RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 A0A0J9YXY3 114 aa6.75□□□□□ -1.33
UPF1-213ENST00000601981 GCSHP23434 173 aa6.75□□□□□ -1.33
UPF1-213ENST00000601981 REG3AQ06141 175 aa6.75□□□□□ -1.33
UPF1-213ENST00000601981 PRR34Q9NV39 138 aa6.75□□□□□ -1.33
UPF1-213ENST00000601981 HERC2O95714 4834 aa6.74□□□□□ -1.33
UPF1-213ENST00000601981 TRAV8-4A0A0B4J246 113 aa6.74□□□□□ -1.33
UPF1-213ENST00000601981 TMEM238C9JI98 176 aa6.74□□□□□ -1.33
UPF1-213ENST00000601981 RTL8CO15255 209 aa6.74□□□□□ -1.33
UPF1-213ENST00000601981 TIMM17BO60830 172 aa6.74□□□□□ -1.33
UPF1-213ENST00000601981 FXYD2P54710 66 aa6.74□□□□□ -1.33
UPF1-213ENST00000601981 CLPSL2Q6UWE3 100 aa6.74□□□□□ -1.33
UPF1-213ENST00000601981 CD164L2Q6UWJ8 174 aa6.74□□□□□ -1.33
UPF1-213ENST00000601981 XCL1P47992 114 aa6.73□□□□□ -1.33
UPF1-213ENST00000601981 SRSF9Q13242 221 aaKnown RBP eCLIP6.73□□□□□ -1.33
UPF1-213ENST00000601981 RYR1P21817 5038 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 A0A1B0GV90 55 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 TMEM238LA0A1B0GVL6 79 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 A6NJY4 79 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 PTTG1IPP53801 180 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 HERV-K104P63124 156 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 SFTA2Q6UW10 78 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 ENHOQ6UWT2 76 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 Q6ZRN7 208 aaPredicted RBP6.72□□□□□ -1.33
UPF1-213ENST00000601981 C5orf38Q86SI9 138 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 COX7B2Q8TF08 81 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 CHCHD10Q8WYQ3 142 aaPredicted RBP6.72□□□□□ -1.33
UPF1-213ENST00000601981 ZNF625Q96I27 306 aaPredicted RBP6.72□□□□□ -1.33
UPF1-213ENST00000601981 SPANXDQ9BXN6 97 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 SPANXCQ9NY87 97 aa6.72□□□□□ -1.33
UPF1-213ENST00000601981 PCLOQ9Y6V0 5065 aa6.71□□□□□ -1.33
UPF1-213ENST00000601981 A0A1B0GWB2 263 aa6.71□□□□□ -1.34
UPF1-213ENST00000601981 COX7A2LO14548 114 aa6.71□□□□□ -1.34
UPF1-213ENST00000601981 TAX1BP3O14907 124 aa6.71□□□□□ -1.34
UPF1-213ENST00000601981 Q6ZVH6 145 aa6.71□□□□□ -1.34
UPF1-213ENST00000601981 LITAFQ99732 161 aa6.71□□□□□ -1.34
UPF1-213ENST00000601981 DNAH10Q8IVF4 4471 aa6.7□□□□□ -1.34
UPF1-213ENST00000601981 SMIM13P0DJ93 91 aa6.7□□□□□ -1.34
UPF1-213ENST00000601981 TNP2Q05952 138 aa6.7□□□□□ -1.34
UPF1-213ENST00000601981 FOXI1Q12951 378 aa6.7□□□□□ -1.34
UPF1-213ENST00000601981 DNAH2Q9P225 4427 aa6.69□□□□□ -1.34
UPF1-213ENST00000601981 IGLV10-54A0A075B6I4 117 aa6.69□□□□□ -1.34
UPF1-213ENST00000601981 CIRBPQ14011 172 aaKnown RBP6.69□□□□□ -1.34
UPF1-213ENST00000601981 C14orf177Q52M58 125 aa6.69□□□□□ -1.34
UPF1-213ENST00000601981 Q8IZM0 81 aa6.69□□□□□ -1.34
UPF1-213ENST00000601981 NHP2Q9NX24 153 aaKnown RBP6.69□□□□□ -1.34
UPF1-213ENST00000601981 TOMM7Q9P0U1 55 aa6.69□□□□□ -1.34
UPF1-213ENST00000601981 DNAH17Q9UFH2 4485 aa6.68□□□□□ -1.34
UPF1-213ENST00000601981 GAGE12HA6NDE8 117 aa6.68□□□□□ -1.34
UPF1-213ENST00000601981 IFITM1P13164 125 aa6.68□□□□□ -1.34
UPF1-213ENST00000601981 RPL24P83731 157 aaKnown RBP6.68□□□□□ -1.34
UPF1-213ENST00000601981 A0A087WTM6 91 aa6.67□□□□□ -1.34
UPF1-213ENST00000601981 APOMO95445 188 aa6.67□□□□□ -1.34
UPF1-213ENST00000601981 PRSS2P07478 247 aa6.67□□□□□ -1.34
UPF1-213ENST00000601981 MALP21145 153 aa6.67□□□□□ -1.34
UPF1-213ENST00000601981 CXCL5P42830 114 aa6.67□□□□□ -1.34
UPF1-213ENST00000601981 ADAMTSL4-AS1Q5T5F5 129 aa6.67□□□□□ -1.34
UPF1-213ENST00000601981 COPS9Q8WXC6 57 aa6.67□□□□□ -1.34
UPF1-213ENST00000601981 PPDPFQ9H3Y8 114 aa6.67□□□□□ -1.34
UPF1-213ENST00000601981 C9orf118A6NHY6 69 aa6.66□□□□□ -1.34
UPF1-213ENST00000601981 K7ERJ3 54 aa6.66□□□□□ -1.34
UPF1-213ENST00000601981 KIAA0087Q14695 138 aa6.66□□□□□ -1.34
UPF1-213ENST00000601981 C6orf226Q5I0X4 101 aa6.66□□□□□ -1.34
UPF1-213ENST00000601981 MEIG1Q5JSS6 88 aa6.66□□□□□ -1.34
UPF1-213ENST00000601981 CFAP161Q6P656 301 aa6.66□□□□□ -1.34
UPF1-213ENST00000601981 MUSTN1Q8IVN3 82 aa6.66□□□□□ -1.34
UPF1-213ENST00000601981 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.65□□□□□ -1.34
UPF1-213ENST00000601981 LRCOL1A6NCL2 159 aa6.65□□□□□ -1.34
UPF1-213ENST00000601981 KRTAP26-1Q6PEX3 210 aa6.65□□□□□ -1.34
UPF1-213ENST00000601981 Q8N814 137 aa6.65□□□□□ -1.34
UPF1-213ENST00000601981 NTN5Q8WTR8 489 aaPredicted RBP6.65□□□□□ -1.34
UPF1-213ENST00000601981 A0A0B4J2C4 111 aa6.64□□□□□ -1.35
UPF1-213ENST00000601981 A4D1N5 150 aa6.64□□□□□ -1.35
UPF1-213ENST00000601981 USP17L23D6RBM5 183 aa6.64□□□□□ -1.35
UPF1-213ENST00000601981 RAB37Q96AX2 223 aa6.64□□□□□ -1.35
UPF1-213ENST00000601981 PGPEP1Q9NXJ5 209 aa6.64□□□□□ -1.35
UPF1-213ENST00000601981 HECTD4Q9Y4D8 3996 aa6.64□□□□□ -1.35
UPF1-213ENST00000601981 A0A1B0GVY2 172 aa6.63□□□□□ -1.35
UPF1-213ENST00000601981 LECT2O14960 151 aa6.63□□□□□ -1.35
UPF1-213ENST00000601981 CFC1BP0CG36 223 aa6.63□□□□□ -1.35
UPF1-213ENST00000601981 CFC1P0CG37 223 aa6.63□□□□□ -1.35
UPF1-213ENST00000601981 CKS1BP61024 79 aa6.63□□□□□ -1.35
UPF1-213ENST00000601981 SPAG11BQ08648 103 aa6.63□□□□□ -1.35
UPF1-213ENST00000601981 LINC00308Q8TCZ7 52 aa6.63□□□□□ -1.35
UPF1-213ENST00000601981 IGLV5-52A0A0A0MRZ9 124 aa6.62□□□□□ -1.35
UPF1-213ENST00000601981 H3BUT2 72 aa6.62□□□□□ -1.35
UPF1-213ENST00000601981 DAND5Q8N907 189 aa6.62□□□□□ -1.35
UPF1-213ENST00000601981 ERG28Q9UKR5 140 aa6.62□□□□□ -1.35
UPF1-213ENST00000601981 FAT2Q9NYQ8 4349 aa6.62□□□□□ -1.35
UPF1-213ENST00000601981 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.61□□□□□ -1.35
UPF1-213ENST00000601981 A0A1W2PPM0 123 aa6.61□□□□□ -1.35
UPF1-213ENST00000601981 C16orf90A8MZG2 172 aa6.61□□□□□ -1.35
UPF1-213ENST00000601981 COX17Q14061 63 aa6.61□□□□□ -1.35
UPF1-213ENST00000601981 VAMP3Q15836 100 aa6.61□□□□□ -1.35
UPF1-213ENST00000601981 C2orf82Q6UX34 121 aa6.61□□□□□ -1.35
UPF1-213ENST00000601981 MIR7-3HGQ8N6C7 128 aa6.61□□□□□ -1.35
UPF1-213ENST00000601981 PRO1854Q9UHT4 67 aa6.61□□□□□ -1.35
UPF1-213ENST00000601981 A0A0U1RRA0 63 aa6.6□□□□□ -1.35
UPF1-213ENST00000601981 FABP2P12104 132 aa6.6□□□□□ -1.35
UPF1-213ENST00000601981 LINC00158P58513 81 aa6.6□□□□□ -1.35
UPF1-213ENST00000601981 NPC2P61916 151 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms