RNA–Protein interactions for RNA: ENST00000248139.7

RAB40C-201, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB40C, Length 2,699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-201ENST00000248139 RPL18AQ02543 176 aaKnown RBP17.24■□□□□ 0.35
RAB40C-201ENST00000248139 XAGE1AQ9HD64 81 aa17.24■□□□□ 0.35
RAB40C-201ENST00000248139 LYPD5Q6UWN5 251 aa17.22■□□□□ 0.35
RAB40C-201ENST00000248139 A0A087WVE0 104 aa17.21■□□□□ 0.35
RAB40C-201ENST00000248139 STAB1Q9NY15 2570 aa17.2■□□□□ 0.34
RAB40C-201ENST00000248139 WFDC10BQ8IUB3 73 aa17.2■□□□□ 0.34
RAB40C-201ENST00000248139 PRR34Q9NV39 138 aa17.19■□□□□ 0.34
RAB40C-201ENST00000248139 HIGD2BQ4VC39 106 aa17.19■□□□□ 0.34
RAB40C-201ENST00000248139 LINC00167Q96N53 147 aa17.18■□□□□ 0.34
RAB40C-201ENST00000248139 F8P00451 2351 aa17.16■□□□□ 0.34
RAB40C-201ENST00000248139 WFDC9Q8NEX5 89 aa17.16■□□□□ 0.34
RAB40C-201ENST00000248139 C6orf48Q9UBA6 75 aa17.16■□□□□ 0.34
RAB40C-201ENST00000248139 CCKP06307 115 aa17.14■□□□□ 0.33
RAB40C-201ENST00000248139 A0A0J9YWU9 116 aa17.13■□□□□ 0.33
RAB40C-201ENST00000248139 TMEM256-PLSCR3K7ERE1 68 aa17.13■□□□□ 0.33
RAB40C-201ENST00000248139 LINC00575Q6W349 94 aa17.13■□□□□ 0.33
RAB40C-201ENST00000248139 Q6ZTC4 211 aa17.12■□□□□ 0.33
RAB40C-201ENST00000248139 KRTAP10-11P60412 298 aa17.12■□□□□ 0.33
RAB40C-201ENST00000248139 KPRPQ5T749 579 aaPredicted RBP17.11■□□□□ 0.33
RAB40C-201ENST00000248139 FBN1P35555 2871 aaKnown RBP17.11■□□□□ 0.33
RAB40C-201ENST00000248139 TRBV10-3A0A0K0K1G6 114 aa17.1■□□□□ 0.33
RAB40C-201ENST00000248139 FLNBO75369 2602 aaKnown RBP17.1■□□□□ 0.33
RAB40C-201ENST00000248139 NOTCH1P46531 2555 aa17.09■□□□□ 0.33
RAB40C-201ENST00000248139 A0A1B0GX51 115 aa17.08■□□□□ 0.33
RAB40C-201ENST00000248139 hADV29S1A0JD25 119 aa17.08■□□□□ 0.33
RAB40C-201ENST00000248139 MAST4O15021 2626 aa17.07■□□□□ 0.32
RAB40C-201ENST00000248139 JMJD7-PLA2G4BH0Y9G9 81 aa17.07■□□□□ 0.32
RAB40C-201ENST00000248139 IGLV6-57P01721 117 aa17.07■□□□□ 0.32
RAB40C-201ENST00000248139 Q6JHZ5 121 aa17.07■□□□□ 0.32
RAB40C-201ENST00000248139 M0R2N4 97 aa17.06■□□□□ 0.32
RAB40C-201ENST00000248139 C9orf153Q5TBE3 101 aa17.06■□□□□ 0.32
RAB40C-201ENST00000248139 HIST1H4AP62805 103 aaKnown RBP17.06■□□□□ 0.32
RAB40C-201ENST00000248139 Q6ZQY7 126 aa17.05■□□□□ 0.32
RAB40C-201ENST00000248139 C3orf22Q8N5N4 141 aa17.05■□□□□ 0.32
RAB40C-201ENST00000248139 LAMTOR3Q9UHA4 124 aa17.04■□□□□ 0.32
RAB40C-201ENST00000248139 ZNF561-AS1K7EIQ3 104 aa17.03■□□□□ 0.32
RAB40C-201ENST00000248139 CAMK2N2Q96S95 79 aa17.03■□□□□ 0.32
RAB40C-201ENST00000248139 CMYA5Q8N3K9 4069 aa17.03■□□□□ 0.32
RAB40C-201ENST00000248139 SMIM20Q8N5G0 67 aa17.02■□□□□ 0.32
RAB40C-201ENST00000248139 ESRGQ1W209 222 aa17.01■□□□□ 0.31
RAB40C-201ENST00000248139 C2orf48Q96LS8 159 aa17.01■□□□□ 0.31
RAB40C-201ENST00000248139 Q6ZRU5 148 aa17■□□□□ 0.31
RAB40C-201ENST00000248139 WIPF1O43516 503 aa17■□□□□ 0.31
RAB40C-201ENST00000248139 TRAV23DV6A0A075B6W5 121 aa16.99■□□□□ 0.31
RAB40C-201ENST00000248139 UQCRQO14949 82 aa16.99■□□□□ 0.31
RAB40C-201ENST00000248139 KRTAP26-1Q6PEX3 210 aa16.98■□□□□ 0.31
RAB40C-201ENST00000248139 FAM19A1Q7Z5A9 133 aa16.98■□□□□ 0.31
RAB40C-201ENST00000248139 GVQW2A0A096LPI5 108 aaPredicted RBP16.98■□□□□ 0.31
RAB40C-201ENST00000248139 RBM3P98179 157 aaKnown RBP16.97■□□□□ 0.31
RAB40C-201ENST00000248139 COX7CP15954 63 aa16.96■□□□□ 0.31
RAB40C-201ENST00000248139 CYSTM1Q9H1C7 97 aa16.96■□□□□ 0.31
RAB40C-201ENST00000248139 C15orf56Q8N910 161 aa16.96■□□□□ 0.31
RAB40C-201ENST00000248139 ATOX1O00244 68 aa16.94■□□□□ 0.3
RAB40C-201ENST00000248139 DIRC1Q969H9 104 aa16.94■□□□□ 0.3
RAB40C-201ENST00000248139 USP17L23D6RBM5 183 aa16.93■□□□□ 0.3
RAB40C-201ENST00000248139 ZNF73O43830 326 aaPredicted RBP16.93■□□□□ 0.3
RAB40C-201ENST00000248139 Q6ZQT0 140 aa16.93■□□□□ 0.3
RAB40C-201ENST00000248139 IGKV2D-24A0A075B6R9 120 aa16.92■□□□□ 0.3
RAB40C-201ENST00000248139 VPREB1P12018 145 aa16.91■□□□□ 0.3
RAB40C-201ENST00000248139 MUC7Q8TAX7 377 aa16.9■□□□□ 0.3
RAB40C-201ENST00000248139 UBL5Q9BZL1 73 aa16.88■□□□□ 0.29
RAB40C-201ENST00000248139 Q6ZRP5 223 aa16.88■□□□□ 0.29
RAB40C-201ENST00000248139 COX7BP24311 80 aa16.87■□□□□ 0.29
RAB40C-201ENST00000248139 DEFB131BA0A096LNP1 70 aa16.87■□□□□ 0.29
RAB40C-201ENST00000248139 C1orf43Q9BWL3 253 aa16.87■□□□□ 0.29
RAB40C-201ENST00000248139 PRB2P02812 416 aaPredicted RBP16.86■□□□□ 0.29
RAB40C-201ENST00000248139 KRTAP24-1Q3LI83 254 aa16.86■□□□□ 0.29
RAB40C-201ENST00000248139 DSCR8Q96T75 97 aa16.85■□□□□ 0.29
RAB40C-201ENST00000248139 EGFEM1PQ0D2K5 195 aa16.84■□□□□ 0.29
RAB40C-201ENST00000248139 NDUFC2-KCTD14E9PQ53 114 aa16.83■□□□□ 0.29
RAB40C-201ENST00000248139 NBEAL1Q6ZS30 2694 aa16.83■□□□□ 0.29
RAB40C-201ENST00000248139 H3BNG1 76 aa16.83■□□□□ 0.28
RAB40C-201ENST00000248139 HAMPP81172 84 aa16.83■□□□□ 0.28
RAB40C-201ENST00000248139 ELOF1P60002 83 aaKnown RBP16.82■□□□□ 0.28
RAB40C-201ENST00000248139 C11orf45Q8TAV5 145 aa16.82■□□□□ 0.28
RAB40C-201ENST00000248139 LOC110117498A0A087WWA1 95 aa16.81■□□□□ 0.28
RAB40C-201ENST00000248139 SERP2Q8N6R1 65 aa16.81■□□□□ 0.28
RAB40C-201ENST00000248139 UPK3BQ9BT76 320 aa16.81■□□□□ 0.28
RAB40C-201ENST00000248139 COL6A5A8TX70 2615 aa16.8■□□□□ 0.28
RAB40C-201ENST00000248139 M0R378 163 aa16.79■□□□□ 0.28
RAB40C-201ENST00000248139 CRYGAP11844 174 aa16.79■□□□□ 0.28
RAB40C-201ENST00000248139 GHRHP01286 108 aa16.78■□□□□ 0.28
RAB40C-201ENST00000248139 Q6ZVQ6 151 aa16.78■□□□□ 0.28
RAB40C-201ENST00000248139 SCXQ7RTU7 201 aa16.77■□□□□ 0.27
RAB40C-201ENST00000248139 BAHCC1Q9P281 2608 aa16.76■□□□□ 0.27
RAB40C-201ENST00000248139 LINC01556Q5JQF7 62 aa16.75■□□□□ 0.27
RAB40C-201ENST00000248139 LINC01547P58512 204 aaPredicted RBP16.75■□□□□ 0.27
RAB40C-201ENST00000248139 SYCNQ0VAF6 134 aa16.75■□□□□ 0.27
RAB40C-201ENST00000248139 CASC10Q5T4H9 136 aa16.75■□□□□ 0.27
RAB40C-201ENST00000248139 SERTAD4-AS1Q5TG53 156 aa16.75■□□□□ 0.27
RAB40C-201ENST00000248139 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP16.75■□□□□ 0.27
RAB40C-201ENST00000248139 ATP5EP2Q5VTU8 51 aa16.73■□□□□ 0.27
RAB40C-201ENST00000248139 DNAH3Q8TD57 4116 aa16.73■□□□□ 0.27
RAB40C-201ENST00000248139 LOC107984640A0A0U1RRK4 108 aa16.73■□□□□ 0.27
RAB40C-201ENST00000248139 LINC00528Q8N1L1 170 aa16.73■□□□□ 0.27
RAB40C-201ENST00000248139 DEFB105AQ8NG35 78 aa16.7■□□□□ 0.26
RAB40C-201ENST00000248139 LYSTQ99698 3801 aa16.69■□□□□ 0.26
RAB40C-201ENST00000248139 TRBV7-4A0A0J9YYF1 115 aa16.69■□□□□ 0.26
RAB40C-201ENST00000248139 MRAPQ8TCY5 172 aa16.69■□□□□ 0.26
RAB40C-201ENST00000248139 FAM168BA1KXE4 195 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 249.3 ms