20O75691 2785 aaKnown RBP11.19□□□□□ -0.62
GPC1-201ENST00000264039 IL17DQ8TAD2 202 aa11.18□□□□□ -0.62
GPC1-201ENST00000264039 DEFB116Q30KQ4 102 aa11.18□□□□□ -0.62
GPC1-201ENST00000264039 ATP5EP56381 51 aaPredicted RBP11.17□□□□□ -0.62
GPC1-201ENST00000264039 CSMD2Q7Z408 3487 aa11.17□□□□□ -0.62
GPC1-201ENST00000264039 CMC4P56277 68 aaPredicted RBP11.17□□□□□ -0.62
GPC1-201ENST00000264039 NIPBLQ6KC79 2804 aaeCLIP11.16□□□□□ -0.62
GPC1-201ENST00000264039 PMAIP1Q13794 54 aa11.16□□□□□ -0.62
GPC1-201ENST00000264039 FAM229BQ4G0N7 80 aa11.16□□□□□ -0.62
GPC1-201ENST00000264039 RETNQ9HD89 108 aa11.16□□□□□ -0.62
GPC1-201ENST00000264039 CXCL6P80162 114 aa11.15□□□□□ -0.62
GPC1-201ENST00000264039 WFDC13Q8IUB5 93 aa11.15□□□□□ -0.62
GPC1-201ENST00000264039 CELSR2Q9HCU4 2923 aa11.13□□□□□ -0.63
GPC1-201ENST00000264039 LY6G6DO95868 133 aa11.13□□□□□ -0.63
GPC1-201ENST00000264039 IGKV2D-24A0A075B6R9 120 aa11.13□□□□□ -0.63
GPC1-201ENST00000264039 COX17Q14061 63 aa11.13□□□□□ -0.63
GPC1-201ENST00000264039 SMIM29Q86T20 159 aa11.13□□□□□ -0.63
GPC1-201ENST00000264039 MXRA5Q9NR99 2828 aa11.13□□□□□ -0.63
GPC1-201ENST00000264039 A0A0J9YWU9 116 aa11.12□□□□□ -0.63
GPC1-201ENST00000264039 WFDC10BQ8IUB3 73 aa11.12□□□□□ -0.63
GPC1-201ENST00000264039 UBE2BP63146 152 aa11.11□□□□□ -0.63
GPC1-201ENST00000264039 ITPR3Q14573 2671 aa11.11□□□□□ -0.63
GPC1-201ENST00000264039 RPL37AP8A6NKH3 93 aa11.1□□□□□ -0.63
GPC1-201ENST00000264039 SETXQ7Z333 2677 aaKnown RBP11.09□□□□□ -0.63
GPC1-201ENST00000264039 ATRQ13535 2644 aa11.09□□□□□ -0.63
GPC1-201ENST00000264039 CHKB-CPT1BH3BT56 60 aa11.09□□□□□ -0.63
GPC1-201ENST00000264039 Q8NDZ9 215 aa11.08□□□□□ -0.64
GPC1-201ENST00000264039 LOC110117498A0A087WWA1 95 aa11.08□□□□□ -0.64
GPC1-201ENST00000264039 ETDCA0A1B0GVM5 59 aa11.08□□□□□ -0.64
GPC1-201ENST00000264039 DNAJC9-AS1A6NH13 148 aa11.07□□□□□ -0.64
GPC1-201ENST00000264039 IGHV4-31P0DP07 118 aa11.07□□□□□ -0.64
GPC1-201ENST00000264039 BAHCC1Q9P281 2608 aa11.06□□□□□ -0.64
GPC1-201ENST00000264039 MP68P56378 58 aa11.06□□□□□ -0.64
GPC1-201ENST00000264039 MRPL55Q7Z7F7 128 aaKnown RBP11.06□□□□□ -0.64
GPC1-201ENST00000264039 A0A1B0GUV1 79 aa11.04□□□□□ -0.64
GPC1-201ENST00000264039 F8WDY8 70 aa11.04□□□□□ -0.64
GPC1-201ENST00000264039 A0A096LNI7 61 aa11.04□□□□□ -0.64
GPC1-201ENST00000264039 KIAA0087Q14695 138 aa11.03□□□□□ -0.64
GPC1-201ENST00000264039 H3BQ85 93 aa11.03□□□□□ -0.64
GPC1-201ENST00000264039 TRBV7-4A0A0J9YYF1 115 aa11.02□□□□□ -0.64
GPC1-201ENST00000264039 BCE1O60756 84 aa11.02□□□□□ -0.65
GPC1-201ENST00000264039 LINC00208Q96KT6 92 aa11.02□□□□□ -0.65
GPC1-201ENST00000264039 A8MUN3 132 aa11□□□□□ -0.65
GPC1-201ENST00000264039 KRTAP10-9P60411 292 aa11□□□□□ -0.65
GPC1-201ENST00000264039 GIG44P09565 113 aaPredicted RBP11□□□□□ -0.65
GPC1-201ENST00000264039 UBR5O95071 2799 aaPredicted RBP11□□□□□ -0.65
GPC1-201ENST00000264039 PLAC8L1A1L4L8 177 aa11□□□□□ -0.65
GPC1-201ENST00000264039 LINC00167Q96N53 147 aa11□□□□□ -0.65
GPC1-201ENST00000264039 TEP1Q99973 2627 aaKnown RBP11□□□□□ -0.65
GPC1-201ENST00000264039 C6orf48Q9UBA6 75 aa10.99□□□□□ -0.65
GPC1-201ENST00000264039 M0R378 163 aa10.99□□□□□ -0.65
GPC1-201ENST00000264039 A6NED7 52 aa10.99□□□□□ -0.65
GPC1-201ENST00000264039 C1orf64Q8NEQ6 169 aa10.98□□□□□ -0.65
GPC1-201ENST00000264039 C1orf137Q5JT78 98 aa10.98□□□□□ -0.65
GPC1-201ENST00000264039 PRR15LQ9BU68 103 aa10.97□□□□□ -0.65
GPC1-201ENST00000264039 ZFHX3Q15911 3703 aa10.97□□□□□ -0.65
GPC1-201ENST00000264039 C16orf95Q9H693 158 aa10.97□□□□□ -0.65
GPC1-201ENST00000264039 SPART-AS1P0CW21 52 aa10.96□□□□□ -0.65
GPC1-201ENST00000264039 IGKV4-1P06312 121 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms