RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 SPANXDQ9BXN6 97 aa6.06□□□□□ -1.44
VPS39-207ENST00000563692 NHP2Q9NX24 153 aaKnown RBP6.06□□□□□ -1.44
VPS39-207ENST00000563692 SPANXCQ9NY87 97 aa6.06□□□□□ -1.44
VPS39-207ENST00000563692 COX11Q9Y6N1 276 aa6.06□□□□□ -1.44
VPS39-207ENST00000563692 GAGE12HA6NDE8 117 aa6.05□□□□□ -1.44
VPS39-207ENST00000563692 TAX1BP3O14907 124 aa6.05□□□□□ -1.44
VPS39-207ENST00000563692 MEIG1Q5JSS6 88 aa6.05□□□□□ -1.44
VPS39-207ENST00000563692 CFAP161Q6P656 301 aa6.05□□□□□ -1.44
VPS39-207ENST00000563692 WFDC10BQ8IUB3 73 aa6.05□□□□□ -1.44
VPS39-207ENST00000563692 MUSTN1Q8IVN3 82 aa6.05□□□□□ -1.44
VPS39-207ENST00000563692 IGLV10-54A0A075B6I4 117 aa6.04□□□□□ -1.44
VPS39-207ENST00000563692 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.04□□□□□ -1.44
VPS39-207ENST00000563692 C9orf118A6NHY6 69 aa6.04□□□□□ -1.44
VPS39-207ENST00000563692 CKS1BP61024 79 aa6.04□□□□□ -1.44
VPS39-207ENST00000563692 ENHOQ6UWT2 76 aa6.04□□□□□ -1.44
VPS39-207ENST00000563692 Q8IZM0 81 aa6.04□□□□□ -1.44
VPS39-207ENST00000563692 Q8N3U1 123 aa6.04□□□□□ -1.44
VPS39-207ENST00000563692 RAB37Q96AX2 223 aa6.04□□□□□ -1.44
VPS39-207ENST00000563692 ZNF625Q96I27 306 aaPredicted RBP6.04□□□□□ -1.44
VPS39-207ENST00000563692 PLECQ15149 4684 aaKnown RBP6.04□□□□□ -1.44
VPS39-207ENST00000563692 DNAH10OSP0CZ25 163 aa6.03□□□□□ -1.44
VPS39-207ENST00000563692 CXCL5P42830 114 aa6.03□□□□□ -1.44
VPS39-207ENST00000563692 FOXI1Q12951 378 aa6.03□□□□□ -1.44
VPS39-207ENST00000563692 VAMP3Q15836 100 aa6.03□□□□□ -1.44
VPS39-207ENST00000563692 A0A1B0GWB2 263 aa6.02□□□□□ -1.45
VPS39-207ENST00000563692 IBA57-AS1B1ANH7 110 aa6.02□□□□□ -1.45
VPS39-207ENST00000563692 K7EP13 123 aa6.02□□□□□ -1.45
VPS39-207ENST00000563692 ADAMTSL4-AS1Q5T5F5 129 aa6.02□□□□□ -1.45
VPS39-207ENST00000563692 LINC00336Q6ZUF6 198 aa6.02□□□□□ -1.45
VPS39-207ENST00000563692 LITAFQ99732 161 aa6.02□□□□□ -1.45
VPS39-207ENST00000563692 C1orf43Q9BWL3 253 aa6.02□□□□□ -1.45
VPS39-207ENST00000563692 LINC00588Q9Y4M8 146 aa6.02□□□□□ -1.45
VPS39-207ENST00000563692 A4D1N5 150 aa6.01□□□□□ -1.45
VPS39-207ENST00000563692 LINC00158P58513 81 aa6.01□□□□□ -1.45
VPS39-207ENST00000563692 RMI2Q96E14 147 aa6.01□□□□□ -1.45
VPS39-207ENST00000563692 UPK3BQ9BT76 320 aa6.01□□□□□ -1.45
VPS39-207ENST00000563692 PPDPFQ9H3Y8 114 aa6.01□□□□□ -1.45
VPS39-207ENST00000563692 HYDINQ4G0P3 5121 aa6.01□□□□□ -1.45
VPS39-207ENST00000563692 KMT2AQ03164 3969 aa6.01□□□□□ -1.45
VPS39-207ENST00000563692 A0A0U1RRA0 63 aa6□□□□□ -1.45
VPS39-207ENST00000563692 H3BUT2 72 aa6□□□□□ -1.45
VPS39-207ENST00000563692 K7ERJ3 54 aa6□□□□□ -1.45
VPS39-207ENST00000563692 M0R2N4 97 aa6□□□□□ -1.45
VPS39-207ENST00000563692 CFC1BP0CG36 223 aa6□□□□□ -1.45
VPS39-207ENST00000563692 CFC1P0CG37 223 aa6□□□□□ -1.45
VPS39-207ENST00000563692 FABP2P12104 132 aa6□□□□□ -1.45
VPS39-207ENST00000563692 GTF2H5Q6ZYL4 71 aa6□□□□□ -1.45
VPS39-207ENST00000563692 LINC00308Q8TCZ7 52 aa6□□□□□ -1.45
VPS39-207ENST00000563692 PRO1854Q9UHT4 67 aa6□□□□□ -1.45
VPS39-207ENST00000563692 A0A0B4J2C4 111 aa5.99□□□□□ -1.45
VPS39-207ENST00000563692 SPAG11BQ08648 103 aa5.99□□□□□ -1.45
VPS39-207ENST00000563692 COX17Q14061 63 aa5.99□□□□□ -1.45
VPS39-207ENST00000563692 KIAA0087Q14695 138 aa5.99□□□□□ -1.45
VPS39-207ENST00000563692 ERG28Q9UKR5 140 aa5.99□□□□□ -1.45
VPS39-207ENST00000563692 IGKV2D-24A0A075B6R9 120 aa5.98□□□□□ -1.45
VPS39-207ENST00000563692 A0A1W2PPM0 123 aa5.98□□□□□ -1.45
VPS39-207ENST00000563692 GAGE10A6NGK3 116 aa5.98□□□□□ -1.45
VPS39-207ENST00000563692 ZNF561-AS1K7EIQ3 104 aa5.98□□□□□ -1.45
VPS39-207ENST00000563692 NPC2P61916 151 aa5.98□□□□□ -1.45
VPS39-207ENST00000563692 UBE2V1Q13404 147 aa5.98□□□□□ -1.45
VPS39-207ENST00000563692 PGPEP1Q9NXJ5 209 aa5.98□□□□□ -1.45
VPS39-207ENST00000563692 F8WDY8 70 aa5.97□□□□□ -1.45
VPS39-207ENST00000563692 PFN2P35080 140 aa5.97□□□□□ -1.45
VPS39-207ENST00000563692 C1orf134Q5TEV5 83 aa5.97□□□□□ -1.45
VPS39-207ENST00000563692 LYRM7Q5U5X0 104 aa5.97□□□□□ -1.45
VPS39-207ENST00000563692 MIR7-3HGQ8N6C7 128 aa5.97□□□□□ -1.45
VPS39-207ENST00000563692 DAND5Q8N907 189 aa5.97□□□□□ -1.45
VPS39-207ENST00000563692 EPPK1P58107 5090 aaKnown RBP5.97□□□□□ -1.45
VPS39-207ENST00000563692 BIRC6Q9NR09 4857 aa5.97□□□□□ -1.45
VPS39-207ENST00000563692 C2orf82Q6UX34 121 aa5.96□□□□□ -1.46
VPS39-207ENST00000563692 Q9HAA7 133 aa5.96□□□□□ -1.46
VPS39-207ENST00000563692 SCGB1C2P0DMR2 95 aa5.95□□□□□ -1.46
VPS39-207ENST00000563692 PSMB2P49721 201 aa5.95□□□□□ -1.46
VPS39-207ENST00000563692 Q1RN00 199 aa5.95□□□□□ -1.46
VPS39-207ENST00000563692 KRTAP26-1Q6PEX3 210 aa5.95□□□□□ -1.46
VPS39-207ENST00000563692 Q6ZR54 194 aa5.95□□□□□ -1.46
VPS39-207ENST00000563692 NTN5Q8WTR8 489 aaPredicted RBP5.95□□□□□ -1.46
VPS39-207ENST00000563692 C2orf48Q96LS8 159 aa5.95□□□□□ -1.46
VPS39-207ENST00000563692 NAA38Q9BRA0 125 aaKnown RBP5.95□□□□□ -1.46
VPS39-207ENST00000563692 SPCS1Q9Y6A9 102 aa5.95□□□□□ -1.46
VPS39-207ENST00000563692 GVQW2A0A096LPI5 108 aaPredicted RBP5.94□□□□□ -1.46
VPS39-207ENST00000563692 TRAV13-2A0A0B4J235 113 aa5.94□□□□□ -1.46
VPS39-207ENST00000563692 LOC107984156A0A0G2JMH3 177 aa5.94□□□□□ -1.46
VPS39-207ENST00000563692 K7EP34 96 aa5.94□□□□□ -1.46
VPS39-207ENST00000563692 RTL8CO15255 209 aa5.94□□□□□ -1.46
VPS39-207ENST00000563692 TSPAN13O95857 204 aa5.94□□□□□ -1.46
VPS39-207ENST00000563692 COX6CP09669 75 aa5.94□□□□□ -1.46
VPS39-207ENST00000563692 UNQ6190/PRO20217Q6UXQ8 127 aa5.94□□□□□ -1.46
VPS39-207ENST00000563692 ARL17AQ8IVW1 177 aa5.94□□□□□ -1.46
VPS39-207ENST00000563692 CAMK2N2Q96S95 79 aa5.94□□□□□ -1.46
VPS39-207ENST00000563692 SND1-IT1Q9HBX3 110 aa5.94□□□□□ -1.46
VPS39-207ENST00000563692 TRBV20-1A0A075B6N2 111 aa5.93□□□□□ -1.46
VPS39-207ENST00000563692 TRBV30A0A0K0K1B3 111 aa5.93□□□□□ -1.46
VPS39-207ENST00000563692 NBDYA0A0U1RRE5 68 aa5.93□□□□□ -1.46
VPS39-207ENST00000563692 H7C2G1 150 aa5.93□□□□□ -1.46
VPS39-207ENST00000563692 TTC32Q5I0X7 151 aa5.93□□□□□ -1.46
VPS39-207ENST00000563692 C6orf223Q8N319 242 aa5.93□□□□□ -1.46
VPS39-207ENST00000563692 HIGD2BQ4VC39 106 aa5.92□□□□□ -1.46
VPS39-207ENST00000563692 SOSTDC1Q6X4U4 206 aa5.92□□□□□ -1.46
VPS39-207ENST00000563692 FRAS1Q86XX4 4008 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms