RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 SLPIP03973 132 aa6.27□□□□□ -1.41
CUX1-216ENST00000558469 FUSP35637 526 aaKnown RBP eCLIP6.27□□□□□ -1.411e-7■■■■□ 22.5
CUX1-216ENST00000558469 CKS1BP61024 79 aa6.27□□□□□ -1.41
CUX1-216ENST00000558469 MAJINQ3KP22 176 aa6.27□□□□□ -1.41
CUX1-216ENST00000558469 C2orf82Q6UX34 121 aa6.27□□□□□ -1.41
CUX1-216ENST00000558469 NTN5Q8WTR8 489 aaPredicted RBP6.27□□□□□ -1.41
CUX1-216ENST00000558469 CAMK2N2Q96S95 79 aa6.27□□□□□ -1.41
CUX1-216ENST00000558469 KRTAP9-2Q9BYQ4 174 aa6.27□□□□□ -1.41
CUX1-216ENST00000558469 DNAH17Q9UFH2 4485 aa6.26□□□□□ -1.41
CUX1-216ENST00000558469 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.26□□□□□ -1.41
CUX1-216ENST00000558469 E9PLD3 99 aa6.26□□□□□ -1.41
CUX1-216ENST00000558469 LEPROTO15243 131 aa6.26□□□□□ -1.41
CUX1-216ENST00000558469 SYCNQ0VAF6 134 aa6.26□□□□□ -1.41
CUX1-216ENST00000558469 PYY3Q5JQD4 70 aa6.26□□□□□ -1.41
CUX1-216ENST00000558469 UNQ6190/PRO20217Q6UXQ8 127 aa6.26□□□□□ -1.41
CUX1-216ENST00000558469 PLEKHB2Q96CS7 222 aa6.26□□□□□ -1.41
CUX1-216ENST00000558469 C2orf48Q96LS8 159 aa6.26□□□□□ -1.41
CUX1-216ENST00000558469 HECTD4Q9Y4D8 3996 aa6.26□□□□□ -1.41
CUX1-216ENST00000558469 IGKV2D-26A0A0A0MRZ7 120 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.25□□□□□ -1.41
CUX1-216ENST00000558469 HSBP1L1C9JCN9 74 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 F8WDY8 70 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 J3QQQ9 107 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 NDUFA1O15239 70 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 LGALS3P17931 250 aaKnown RBP6.25□□□□□ -1.41
CUX1-216ENST00000558469 TSPEAR-AS2P59090 65 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 KRTAP10-2P60368 255 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 CNBPP62633 177 aaKnown RBP6.25□□□□□ -1.41
CUX1-216ENST00000558469 ANKRD39Q53RE8 183 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 C10orf25Q5T742 122 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 Q6ZRU5 148 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 CARD19Q96LW7 228 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 RYR3Q15413 4870 aa6.25□□□□□ -1.41
CUX1-216ENST00000558469 PKD1P98161 4303 aa6.24□□□□□ -1.41
CUX1-216ENST00000558469 FAT2Q9NYQ8 4349 aa6.24□□□□□ -1.41
CUX1-216ENST00000558469 IGLV5-52A0A0A0MRZ9 124 aa6.24□□□□□ -1.41
CUX1-216ENST00000558469 KRTAP9-6A0A140TA67 174 aa6.24□□□□□ -1.41
CUX1-216ENST00000558469 CXCL5P42830 114 aa6.24□□□□□ -1.41
CUX1-216ENST00000558469 NMUP48645 174 aa6.24□□□□□ -1.41
CUX1-216ENST00000558469 A0A1B0GVY2 172 aa6.23□□□□□ -1.41
CUX1-216ENST00000558469 LINC01620Q4KN68 170 aa6.23□□□□□ -1.41
CUX1-216ENST00000558469 ZNF625Q96I27 306 aaPredicted RBP6.23□□□□□ -1.41
CUX1-216ENST00000558469 VAMP8Q9BV40 100 aa6.23□□□□□ -1.41
CUX1-216ENST00000558469 NDUFA12Q9UI09 145 aa6.23□□□□□ -1.41
CUX1-216ENST00000558469 TRBV30A0A0K0K1B3 111 aa6.22□□□□□ -1.41
CUX1-216ENST00000558469 MYMXA0A1B0GTQ4 84 aa6.22□□□□□ -1.41
CUX1-216ENST00000558469 C9orf116Q5BN46 136 aaPredicted RBP6.22□□□□□ -1.41
CUX1-216ENST00000558469 C9orf163Q8N9P6 203 aa6.22□□□□□ -1.41
CUX1-216ENST00000558469 C6orf48Q9UBA6 75 aa6.22□□□□□ -1.41
CUX1-216ENST00000558469 PAM16Q9Y3D7 125 aa6.22□□□□□ -1.41
CUX1-216ENST00000558469 RNF151Q2KHN1 245 aa6.21□□□□□ -1.42
CUX1-216ENST00000558469 SPATA45Q537H7 98 aa6.21□□□□□ -1.42
CUX1-216ENST00000558469 SFTA2Q6UW10 78 aa6.21□□□□□ -1.42
CUX1-216ENST00000558469 TTTY13Q9BZ97 58 aa6.21□□□□□ -1.42
CUX1-216ENST00000558469 ZNF815PA8K554 130 aa6.2□□□□□ -1.42
CUX1-216ENST00000558469 HERV-K104P63124 156 aa6.2□□□□□ -1.42
CUX1-216ENST00000558469 PCP2Q8IVA1 136 aa6.2□□□□□ -1.42
CUX1-216ENST00000558469 LOC107984640A0A0U1RRK4 108 aa6.19□□□□□ -1.42
CUX1-216ENST00000558469 SMIM6P0DI80 62 aa6.19□□□□□ -1.42
CUX1-216ENST00000558469 GCSHP23434 173 aa6.19□□□□□ -1.42
CUX1-216ENST00000558469 PFN2P35080 140 aa6.19□□□□□ -1.42
CUX1-216ENST00000558469 S100A12P80511 92 aa6.19□□□□□ -1.42
CUX1-216ENST00000558469 RPL18AQ02543 176 aaKnown RBP6.19□□□□□ -1.42
CUX1-216ENST00000558469 A0A0J9YXY3 114 aa6.18□□□□□ -1.42
CUX1-216ENST00000558469 A0A0U1RRA0 63 aa6.18□□□□□ -1.42
CUX1-216ENST00000558469 LINC00158P58513 81 aa6.18□□□□□ -1.42
CUX1-216ENST00000558469 MEIG1Q5JSS6 88 aa6.18□□□□□ -1.42
CUX1-216ENST00000558469 SDIM1Q6ZPB5 146 aa6.18□□□□□ -1.42
CUX1-216ENST00000558469 C14orf144Q96I85 54 aa6.18□□□□□ -1.42
CUX1-216ENST00000558469 ERG28Q9UKR5 140 aa6.18□□□□□ -1.42
CUX1-216ENST00000558469 DNAH11Q96DT5 4516 aa6.18□□□□□ -1.42
CUX1-216ENST00000558469 C16orf90A8MZG2 172 aa6.17□□□□□ -1.42
CUX1-216ENST00000558469 NDUFC2-KCTD14E9PQ53 114 aa6.17□□□□□ -1.42
CUX1-216ENST00000558469 SMIM13P0DJ93 91 aa6.17□□□□□ -1.42
CUX1-216ENST00000558469 GAGE2BQ13066 116 aa6.17□□□□□ -1.42
CUX1-216ENST00000558469 COX17Q14061 63 aa6.17□□□□□ -1.42
CUX1-216ENST00000558469 SCGB1D4Q6XE38 83 aa6.17□□□□□ -1.42
CUX1-216ENST00000558469 Q6ZRP5 223 aa6.17□□□□□ -1.42
CUX1-216ENST00000558469 KRTAP4-12Q9BQ66 201 aa6.17□□□□□ -1.42
CUX1-216ENST00000558469 A0A096LNI7 61 aa6.16□□□□□ -1.42
CUX1-216ENST00000558469 IGKV2-24A0A0C4DH68 120 aa6.16□□□□□ -1.42
CUX1-216ENST00000558469 LINC00587B1AMM8 73 aa6.16□□□□□ -1.42
CUX1-216ENST00000558469 TLX1NBP0CAT3 122 aa6.16□□□□□ -1.42
CUX1-216ENST00000558469 COX8AP10176 69 aa6.16□□□□□ -1.42
CUX1-216ENST00000558469 KRTAP10-1P60331 282 aa6.16□□□□□ -1.42
CUX1-216ENST00000558469 CIRBPQ14011 172 aaKnown RBP6.16□□□□□ -1.42
CUX1-216ENST00000558469 GAGE2EQ4V326 116 aa6.16□□□□□ -1.42
CUX1-216ENST00000558469 GAGE2DQ9UEU5 116 aa6.16□□□□□ -1.42
CUX1-216ENST00000558469 TP73-AS1Q9UF72 201 aa6.16□□□□□ -1.42
CUX1-216ENST00000558469 PKIGQ9Y2B9 76 aa6.16□□□□□ -1.42
CUX1-216ENST00000558469 PTTG1IPP53801 180 aa6.15□□□□□ -1.42
CUX1-216ENST00000558469 BOD1L2Q8IYS8 172 aa6.15□□□□□ -1.42
CUX1-216ENST00000558469 C12orf57Q99622 126 aa6.15□□□□□ -1.42
CUX1-216ENST00000558469 PKHD1P08F94 4074 aa6.15□□□□□ -1.43
CUX1-216ENST00000558469 CHTF8P0CG12 524 aa6.14□□□□□ -1.43
CUX1-216ENST00000558469 SLC25A34Q6PIV7 304 aa6.14□□□□□ -1.43
CUX1-216ENST00000558469 MIR7-3HGQ8N6C7 128 aa6.14□□□□□ -1.43
CUX1-216ENST00000558469 DAND5Q8N907 189 aa6.14□□□□□ -1.43
CUX1-216ENST00000558469 DPH3Q96FX2 82 aa6.14□□□□□ -1.43
CUX1-216ENST00000558469 XAGE1AQ9HD64 81 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms