RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 H0Y8G0 127 aa10.33□□□□□ -0.76
SHKBP1-215ENST00000597649 APOMO95445 188 aa10.33□□□□□ -0.76
SHKBP1-215ENST00000597649 IGHV3OR16-9A0A0B4J2B5 98 aa10.32□□□□□ -0.76
SHKBP1-215ENST00000597649 IGHV1-58A0A0C4DH39 117 aa10.32□□□□□ -0.76
SHKBP1-215ENST00000597649 TINCRA0A1B0GVN0 87 aa10.32□□□□□ -0.76
SHKBP1-215ENST00000597649 KRTAP10-8P60410 259 aa10.32□□□□□ -0.76
SHKBP1-215ENST00000597649 COX6A2Q02221 97 aa10.32□□□□□ -0.76
SHKBP1-215ENST00000597649 FAM19A3Q7Z5A8 133 aa10.32□□□□□ -0.76
SHKBP1-215ENST00000597649 PACRGQ96M98 296 aaPredicted RBP10.32□□□□□ -0.76
SHKBP1-215ENST00000597649 MAP1LC3CQ9BXW4 147 aa10.32□□□□□ -0.76
SHKBP1-215ENST00000597649 CHTOPQ9Y3Y2 248 aaKnown RBP10.32□□□□□ -0.76
SHKBP1-215ENST00000597649 TRAV12-1A0A0B4J245 112 aa10.31□□□□□ -0.76
SHKBP1-215ENST00000597649 S100A2P29034 98 aa10.31□□□□□ -0.76
SHKBP1-215ENST00000597649 LINC00469Q8N7U9 141 aa10.31□□□□□ -0.76
SHKBP1-215ENST00000597649 A0A087WZ39 114 aa10.29□□□□□ -0.76
SHKBP1-215ENST00000597649 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.29□□□□□ -0.76
SHKBP1-215ENST00000597649 IGLC3P0DOY3 106 aa10.29□□□□□ -0.76
SHKBP1-215ENST00000597649 PRR3P79522 188 aaKnown RBP10.29□□□□□ -0.76
SHKBP1-215ENST00000597649 HIGD2BQ4VC39 106 aa10.29□□□□□ -0.76
SHKBP1-215ENST00000597649 H3BRM9 83 aa10.28□□□□□ -0.76
SHKBP1-215ENST00000597649 ZNF561-AS1K7EIQ3 104 aa10.28□□□□□ -0.76
SHKBP1-215ENST00000597649 C15orf56Q8N910 161 aa10.28□□□□□ -0.76
SHKBP1-215ENST00000597649 C7orf33Q8WU49 177 aa10.28□□□□□ -0.76
SHKBP1-215ENST00000597649 CDKN2A-AS1Q9UH64 79 aa10.28□□□□□ -0.76
SHKBP1-215ENST00000597649 F8VRH5 84 aa10.27□□□□□ -0.77
SHKBP1-215ENST00000597649 SNRPEP62304 92 aaKnown RBP10.27□□□□□ -0.77
SHKBP1-215ENST00000597649 LINC01561Q8N1V8 128 aa10.27□□□□□ -0.77
SHKBP1-215ENST00000597649 ORAOV1Q8WV07 137 aa10.27□□□□□ -0.77
SHKBP1-215ENST00000597649 IGLV4-69A0A075B6H9 119 aa10.26□□□□□ -0.77
SHKBP1-215ENST00000597649 GVQW2A0A096LPI5 108 aaPredicted RBP10.26□□□□□ -0.77
SHKBP1-215ENST00000597649 MAJINQ3KP22 176 aa10.26□□□□□ -0.77
SHKBP1-215ENST00000597649 HIST3H2BBQ8N257 126 aa10.26□□□□□ -0.77
SHKBP1-215ENST00000597649 OR10D4PQ8NGN7 298 aa10.26□□□□□ -0.77
SHKBP1-215ENST00000597649 MRPL35Q9NZE8 188 aaKnown RBP10.26□□□□□ -0.77
SHKBP1-215ENST00000597649 SYS1-DBNDD2H3BUS1 97 aa10.25□□□□□ -0.77
SHKBP1-215ENST00000597649 KRTDAPP60985 99 aa10.25□□□□□ -0.77
SHKBP1-215ENST00000597649 SPAG11BQ08648 103 aa10.25□□□□□ -0.77
SHKBP1-215ENST00000597649 TMEM170BQ5T4T1 132 aa10.25□□□□□ -0.77
SHKBP1-215ENST00000597649 MUC2Q02817 5179 aa10.25□□□□□ -0.77
SHKBP1-215ENST00000597649 IGLV5-45A0A087WSX0 123 aa10.24□□□□□ -0.77
SHKBP1-215ENST00000597649 IGKV2-24A0A0C4DH68 120 aa10.24□□□□□ -0.77
SHKBP1-215ENST00000597649 C11orf86A6NJI1 115 aa10.24□□□□□ -0.77
SHKBP1-215ENST00000597649 PRSS2P07478 247 aa10.24□□□□□ -0.77
SHKBP1-215ENST00000597649 STPG4Q8N801 248 aa10.24□□□□□ -0.77
SHKBP1-215ENST00000597649 SPINK8P0C7L1 97 aa10.23□□□□□ -0.77
SHKBP1-215ENST00000597649 ZNF22P17026 224 aaPredicted RBP10.23□□□□□ -0.77
SHKBP1-215ENST00000597649 PLNP26678 52 aa10.23□□□□□ -0.77
SHKBP1-215ENST00000597649 PET117Q6UWS5 81 aa10.23□□□□□ -0.77
SHKBP1-215ENST00000597649 LINC00526Q96FQ7 95 aa10.23□□□□□ -0.77
SHKBP1-215ENST00000597649 TOMM7Q9P0U1 55 aa10.23□□□□□ -0.77
SHKBP1-215ENST00000597649 TMA7Q9Y2S6 64 aaKnown RBP10.23□□□□□ -0.77
SHKBP1-215ENST00000597649 DPM2O94777 84 aa10.22□□□□□ -0.77
SHKBP1-215ENST00000597649 C3orf79P0CE67 100 aa10.22□□□□□ -0.77
SHKBP1-215ENST00000597649 SRSF9Q13242 221 aaKnown RBP eCLIP10.22□□□□□ -0.77
SHKBP1-215ENST00000597649 CAMK2N2Q96S95 79 aa10.22□□□□□ -0.77
SHKBP1-215ENST00000597649 HIST1H2BLQ99880 126 aa10.22□□□□□ -0.77
SHKBP1-215ENST00000597649 PMCHL2Q9BQD1 86 aa10.22□□□□□ -0.77
SHKBP1-215ENST00000597649 C20orf202A1L168 122 aa10.21□□□□□ -0.77
SHKBP1-215ENST00000597649 C5orf52A6NGY3 159 aa10.21□□□□□ -0.77
SHKBP1-215ENST00000597649 C6orf226Q5I0X4 101 aa10.21□□□□□ -0.77
SHKBP1-215ENST00000597649 SPINK6Q6UWN8 80 aa10.21□□□□□ -0.77
SHKBP1-215ENST00000597649 A0A096LNI7 61 aa10.2□□□□□ -0.78
SHKBP1-215ENST00000597649 SMIM1B2RUZ4 78 aa10.2□□□□□ -0.78
SHKBP1-215ENST00000597649 IGKCP01834 107 aa10.2□□□□□ -0.78
SHKBP1-215ENST00000597649 SYCNQ0VAF6 134 aa10.2□□□□□ -0.78
SHKBP1-215ENST00000597649 C2orf48Q96LS8 159 aa10.2□□□□□ -0.78
SHKBP1-215ENST00000597649 F8WDY8 70 aa10.19□□□□□ -0.78
SHKBP1-215ENST00000597649 CKS1BP61024 79 aa10.19□□□□□ -0.78
SHKBP1-215ENST00000597649 NDUFA1O15239 70 aa10.18□□□□□ -0.78
SHKBP1-215ENST00000597649 LINC01545Q5VT33 79 aa10.18□□□□□ -0.78
SHKBP1-215ENST00000597649 REG3GQ6UW15 175 aa10.18□□□□□ -0.78
SHKBP1-215ENST00000597649 Q8IZM0 81 aa10.18□□□□□ -0.78
SHKBP1-215ENST00000597649 COX7B2Q8TF08 81 aa10.18□□□□□ -0.78
SHKBP1-215ENST00000597649 CARD19Q96LW7 228 aa10.18□□□□□ -0.78
SHKBP1-215ENST00000597649 TMEM223A0PJW6 202 aa10.17□□□□□ -0.78
SHKBP1-215ENST00000597649 HERVK_113P61574 105 aa10.17□□□□□ -0.78
SHKBP1-215ENST00000597649 KIAA0087Q14695 138 aa10.17□□□□□ -0.78
SHKBP1-215ENST00000597649 CXCL5P42830 114 aa10.15□□□□□ -0.78
SHKBP1-215ENST00000597649 AKR1D1P51857 326 aa10.15□□□□□ -0.78
SHKBP1-215ENST00000597649 C2orf82Q6UX34 121 aa10.15□□□□□ -0.78
SHKBP1-215ENST00000597649 IGLV5-39A0A0G2JS06 123 aa10.14□□□□□ -0.79
SHKBP1-215ENST00000597649 UNQ6190/PRO20217Q6UXQ8 127 aa10.14□□□□□ -0.79
SHKBP1-215ENST00000597649 PKIGQ9Y2B9 76 aa10.14□□□□□ -0.79
SHKBP1-215ENST00000597649 RNF151Q2KHN1 245 aa10.12□□□□□ -0.79
SHKBP1-215ENST00000597649 C10orf25Q5T742 122 aa10.12□□□□□ -0.79
SHKBP1-215ENST00000597649 Q6ZRP5 223 aa10.12□□□□□ -0.79
SHKBP1-215ENST00000597649 TRBV30A0A0K0K1B3 111 aa10.11□□□□□ -0.79
SHKBP1-215ENST00000597649 PLEKHB2Q96CS7 222 aa10.11□□□□□ -0.79
SHKBP1-215ENST00000597649 LINC00474Q9P2X8 69 aa10.11□□□□□ -0.79
SHKBP1-215ENST00000597649 LEPROTO15243 131 aa10.1□□□□□ -0.79
SHKBP1-215ENST00000597649 SCGB1D1O95968 90 aa10.1□□□□□ -0.79
SHKBP1-215ENST00000597649 C6orf48Q9UBA6 75 aa10.1□□□□□ -0.79
SHKBP1-215ENST00000597649 LOC107984640A0A0U1RRK4 108 aa10.09□□□□□ -0.79
SHKBP1-215ENST00000597649 SFTA2Q6UW10 78 aa10.09□□□□□ -0.79
SHKBP1-215ENST00000597649 ATOH7Q8N100 152 aa10.09□□□□□ -0.79
SHKBP1-215ENST00000597649 LGALS3P17931 250 aaKnown RBP10.08□□□□□ -0.8
SHKBP1-215ENST00000597649 A0A1W2PNN7 141 aa10.07□□□□□ -0.8
SHKBP1-215ENST00000597649 J3QQQ9 107 aa10.07□□□□□ -0.8
SHKBP1-215ENST00000597649 RPL18AQ02543 176 aaKnown RBP10.07□□□□□ -0.8
SHKBP1-215ENST00000597649 HSBP1L1C9JCN9 74 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms