RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 FAM236DA0A1B0GTK5 79 aa7.86□□□□□ -1.15
CLN3-244ENST00000636147 FAM236CP0DP71 79 aa7.86□□□□□ -1.15
CLN3-244ENST00000636147 C1orf158Q8N1D5 194 aa7.86□□□□□ -1.15
CLN3-244ENST00000636147 RELNP78509 3460 aa7.85□□□□□ -1.15
CLN3-244ENST00000636147 CMC4P56277 68 aaPredicted RBP7.85□□□□□ -1.15
CLN3-244ENST00000636147 C9orf116Q5BN46 136 aaPredicted RBP7.85□□□□□ -1.15
CLN3-244ENST00000636147 PRB2P02812 416 aaPredicted RBP7.85□□□□□ -1.15
CLN3-244ENST00000636147 KLK9Q2XQG4 91 aa7.85□□□□□ -1.15
CLN3-244ENST00000636147 C4orf3Q8WVX3 66 aa7.85□□□□□ -1.15
CLN3-244ENST00000636147 ITPR1Q14643 2758 aa7.84□□□□□ -1.15
CLN3-244ENST00000636147 DEFB121Q5J5C9 76 aa7.84□□□□□ -1.15
CLN3-244ENST00000636147 DEFB105AQ8NG35 78 aa7.84□□□□□ -1.15
CLN3-244ENST00000636147 A8MTW9 85 aa7.84□□□□□ -1.15
CLN3-244ENST00000636147 C11orf72Q8NBR9 251 aa7.84□□□□□ -1.15
CLN3-244ENST00000636147 PKIGQ9Y2B9 76 aa7.84□□□□□ -1.15
CLN3-244ENST00000636147 IGHV4-28A0A0C4DH34 117 aa7.83□□□□□ -1.16
CLN3-244ENST00000636147 LINC00959A0A1B0GUT2 108 aa7.83□□□□□ -1.16
CLN3-244ENST00000636147 XAGE1AQ9HD64 81 aa7.83□□□□□ -1.16
CLN3-244ENST00000636147 TRBV6-4A0A1B0GX49 114 aa7.83□□□□□ -1.16
CLN3-244ENST00000636147 CCKP06307 115 aa7.83□□□□□ -1.16
CLN3-244ENST00000636147 BEAN1Q3B7T3 259 aa7.83□□□□□ -1.16
CLN3-244ENST00000636147 Q6YL49 198 aa7.83□□□□□ -1.16
CLN3-244ENST00000636147 IGLV5-45A0A087WSX0 123 aa7.82□□□□□ -1.16
CLN3-244ENST00000636147 CRYGAP11844 174 aa7.82□□□□□ -1.16
CLN3-244ENST00000636147 SPAG11BQ08648 103 aa7.82□□□□□ -1.16
CLN3-244ENST00000636147 PRORYQ9H606 182 aa7.82□□□□□ -1.16
CLN3-244ENST00000636147 ZNF561-AS1K7EIQ3 104 aa7.82□□□□□ -1.16
CLN3-244ENST00000636147 C4orf26Q17RF5 130 aa7.82□□□□□ -1.16
CLN3-244ENST00000636147 Q6ZQY7 126 aa7.82□□□□□ -1.16
CLN3-244ENST00000636147 C9orf129Q5T035 196 aaKnown RBP7.81□□□□□ -1.16
CLN3-244ENST00000636147 MPLKIPQ8TAP9 179 aa7.81□□□□□ -1.16
CLN3-244ENST00000636147 BRK1Q8WUW1 75 aa7.81□□□□□ -1.16
CLN3-244ENST00000636147 NBEAL2Q6ZNJ1 2754 aa7.81□□□□□ -1.16
CLN3-244ENST00000636147 IGKV2-28A0A075B6P5 120 aa7.81□□□□□ -1.16
CLN3-244ENST00000636147 IGKV2D-28P01615 120 aa7.81□□□□□ -1.16
CLN3-244ENST00000636147 KLK12Q9UKR0 248 aa7.81□□□□□ -1.16
CLN3-244ENST00000636147 CHCHD10Q8WYQ3 142 aaPredicted RBP7.81□□□□□ -1.16
CLN3-244ENST00000636147 A0A0U1RQV1 116 aa7.8□□□□□ -1.16
CLN3-244ENST00000636147 DPH3Q96FX2 82 aa7.8□□□□□ -1.16
CLN3-244ENST00000636147 NDUFC2O95298 119 aa7.8□□□□□ -1.16
CLN3-244ENST00000636147 Q8N814 137 aa7.8□□□□□ -1.16
CLN3-244ENST00000636147 GCN1Q92616 2671 aaKnown RBP7.79□□□□□ -1.16
CLN3-244ENST00000636147 A0A087WZ39 114 aa7.79□□□□□ -1.16
CLN3-244ENST00000636147 ATP5EP2Q5VTU8 51 aa7.78□□□□□ -1.16
CLN3-244ENST00000636147 BBC3Q96PG8 261 aaPredicted RBP7.78□□□□□ -1.16
CLN3-244ENST00000636147 REG3AQ06141 175 aa7.78□□□□□ -1.16
CLN3-244ENST00000636147 FAM104AQ969W3 186 aa7.78□□□□□ -1.16
CLN3-244ENST00000636147 PRO0255Q9UI72 69 aa7.78□□□□□ -1.16
CLN3-244ENST00000636147 F8WEM9 126 aa7.77□□□□□ -1.17
CLN3-244ENST00000636147 DEFB135Q30KP9 77 aa7.77□□□□□ -1.17
CLN3-244ENST00000636147 DCHS2Q6V1P9 2916 aa7.77□□□□□ -1.17
CLN3-244ENST00000636147 IGHV3OR16-9A0A0B4J2B5 98 aa7.77□□□□□ -1.17
CLN3-244ENST00000636147 NREPQ16612 68 aa7.77□□□□□ -1.17
CLN3-244ENST00000636147 DIRC1Q969H9 104 aa7.77□□□□□ -1.17
CLN3-244ENST00000636147 SVEP1Q4LDE5 3571 aa7.76□□□□□ -1.17
CLN3-244ENST00000636147 LINC01561Q8N1V8 128 aa7.76□□□□□ -1.17
CLN3-244ENST00000636147 HECTD1Q9ULT8 2610 aa7.76□□□□□ -1.17
CLN3-244ENST00000636147 FLNCQ14315 2725 aa7.76□□□□□ -1.17
CLN3-244ENST00000636147 IGHV4-31P0DP07 118 aa7.76□□□□□ -1.17
CLN3-244ENST00000636147 HIGD2BQ4VC39 106 aa7.76□□□□□ -1.17
CLN3-244ENST00000636147 SPENQ96T58 3664 aaKnown RBP7.76□□□□□ -1.17
CLN3-244ENST00000636147 CAMK2N2Q96S95 79 aa7.75□□□□□ -1.17
CLN3-244ENST00000636147 ZANQ9Y493 2812 aa7.75□□□□□ -1.17
CLN3-244ENST00000636147 UNQ6190/PRO20217Q6UXQ8 127 aa7.75□□□□□ -1.17
CLN3-244ENST00000636147 RMI2Q96E14 147 aa7.75□□□□□ -1.17
CLN3-244ENST00000636147 DNAJC9-AS1A6NH13 148 aa7.74□□□□□ -1.17
CLN3-244ENST00000636147 ZNF843Q8N446 348 aa7.74□□□□□ -1.17
CLN3-244ENST00000636147 FHL2Q14192 279 aa7.74□□□□□ -1.17
CLN3-244ENST00000636147 Q8IZM0 81 aa7.73□□□□□ -1.17
CLN3-244ENST00000636147 Q8N3U1 123 aa7.73□□□□□ -1.17
CLN3-244ENST00000636147 FLNAP21333 2647 aaKnown RBP7.73□□□□□ -1.17
CLN3-244ENST00000636147 C3orf84H3BNL1 204 aa7.73□□□□□ -1.17
CLN3-244ENST00000636147 COX7BP24311 80 aa7.73□□□□□ -1.17
CLN3-244ENST00000636147 LINC00482Q8N8I6 264 aa7.73□□□□□ -1.17
CLN3-244ENST00000636147 NKAPP1Q8N9T2 125 aa7.72□□□□□ -1.17
CLN3-244ENST00000636147 USP24Q9UPU5 2620 aa7.72□□□□□ -1.17
CLN3-244ENST00000636147 RPS28P62857 69 aaKnown RBP7.72□□□□□ -1.17
CLN3-244ENST00000636147 DEFB113Q30KQ7 82 aa7.72□□□□□ -1.17
CLN3-244ENST00000636147 C6orf223Q8N319 242 aa7.72□□□□□ -1.17
CLN3-244ENST00000636147 HRNRQ86YZ3 2850 aaPredicted RBP7.72□□□□□ -1.17
CLN3-244ENST00000636147 TRAV7A0A075B6U4 112 aa7.72□□□□□ -1.17
CLN3-244ENST00000636147 CD164L2Q6UWJ8 174 aa7.72□□□□□ -1.17
CLN3-244ENST00000636147 LINC01006Q8NI28 216 aa7.71□□□□□ -1.17
CLN3-244ENST00000636147 CYSTM1Q9H1C7 97 aa7.71□□□□□ -1.18
CLN3-244ENST00000636147 LINC01600Q96MT4 127 aa7.7□□□□□ -1.18
CLN3-244ENST00000636147 TEX15Q9BXT5 2789 aa7.7□□□□□ -1.18
CLN3-244ENST00000636147 PDE6GP18545 87 aa7.7□□□□□ -1.18
CLN3-244ENST00000636147 Q6ZVQ6 151 aa7.7□□□□□ -1.18
CLN3-244ENST00000636147 C2orf48Q96LS8 159 aa7.7□□□□□ -1.18
CLN3-244ENST00000636147 Q8N9L7 120 aa7.7□□□□□ -1.18
CLN3-244ENST00000636147 LRCOL1A6NCL2 159 aa7.69□□□□□ -1.18
CLN3-244ENST00000636147 CYSRT1A8MQ03 144 aa7.69□□□□□ -1.18
CLN3-244ENST00000636147 BPY2O14599 106 aa7.69□□□□□ -1.18
CLN3-244ENST00000636147 LINC01547P58512 204 aaPredicted RBP7.69□□□□□ -1.18
CLN3-244ENST00000636147 KRTAP10-9P60411 292 aa7.69□□□□□ -1.18
CLN3-244ENST00000636147 IGKV2D-24A0A075B6R9 120 aa7.69□□□□□ -1.18
CLN3-244ENST00000636147 TRBV10-3A0A0K0K1G6 114 aa7.68□□□□□ -1.18
CLN3-244ENST00000636147 PRR4Q16378 134 aa7.68□□□□□ -1.18
CLN3-244ENST00000636147 SERP1Q9Y6X1 66 aa7.68□□□□□ -1.18
CLN3-244ENST00000636147 CUBNO60494 3623 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms