RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 UBR3Q6ZT12 1888 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 EPRSP07814 1512 aaKnown RBP0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 PRDM15P57071 1507 aaPredicted RBP0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 TULP4Q9NRJ4 1543 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 BCORQ6W2J9 1755 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 ATRQ13535 2644 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 RNF213Q63HN8 5207 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 APC2O95996 2303 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 FANCAO15360 1455 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 IQSEC2Q5JU85 1478 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 TEX14Q8IWB6 1497 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 KNDC1Q76NI1 1749 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 MAP1BP46821 2468 aaKnown RBP0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 MYO3AQ8NEV4 1616 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 TENM4Q6N022 2769 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 TRBV7-4A0A0J9YYF1 115 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 TMEM218A2RU14 115 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 C10orf142B7Z368 130 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 MPC2O95563 127 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 LINC00032P0C843 101 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 IGLC1P0CG04 106 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 DEFB123Q8N688 67 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 ACBD7Q8N6N7 88 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 TSLPQ969D9 159 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 VAMP8Q9BV40 100 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 LINC00474Q9P2X8 69 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 ARL2-SNX15V9GYD0 113 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 CHD8Q9HCK8 2581 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 CNTLNQ9NXG0 1405 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 CNOT1A5YKK6 2376 aaKnown RBP0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 HUWE1Q7Z6Z7 4374 aaKnown RBP0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 FMN2Q9NZ56 1722 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 MARF1Q9Y4F3 1742 aaKnown RBP0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 ADGRL2O95490 1459 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 POLA1P09884 1462 aaPredicted RBP0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 C1orf167Q5SNV9 1468 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 PLEKHH2Q8IVE3 1493 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 MLH3Q9UHC1 1453 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 RAPGEF2Q9Y4G8 1499 aa0.1□□□□□ -2.39
SMCHD1-206ENST00000581631 ALKQ9UM73 1620 aa0.09□□□□□ -2.39
SMCHD1-206ENST00000581631 TRAV30A0A087WSZ9 112 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 I3L2K1 104 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 ATOX1O00244 68 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 BCE1O60756 84 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 SNCAP37840 140 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 UBA52P62987 128 aaKnown RBP0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 PMCHL1Q16048 86 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 DEFB109BQ30KR1 87 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 C10orf113Q5VZT2 155 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 FAM223AQ8IWN6 122 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 USMG5Q96IX5 58 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 ABCC5O15440 1437 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 TROQ12816 1431 aaPredicted RBP0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 EDC4Q6P2E9 1401 aaKnown RBP0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 BAZ1AQ9NRL2 1556 aaPredicted RBP0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 SUPT6HQ7KZ85 1726 aaKnown RBP0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 UBR1Q8IWV7 1749 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 MUC12Q9UKN1 5478 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 COL6A3P12111 3177 aa0.09□□□□□ -2.4
SMCHD1-206ENST00000581631 CUX1P39880 1505 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 ZANQ9Y493 2812 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 NSD1Q96L73 2696 aaPredicted RBP0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 TTC37Q6PGP7 1564 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 TRBV25-1A0A075B6N4 114 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 FAM223BA6NKX1 122 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 UQCRHP07919 91 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 COX8AP10176 69 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 COX6B1P14854 86 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 RBP2P50120 134 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 SEC11AP67812 179 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 C14orf144Q96I85 54 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 TRGV9Q99603 122 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 DPY30Q9C005 99 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 RGPD8O14715 1765 aaPredicted RBP0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 LTN1O94822 1766 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 RGPD5Q99666 1765 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 EP300Q09472 2414 aaPredicted RBP0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 MYCBP2O75592 4640 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 ABCC3O15438 1527 aa0.08□□□□□ -2.4
SMCHD1-206ENST00000581631 CACNA1AO00555 2505 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 MAP3K4Q9Y6R4 1608 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 FXYD6-FXYD2A0A087WZ82 144 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 hADV29S1A0JD25 119 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 ATP6V1G2-DDX39BF2Z307 99 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 H3BQF6 201 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 GNGT2O14610 69 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 SPINK4O60575 86 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 S100A8P05109 93 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 SPRR1AP35321 89 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 HMGN3Q15651 99 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 PSMG4Q5JS54 123 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 ALKAL2Q6UX46 152 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 SERP2Q8N6R1 65 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 LINC01600Q96MT4 127 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 CACFD1Q9UGQ2 172 aa0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 FLNBO75369 2602 aaKnown RBP0.07□□□□□ -2.4
SMCHD1-206ENST00000581631 KMT2AQ03164 3969 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 SETXQ7Z333 2677 aaKnown RBP0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 ATP10BO94823 1461 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 NLRP1Q9C000 1473 aa0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms