RNA–Protein interactions for RNA: ENST00000590627.5

GCDH-213, Transcript of glutaryl-CoA dehydrogenase, human

TSL 1 (best)

Gene GCDH, Length 1,051 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GCDH-213	ENST00000590627	HSBP1L1	C9JCN9	74 aa		10.84	□□□□□ -0.67
GCDH-213	ENST00000590627	LECT2	O14960	151 aa		10.84	□□□□□ -0.67
GCDH-213	ENST00000590627	LEPROT	O15243	131 aa		10.84	□□□□□ -0.67
GCDH-213	ENST00000590627	SPAG11B	Q08648	103 aa		10.84	□□□□□ -0.67
GCDH-213	ENST00000590627	COX7B2	Q8TF08	81 aa		10.84	□□□□□ -0.67
GCDH-213	ENST00000590627	PLEKHB2	Q96CS7	222 aa		10.84	□□□□□ -0.67
GCDH-213	ENST00000590627		F8WDY8	70 aa		10.83	□□□□□ -0.68
GCDH-213	ENST00000590627	ZNF561-AS1	K7EIQ3	104 aa		10.83	□□□□□ -0.68
GCDH-213	ENST00000590627	MAJIN	Q3KP22	176 aa		10.83	□□□□□ -0.68
GCDH-213	ENST00000590627	HIGD2B	Q4VC39	106 aa		10.83	□□□□□ -0.68
GCDH-213	ENST00000590627	NTN5	Q8WTR8	489 aa	Predicted RBP	10.83	□□□□□ -0.68
GCDH-213	ENST00000590627	C2orf48	Q96LS8	159 aa		10.83	□□□□□ -0.68
GCDH-213	ENST00000590627	PRSS2	P07478	247 aa		10.82	□□□□□ -0.68
GCDH-213	ENST00000590627	SMIM6	P0DI80	62 aa		10.82	□□□□□ -0.68
GCDH-213	ENST00000590627	ANKRD39	Q53RE8	183 aa		10.82	□□□□□ -0.68
GCDH-213	ENST00000590627	TOMM7	Q9P0U1	55 aa		10.82	□□□□□ -0.68
GCDH-213	ENST00000590627	IGKV2D-26	A0A0A0MRZ7	120 aa		10.81	□□□□□ -0.68
GCDH-213	ENST00000590627		J3QQQ9	107 aa		10.81	□□□□□ -0.68
GCDH-213	ENST00000590627	C6orf226	Q5I0X4	101 aa		10.81	□□□□□ -0.68
GCDH-213	ENST00000590627	CXCL5	P42830	114 aa		10.8	□□□□□ -0.68
GCDH-213	ENST00000590627	XG	P55808	180 aa		10.8	□□□□□ -0.68
GCDH-213	ENST00000590627	TSPEAR-AS2	P59090	65 aa		10.8	□□□□□ -0.68
GCDH-213	ENST00000590627		Q8N814	137 aa		10.8	□□□□□ -0.68
GCDH-213	ENST00000590627	VAMP8	Q9BV40	100 aa		10.8	□□□□□ -0.68
GCDH-213	ENST00000590627	DMBT1	Q9UGM3	2413 aa	Predicted RBP	10.8	□□□□□ -0.68
GCDH-213	ENST00000590627	SFTA2	Q6UW10	78 aa		10.79	□□□□□ -0.68
GCDH-213	ENST00000590627	LINC00526	Q96FQ7	95 aa		10.79	□□□□□ -0.68
GCDH-213	ENST00000590627	SLPI	P03973	132 aa		10.78	□□□□□ -0.68
GCDH-213	ENST00000590627	INAFM2	P0DMQ5	153 aa		10.78	□□□□□ -0.68
GCDH-213	ENST00000590627	LGALS3	P17931	250 aa	Known RBP	10.78	□□□□□ -0.68
GCDH-213	ENST00000590627	NMU	P48645	174 aa		10.78	□□□□□ -0.68
GCDH-213	ENST00000590627	CKS1B	P61024	79 aa		10.78	□□□□□ -0.68
GCDH-213	ENST00000590627	CNBP	P62633	177 aa	Known RBP	10.78	□□□□□ -0.68
GCDH-213	ENST00000590627	ZNF625	Q96I27	306 aa	Predicted RBP	10.78	□□□□□ -0.68
GCDH-213	ENST00000590627	VPS13B	Q7Z7G8	4022 aa		10.77	□□□□□ -0.69
GCDH-213	ENST00000590627	NDUFA1	O15239	70 aa		10.77	□□□□□ -0.69
GCDH-213	ENST00000590627	FUS	P35637	526 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
GCDH-213	ENST00000590627	C2orf82	Q6UX34	121 aa		10.77	□□□□□ -0.69
GCDH-213	ENST00000590627	CAMK2N2	Q96S95	79 aa		10.77	□□□□□ -0.69
GCDH-213	ENST00000590627	NDUFA12	Q9UI09	145 aa		10.77	□□□□□ -0.69
GCDH-213	ENST00000590627	SYCN	Q0VAF6	134 aa		10.76	□□□□□ -0.69
GCDH-213	ENST00000590627	PAM16	Q9Y3D7	125 aa		10.76	□□□□□ -0.69
GCDH-213	ENST00000590627	SPATA45	Q537H7	98 aa		10.75	□□□□□ -0.69
GCDH-213	ENST00000590627	C10orf25	Q5T742	122 aa		10.75	□□□□□ -0.69
GCDH-213	ENST00000590627		Q5VSD8	79 aa		10.75	□□□□□ -0.69
GCDH-213	ENST00000590627	UNQ6190/PRO20217	Q6UXQ8	127 aa		10.75	□□□□□ -0.69
GCDH-213	ENST00000590627	TRBV30	A0A0K0K1B3	111 aa		10.74	□□□□□ -0.69
GCDH-213	ENST00000590627	MYMX	A0A1B0GTQ4	84 aa		10.74	□□□□□ -0.69
GCDH-213	ENST00000590627	KRTAP10-1	P60331	282 aa		10.74	□□□□□ -0.69
GCDH-213	ENST00000590627	HERV-K104	P63124	156 aa		10.74	□□□□□ -0.69
GCDH-213	ENST00000590627	S100A12	P80511	92 aa		10.74	□□□□□ -0.69
GCDH-213	ENST00000590627	RNF151	Q2KHN1	245 aa		10.74	□□□□□ -0.69
GCDH-213	ENST00000590627		Q6ZRU5	148 aa		10.74	□□□□□ -0.69
GCDH-213	ENST00000590627	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	10.73	□□□□□ -0.69
GCDH-213	ENST00000590627	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	10.73	□□□□□ -0.69
GCDH-213	ENST00000590627	PCP2	Q8IVA1	136 aa		10.73	□□□□□ -0.69
GCDH-213	ENST00000590627	CARD19	Q96LW7	228 aa		10.73	□□□□□ -0.69
GCDH-213	ENST00000590627	MYCBP2	O75592	4640 aa		10.73	□□□□□ -0.69
GCDH-213	ENST00000590627	COX8A	P10176	69 aa		10.72	□□□□□ -0.69
GCDH-213	ENST00000590627	GCSH	P23434	173 aa		10.72	□□□□□ -0.69
GCDH-213	ENST00000590627	TTTY13	Q9BZ97	58 aa		10.72	□□□□□ -0.69
GCDH-213	ENST00000590627	C6orf48	Q9UBA6	75 aa		10.72	□□□□□ -0.69
GCDH-213	ENST00000590627	ZNF815P	A8K554	130 aa		10.71	□□□□□ -0.69
GCDH-213	ENST00000590627	DLEU1	O43261	78 aa		10.71	□□□□□ -0.69
GCDH-213	ENST00000590627	BOD1L2	Q8IYS8	172 aa		10.7	□□□□□ -0.7
GCDH-213	ENST00000590627	C9orf163	Q8N9P6	203 aa		10.7	□□□□□ -0.7
GCDH-213	ENST00000590627	SRRM2	Q9UQ35	2752 aa	Known RBP	10.7	□□□□□ -0.7
GCDH-213	ENST00000590627		A0A0J9YXY3	114 aa		10.69	□□□□□ -0.7
GCDH-213	ENST00000590627	LINC00587	B1AMM8	73 aa		10.69	□□□□□ -0.7
GCDH-213	ENST00000590627	LINC00518	Q8N0U6	118 aa		10.69	□□□□□ -0.7
GCDH-213	ENST00000590627	C12orf57	Q99622	126 aa		10.69	□□□□□ -0.7
GCDH-213	ENST00000590627	COX17	Q14061	63 aa		10.68	□□□□□ -0.7
GCDH-213	ENST00000590627	DNAH8	Q96JB1	4490 aa		10.68	□□□□□ -0.7
GCDH-213	ENST00000590627	IGLV5-52	A0A0A0MRZ9	124 aa		10.67	□□□□□ -0.7
GCDH-213	ENST00000590627	FAM229A	H3BQW9	127 aa		10.67	□□□□□ -0.7
GCDH-213	ENST00000590627	SMR3B	P02814	79 aa	Predicted RBP	10.67	□□□□□ -0.7
GCDH-213	ENST00000590627	TLX1NB	P0CAT3	122 aa		10.67	□□□□□ -0.7
GCDH-213	ENST00000590627	C9orf116	Q5BN46	136 aa	Predicted RBP	10.67	□□□□□ -0.7
GCDH-213	ENST00000590627	C14orf144	Q96I85	54 aa		10.67	□□□□□ -0.7
GCDH-213	ENST00000590627	ERG28	Q9UKR5	140 aa		10.67	□□□□□ -0.7
GCDH-213	ENST00000590627	FLG2	Q5D862	2391 aa	Predicted RBP	10.67	□□□□□ -0.7
GCDH-213	ENST00000590627	TIMM17B	O60830	172 aa		10.66	□□□□□ -0.7
GCDH-213	ENST00000590627	SLC25A34	Q6PIV7	304 aa		10.66	□□□□□ -0.7
GCDH-213	ENST00000590627	NDUFC2-KCTD14	E9PQ53	114 aa		10.65	□□□□□ -0.7
GCDH-213	ENST00000590627	PKIG	Q9Y2B9	76 aa		10.65	□□□□□ -0.7
GCDH-213	ENST00000590627	MEIG1	Q5JSS6	88 aa		10.64	□□□□□ -0.71
GCDH-213	ENST00000590627	SCGB1D4	Q6XE38	83 aa		10.64	□□□□□ -0.71
GCDH-213	ENST00000590627	LOC107984640	A0A0U1RRK4	108 aa		10.63	□□□□□ -0.71
GCDH-213	ENST00000590627	SMIM13	P0DJ93	91 aa		10.63	□□□□□ -0.71
GCDH-213	ENST00000590627	CIRBP	Q14011	172 aa	Known RBP	10.63	□□□□□ -0.71
GCDH-213	ENST00000590627	SDIM1	Q6ZPB5	146 aa		10.63	□□□□□ -0.71
GCDH-213	ENST00000590627	LITAF	Q99732	161 aa		10.63	□□□□□ -0.71
GCDH-213	ENST00000590627	PFN2	P35080	140 aa		10.62	□□□□□ -0.71
GCDH-213	ENST00000590627	LINC00158	P58513	81 aa		10.62	□□□□□ -0.71
GCDH-213	ENST00000590627	TP73-AS1	Q9UF72	201 aa		10.62	□□□□□ -0.71
GCDH-213	ENST00000590627		Q6ZRP5	223 aa		10.61	□□□□□ -0.71
GCDH-213	ENST00000590627	UQCR10	Q9UDW1	63 aa		10.61	□□□□□ -0.71
GCDH-213	ENST00000590627	TMEM238	C9JI98	176 aa		10.6	□□□□□ -0.71
GCDH-213	ENST00000590627	HAMP	P81172	84 aa		10.6	□□□□□ -0.71
GCDH-213	ENST00000590627	LINC01620	Q4KN68	170 aa		10.6	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms