RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 ANKRD29Q8N6D5 301 aa8.11□□□□□ -1.11
VRK3-223ENST00000601341 ZNF625Q96I27 306 aaPredicted RBP8.11□□□□□ -1.11
VRK3-223ENST00000601341 DEFB131BA0A096LNP1 70 aa8.1□□□□□ -1.11
VRK3-223ENST00000601341 TRBV10-2A0A0K0K1G8 114 aa8.1□□□□□ -1.11
VRK3-223ENST00000601341 H3BNG1 76 aa8.1□□□□□ -1.11
VRK3-223ENST00000601341 RPL13AP40429 203 aaKnown RBP8.1□□□□□ -1.11
VRK3-223ENST00000601341 MRPL23Q16540 153 aaKnown RBP8.1□□□□□ -1.11
VRK3-223ENST00000601341 Q9H8V8 135 aa8.1□□□□□ -1.11
VRK3-223ENST00000601341 DNAH9Q9NYC9 4486 aa8.1□□□□□ -1.11
VRK3-223ENST00000601341 C9JAW5 83 aa8.1□□□□□ -1.11
VRK3-223ENST00000601341 H3BT86 120 aa8.1□□□□□ -1.11
VRK3-223ENST00000601341 CARD19Q96LW7 228 aa8.1□□□□□ -1.11
VRK3-223ENST00000601341 TRAV10A0A0B4J240 114 aa8.09□□□□□ -1.11
VRK3-223ENST00000601341 LINC00308Q8TCZ7 52 aa8.09□□□□□ -1.11
VRK3-223ENST00000601341 TRBV6-8A0A0A6YYG3 113 aa8.08□□□□□ -1.12
VRK3-223ENST00000601341 TRAV13-1A0A0B4J241 112 aa8.08□□□□□ -1.12
VRK3-223ENST00000601341 H7C2G1 150 aa8.07□□□□□ -1.12
VRK3-223ENST00000601341 LST1O00453 97 aa8.07□□□□□ -1.12
VRK3-223ENST00000601341 CDIP1Q9H305 208 aa8.07□□□□□ -1.12
VRK3-223ENST00000601341 A0A096LPF7 62 aa8.07□□□□□ -1.12
VRK3-223ENST00000601341 STAB2Q8WWQ8 2551 aa8.07□□□□□ -1.12
VRK3-223ENST00000601341 COL7A1Q02388 2944 aa8.05□□□□□ -1.12
VRK3-223ENST00000601341 PRKDCP78527 4128 aaKnown RBP8.05□□□□□ -1.12
VRK3-223ENST00000601341 A0A1B0GUV1 79 aa8.05□□□□□ -1.12
VRK3-223ENST00000601341 IGHV3OR16-9A0A0B4J2B5 98 aa8.04□□□□□ -1.12
VRK3-223ENST00000601341 MEIG1Q5JSS6 88 aa8.04□□□□□ -1.12
VRK3-223ENST00000601341 LINC01561Q8N1V8 128 aa8.04□□□□□ -1.12
VRK3-223ENST00000601341 A0A087WZ39 114 aa8.03□□□□□ -1.12
VRK3-223ENST00000601341 C15orf53Q8NAA6 179 aa8.03□□□□□ -1.12
VRK3-223ENST00000601341 COX7B2Q8TF08 81 aa8.03□□□□□ -1.12
VRK3-223ENST00000601341 CHCHD5Q9BSY4 110 aa8.03□□□□□ -1.12
VRK3-223ENST00000601341 TRAV13-2A0A0B4J235 113 aa8.02□□□□□ -1.13
VRK3-223ENST00000601341 COX7A2LO14548 114 aa8.02□□□□□ -1.13
VRK3-223ENST00000601341 FAM240AA0A1B0GVK7 77 aa8.02□□□□□ -1.13
VRK3-223ENST00000601341 IBA57-AS1B1ANH7 110 aa8.02□□□□□ -1.13
VRK3-223ENST00000601341 LYPD5Q6UWN5 251 aa8.02□□□□□ -1.13
VRK3-223ENST00000601341 C2orf82Q6UX34 121 aa8.02□□□□□ -1.13
VRK3-223ENST00000601341 UBE2WQ96B02 151 aa8.02□□□□□ -1.13
VRK3-223ENST00000601341 GAGE6Q13070 117 aa8.01□□□□□ -1.13
VRK3-223ENST00000601341 LELP1Q5T871 98 aa8.01□□□□□ -1.13
VRK3-223ENST00000601341 SOSTDC1Q6X4U4 206 aa8.01□□□□□ -1.13
VRK3-223ENST00000601341 DAND5Q8N907 189 aa8.01□□□□□ -1.13
VRK3-223ENST00000601341 NTN5Q8WTR8 489 aaPredicted RBP8.01□□□□□ -1.13
VRK3-223ENST00000601341 TRACP01848 142 aa8□□□□□ -1.13
VRK3-223ENST00000601341 NPC2P61916 151 aa8□□□□□ -1.13
VRK3-223ENST00000601341 IGLV4-60A0A075B6I1 120 aa7.99□□□□□ -1.13
VRK3-223ENST00000601341 A0A1B0GV72 72 aa7.99□□□□□ -1.13
VRK3-223ENST00000601341 XGP55808 180 aa7.99□□□□□ -1.13
VRK3-223ENST00000601341 LINC00959A0A1B0GUT2 108 aa7.98□□□□□ -1.13
VRK3-223ENST00000601341 RPL28P46779 137 aaKnown RBP7.98□□□□□ -1.13
VRK3-223ENST00000601341 ESRGQ1W209 222 aa7.98□□□□□ -1.13
VRK3-223ENST00000601341 CLEC2BQ92478 149 aa7.98□□□□□ -1.13
VRK3-223ENST00000601341 SS18Q15532 418 aa7.97□□□□□ -1.13
VRK3-223ENST00000601341 TEX49A0A1B0GTD5 131 aa7.97□□□□□ -1.13
VRK3-223ENST00000601341 NUPR2A6NF83 97 aa7.97□□□□□ -1.13
VRK3-223ENST00000601341 TRAV8-4A0A0B4J246 113 aa7.96□□□□□ -1.14
VRK3-223ENST00000601341 CRPP02741 224 aa7.96□□□□□ -1.14
VRK3-223ENST00000601341 MT-ATP8P03928 68 aa7.96□□□□□ -1.14
VRK3-223ENST00000601341 ACYP1P07311 99 aa7.96□□□□□ -1.14
VRK3-223ENST00000601341 Q6Q795 121 aa7.96□□□□□ -1.14
VRK3-223ENST00000601341 Q8IZM0 81 aa7.96□□□□□ -1.14
VRK3-223ENST00000601341 MIR7-3HGQ8N6C7 128 aa7.96□□□□□ -1.14
VRK3-223ENST00000601341 KLK5Q9Y337 293 aaPredicted RBP7.96□□□□□ -1.14
VRK3-223ENST00000601341 SND1-IT1Q9HBX3 110 aa7.95□□□□□ -1.14
VRK3-223ENST00000601341 CCL18P55774 89 aa7.94□□□□□ -1.14
VRK3-223ENST00000601341 A0A0U1RRA0 63 aa7.94□□□□□ -1.14
VRK3-223ENST00000601341 H0YGX0 51 aa7.94□□□□□ -1.14
VRK3-223ENST00000601341 CXCL5P42830 114 aa7.94□□□□□ -1.14
VRK3-223ENST00000601341 LINC00158P58513 81 aa7.93□□□□□ -1.14
VRK3-223ENST00000601341 COX17Q14061 63 aa7.93□□□□□ -1.14
VRK3-223ENST00000601341 MUC7Q8TAX7 377 aa7.93□□□□□ -1.14
VRK3-223ENST00000601341 TOMM7Q9P0U1 55 aa7.93□□□□□ -1.14
VRK3-223ENST00000601341 IGKV2-28A0A075B6P5 120 aa7.92□□□□□ -1.14
VRK3-223ENST00000601341 SNCGO76070 127 aa7.92□□□□□ -1.14
VRK3-223ENST00000601341 IGKV2D-28P01615 120 aa7.92□□□□□ -1.14
VRK3-223ENST00000601341 C6orf226Q5I0X4 101 aa7.92□□□□□ -1.14
VRK3-223ENST00000601341 WFDC10BQ8IUB3 73 aa7.92□□□□□ -1.14
VRK3-223ENST00000601341 APLNQ9ULZ1 77 aa7.92□□□□□ -1.14
VRK3-223ENST00000601341 ANGP03950 147 aaKnown RBP7.92□□□□□ -1.14
VRK3-223ENST00000601341 CD164L2Q6UWJ8 174 aa7.92□□□□□ -1.14
VRK3-223ENST00000601341 LINC00337Q8N6G1 96 aa7.92□□□□□ -1.14
VRK3-223ENST00000601341 LINC00588Q9Y4M8 146 aa7.92□□□□□ -1.14
VRK3-223ENST00000601341 CKS1BP61024 79 aa7.91□□□□□ -1.14
VRK3-223ENST00000601341 C5orf38Q86SI9 138 aa7.91□□□□□ -1.14
VRK3-223ENST00000601341 Q8N3U1 123 aa7.91□□□□□ -1.14
VRK3-223ENST00000601341 IGKV3OR2-268A0A0C4DH90 116 aa7.9□□□□□ -1.14
VRK3-223ENST00000601341 LINC00269Q8N2A0 174 aa7.9□□□□□ -1.14
VRK3-223ENST00000601341 NDUFC2O95298 119 aa7.89□□□□□ -1.15
VRK3-223ENST00000601341 INAFM2P0DMQ5 153 aa7.89□□□□□ -1.15
VRK3-223ENST00000601341 REG3AQ06141 175 aa7.89□□□□□ -1.15
VRK3-223ENST00000601341 LINC01556Q5JQF7 62 aa7.89□□□□□ -1.15
VRK3-223ENST00000601341 UPK3BQ9BT76 320 aa7.89□□□□□ -1.15
VRK3-223ENST00000601341 BAALC-AS2P0C853 105 aa7.89□□□□□ -1.15
VRK3-223ENST00000601341 GAGE2BQ13066 116 aa7.89□□□□□ -1.15
VRK3-223ENST00000601341 GAGE2EQ4V326 116 aa7.89□□□□□ -1.15
VRK3-223ENST00000601341 GAGE2DQ9UEU5 116 aa7.89□□□□□ -1.15
VRK3-223ENST00000601341 KLK12Q9UKR0 248 aa7.89□□□□□ -1.15
VRK3-223ENST00000601341 A0A1B0GX51 115 aa7.88□□□□□ -1.15
VRK3-223ENST00000601341 DNAH10OSP0CZ25 163 aa7.88□□□□□ -1.15
VRK3-223ENST00000601341 XCL1P47992 114 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms