RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 IGIPA6NJ69 53 aa8.21□□□□□ -1.1
TRIM28-211ENST00000597968 KRTAP1-4P0C5Y4 121 aa8.21□□□□□ -1.1
TRIM28-211ENST00000597968 LBHQ53QV2 105 aaPredicted RBP8.21□□□□□ -1.1
TRIM28-211ENST00000597968 C6orf226Q5I0X4 101 aa8.21□□□□□ -1.1
TRIM28-211ENST00000597968 C9orf129Q5T035 196 aaKnown RBP8.21□□□□□ -1.1
TRIM28-211ENST00000597968 C2orf82Q6UX34 121 aa8.21□□□□□ -1.1
TRIM28-211ENST00000597968 LPAP08519 4548 aa8.21□□□□□ -1.1
TRIM28-211ENST00000597968 ZNF861PO60384 105 aa8.2□□□□□ -1.1
TRIM28-211ENST00000597968 CXCL5P42830 114 aa8.2□□□□□ -1.1
TRIM28-211ENST00000597968 KRTAP11-1Q8IUC1 163 aa8.2□□□□□ -1.1
TRIM28-211ENST00000597968 TIMM17AQ99595 171 aa8.2□□□□□ -1.1
TRIM28-211ENST00000597968 TP73-AS1Q9UF72 201 aa8.2□□□□□ -1.1
TRIM28-211ENST00000597968 F8VRH5 84 aa8.18□□□□□ -1.1
TRIM28-211ENST00000597968 ALKBH7Q9BT30 221 aaPredicted RBP8.18□□□□□ -1.1
TRIM28-211ENST00000597968 UQCC3Q6UW78 93 aa8.17□□□□□ -1.1
TRIM28-211ENST00000597968 TOMM6Q96B49 74 aa8.16□□□□□ -1.1
TRIM28-211ENST00000597968 GEMIN7Q9H840 131 aaKnown RBP8.16□□□□□ -1.1
TRIM28-211ENST00000597968 TOMM7Q9P0U1 55 aa8.16□□□□□ -1.1
TRIM28-211ENST00000597968 C22orf24Q9Y442 160 aa8.16□□□□□ -1.1
TRIM28-211ENST00000597968 TRAV9-1A0A075B6T8 112 aa8.15□□□□□ -1.1
TRIM28-211ENST00000597968 ERASQ7Z444 233 aa8.15□□□□□ -1.1
TRIM28-211ENST00000597968 COMMD7Q86VX2 200 aa8.15□□□□□ -1.1
TRIM28-211ENST00000597968 CDKN2A-AS1Q9UH64 79 aa8.15□□□□□ -1.1
TRIM28-211ENST00000597968 SEC11CQ9BY50 192 aa8.14□□□□□ -1.11
TRIM28-211ENST00000597968 RPL28P46779 137 aaKnown RBP8.13□□□□□ -1.11
TRIM28-211ENST00000597968 PDZD11Q5EBL8 140 aa8.13□□□□□ -1.11
TRIM28-211ENST00000597968 MRPL55Q7Z7F7 128 aaKnown RBP8.13□□□□□ -1.11
TRIM28-211ENST00000597968 LINC00469Q8N7U9 141 aa8.13□□□□□ -1.11
TRIM28-211ENST00000597968 SCGB3A1Q96QR1 104 aa8.13□□□□□ -1.11
TRIM28-211ENST00000597968 TINCRA0A1B0GVN0 87 aa8.12□□□□□ -1.11
TRIM28-211ENST00000597968 GNB1LQ9BYB4 327 aa8.12□□□□□ -1.11
TRIM28-211ENST00000597968 IGLV5-45A0A087WSX0 123 aa8.11□□□□□ -1.11
TRIM28-211ENST00000597968 BCE1O60756 84 aa8.11□□□□□ -1.11
TRIM28-211ENST00000597968 S100PP25815 95 aa8.11□□□□□ -1.11
TRIM28-211ENST00000597968 XAGE1AQ9HD64 81 aa8.11□□□□□ -1.11
TRIM28-211ENST00000597968 LINC01546A6NGU7 62 aa8.1□□□□□ -1.11
TRIM28-211ENST00000597968 SMIM1B2RUZ4 78 aa8.1□□□□□ -1.11
TRIM28-211ENST00000597968 FABP9Q0Z7S8 132 aa8.1□□□□□ -1.11
TRIM28-211ENST00000597968 RPS10P5Q9NQ39 176 aa8.1□□□□□ -1.11
TRIM28-211ENST00000597968 COX19Q49B96 90 aa8.09□□□□□ -1.11
TRIM28-211ENST00000597968 C10orf91Q5T1B1 145 aa8.09□□□□□ -1.11
TRIM28-211ENST00000597968 MRPL18Q9H0U6 180 aaKnown RBP8.09□□□□□ -1.11
TRIM28-211ENST00000597968 CST9LQ9H4G1 147 aa8.09□□□□□ -1.11
TRIM28-211ENST00000597968 IGLV5-37A0A075B6J1 123 aa8.08□□□□□ -1.12
TRIM28-211ENST00000597968 CRYGAP11844 174 aa8.08□□□□□ -1.12
TRIM28-211ENST00000597968 CTAG1AP78358 180 aa8.08□□□□□ -1.12
TRIM28-211ENST00000597968 PRR4Q16378 134 aa8.08□□□□□ -1.12
TRIM28-211ENST00000597968 COX7B2Q8TF08 81 aa8.08□□□□□ -1.12
TRIM28-211ENST00000597968 FA2HQ7L5A8 372 aa8.07□□□□□ -1.12
TRIM28-211ENST00000597968 MUC2Q02817 5179 aa8.06□□□□□ -1.12
TRIM28-211ENST00000597968 A0A0U1RQV1 116 aa8.06□□□□□ -1.12
TRIM28-211ENST00000597968 H3BRM9 83 aa8.06□□□□□ -1.12
TRIM28-211ENST00000597968 SPINK8P0C7L1 97 aa8.06□□□□□ -1.12
TRIM28-211ENST00000597968 PMVKQ15126 192 aa8.06□□□□□ -1.12
TRIM28-211ENST00000597968 LINC00167Q96N53 147 aa8.06□□□□□ -1.12
TRIM28-211ENST00000597968 RHEBQ15382 184 aa8.05□□□□□ -1.12
TRIM28-211ENST00000597968 SMCO4Q9NRQ5 59 aa8.05□□□□□ -1.12
TRIM28-211ENST00000597968 ATP5LO75964 103 aa8.04□□□□□ -1.12
TRIM28-211ENST00000597968 FAM229BQ4G0N7 80 aa8.04□□□□□ -1.12
TRIM28-211ENST00000597968 SFTA2Q6UW10 78 aa8.04□□□□□ -1.12
TRIM28-211ENST00000597968 NKAPP1Q8N9T2 125 aa8.04□□□□□ -1.12
TRIM28-211ENST00000597968 TYMSOSQ8TAI1 123 aa8.04□□□□□ -1.12
TRIM28-211ENST00000597968 URB1-AS1Q96HZ7 61 aa8.04□□□□□ -1.12
TRIM28-211ENST00000597968 A0A096LNJ9 63 aa8.03□□□□□ -1.12
TRIM28-211ENST00000597968 NDUFA6P56556 154 aa8.03□□□□□ -1.12
TRIM28-211ENST00000597968 RAB5BP61020 215 aa8.03□□□□□ -1.12
TRIM28-211ENST00000597968 COX17Q14061 63 aa8.03□□□□□ -1.12
TRIM28-211ENST00000597968 PMCHL1Q16048 86 aa8.03□□□□□ -1.12
TRIM28-211ENST00000597968 TRAPPC1Q9Y5R8 145 aa8.03□□□□□ -1.12
TRIM28-211ENST00000597968 A0A087X002 238 aa8.02□□□□□ -1.13
TRIM28-211ENST00000597968 KRTAP13-1Q8IUC0 172 aa8.02□□□□□ -1.13
TRIM28-211ENST00000597968 RPL37AP8A6NKH3 93 aa8.01□□□□□ -1.13
TRIM28-211ENST00000597968 APOC3P02656 99 aa8.01□□□□□ -1.13
TRIM28-211ENST00000597968 C18orf32Q8TCD1 76 aa8.01□□□□□ -1.13
TRIM28-211ENST00000597968 IGLV5-39A0A0G2JS06 123 aa8□□□□□ -1.13
TRIM28-211ENST00000597968 LINC00614P0C842 121 aa8□□□□□ -1.13
TRIM28-211ENST00000597968 IGLC3P0DOY3 106 aa8□□□□□ -1.13
TRIM28-211ENST00000597968 UBE2AP49459 152 aa8□□□□□ -1.13
TRIM28-211ENST00000597968 RPL24P83731 157 aaKnown RBP7.99□□□□□ -1.13
TRIM28-211ENST00000597968 GAGE10A6NGK3 116 aa7.98□□□□□ -1.13
TRIM28-211ENST00000597968 TSPAN13O95857 204 aa7.98□□□□□ -1.13
TRIM28-211ENST00000597968 SCO1O75880 301 aa7.97□□□□□ -1.13
TRIM28-211ENST00000597968 ZNF22P17026 224 aaPredicted RBP7.97□□□□□ -1.13
TRIM28-211ENST00000597968 HBDP02042 147 aa7.96□□□□□ -1.14
TRIM28-211ENST00000597968 PFN2P35080 140 aa7.96□□□□□ -1.14
TRIM28-211ENST00000597968 ERG28Q9UKR5 140 aa7.96□□□□□ -1.14
TRIM28-211ENST00000597968 IGKV2D-26A0A0A0MRZ7 120 aa7.95□□□□□ -1.14
TRIM28-211ENST00000597968 ATP6V1G1O75348 118 aa7.95□□□□□ -1.14
TRIM28-211ENST00000597968 SNAPINO95295 136 aa7.95□□□□□ -1.14
TRIM28-211ENST00000597968 VPREB1P12018 145 aa7.95□□□□□ -1.14
TRIM28-211ENST00000597968 BAGE3Q86Y29 109 aa7.95□□□□□ -1.14
TRIM28-211ENST00000597968 LINC00304Q8N9R0 145 aa7.95□□□□□ -1.14
TRIM28-211ENST00000597968 TMEM126AQ9H061 195 aa7.95□□□□□ -1.14
TRIM28-211ENST00000597968 SND1-IT1Q9HBX3 110 aa7.95□□□□□ -1.14
TRIM28-211ENST00000597968 IGKV2-28A0A075B6P5 120 aa7.94□□□□□ -1.14
TRIM28-211ENST00000597968 C11orf86A6NJI1 115 aa7.94□□□□□ -1.14
TRIM28-211ENST00000597968 IGKV2D-28P01615 120 aa7.94□□□□□ -1.14
TRIM28-211ENST00000597968 KRTAP13-2Q52LG2 175 aa7.94□□□□□ -1.14
TRIM28-211ENST00000597968 SVBPQ8N300 66 aa7.94□□□□□ -1.14
TRIM28-211ENST00000597968 ZNF625Q96I27 306 aaPredicted RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms