RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 RIMS1Q86UR5 1692 aaKnown RBP-1.61□□□□□ -2.67
VPS13C-205ENST00000558088 BTAF1O14981 1849 aa-1.61□□□□□ -2.67
VPS13C-205ENST00000558088 MAGI1Q96QZ7 1491 aaPredicted RBP-1.62□□□□□ -2.67
VPS13C-205ENST00000558088 CEP290O15078 2479 aa-1.62□□□□□ -2.67
VPS13C-205ENST00000558088 SFTA2Q6UW10 78 aa-1.62□□□□□ -2.67
VPS13C-205ENST00000558088 MYOZ3Q8TDC0 251 aa-1.62□□□□□ -2.67
VPS13C-205ENST00000558088 LSM10Q969L4 123 aaKnown RBP-1.62□□□□□ -2.67
VPS13C-205ENST00000558088 PPP3R2Q96LZ3 170 aa-1.62□□□□□ -2.67
VPS13C-205ENST00000558088 UTP20O75691 2785 aaKnown RBP-1.62□□□□□ -2.67
VPS13C-205ENST00000558088 TROQ12816 1431 aaPredicted RBP-1.63□□□□□ -2.67
VPS13C-205ENST00000558088 COPZ2Q9P299 210 aa-1.63□□□□□ -2.67
VPS13C-205ENST00000558088 CCDC141Q6ZP82 1450 aa-1.63□□□□□ -2.67
VPS13C-205ENST00000558088 DNAH11Q96DT5 4516 aa-1.63□□□□□ -2.67
VPS13C-205ENST00000558088 PATJQ8NI35 1801 aa-1.63□□□□□ -2.67
VPS13C-205ENST00000558088 DMXL1Q9Y485 3027 aa-1.64□□□□□ -2.67
VPS13C-205ENST00000558088 FAM186AA6NE01 2351 aa-1.64□□□□□ -2.67
VPS13C-205ENST00000558088 A0A1B0GU69 56 aa-1.64□□□□□ -2.67
VPS13C-205ENST00000558088 SNCAP37840 140 aa-1.64□□□□□ -2.67
VPS13C-205ENST00000558088 BTG2P78543 158 aa-1.64□□□□□ -2.67
VPS13C-205ENST00000558088 C9orf153Q5TBE3 101 aa-1.64□□□□□ -2.67
VPS13C-205ENST00000558088 CEP295Q9C0D2 2601 aa-1.64□□□□□ -2.67
VPS13C-205ENST00000558088 FHAD1B1AJZ9 1412 aa-1.65□□□□□ -2.67
VPS13C-205ENST00000558088 ZZEF1O43149 2961 aa-1.65□□□□□ -2.67
VPS13C-205ENST00000558088 Q56UQ5 140 aa-1.65□□□□□ -2.67
VPS13C-205ENST00000558088 WFDC13Q8IUB5 93 aa-1.65□□□□□ -2.67
VPS13C-205ENST00000558088 SNRNP25Q9BV90 132 aaKnown RBP-1.65□□□□□ -2.67
VPS13C-205ENST00000558088 CDC42SE2Q9NRR3 84 aa-1.65□□□□□ -2.67
VPS13C-205ENST00000558088 CDKN2A-AS1Q9UH64 79 aa-1.65□□□□□ -2.67
VPS13C-205ENST00000558088 SERP1Q9Y6X1 66 aa-1.65□□□□□ -2.67
VPS13C-205ENST00000558088 CMYA5Q8N3K9 4069 aa-1.65□□□□□ -2.67
VPS13C-205ENST00000558088 PAPPA2Q9BXP8 1791 aa-1.65□□□□□ -2.67
VPS13C-205ENST00000558088 MIF4GDA9UHW6 222 aaKnown RBP-1.66□□□□□ -2.68
VPS13C-205ENST00000558088 SPANXDQ9BXN6 97 aa-1.66□□□□□ -2.68
VPS13C-205ENST00000558088 COL12A1Q99715 3063 aa-1.66□□□□□ -2.68
VPS13C-205ENST00000558088 LYSTQ99698 3801 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 ADAMTS12P58397 1594 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 C1orf167Q5SNV9 1468 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 TRAPPC2P0DI81 140 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 TRAPPC2BP0DI82 140 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 LELP1Q5T871 98 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 PFDN5Q99471 154 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 RERGLQ9H628 205 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 MANBALQ9NQG1 85 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 LINC00474Q9P2X8 69 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 DNAH7Q8WXX0 4024 aa-1.67□□□□□ -2.68
VPS13C-205ENST00000558088 PSME4Q14997 1843 aa-1.68□□□□□ -2.68
VPS13C-205ENST00000558088 NKTRP30414 1462 aaKnown RBP-1.68□□□□□ -2.68
VPS13C-205ENST00000558088 PTPN23Q9H3S7 1636 aa-1.68□□□□□ -2.68
VPS13C-205ENST00000558088 FAM25AB3EWG3 89 aa-1.68□□□□□ -2.68
VPS13C-205ENST00000558088 FAM25CB3EWG5 89 aa-1.68□□□□□ -2.68
VPS13C-205ENST00000558088 FAM25GB3EWG6 89 aa-1.68□□□□□ -2.68
VPS13C-205ENST00000558088 MT1HP80294 61 aa-1.68□□□□□ -2.68
VPS13C-205ENST00000558088 ARL11Q969Q4 196 aa-1.68□□□□□ -2.68
VPS13C-205ENST00000558088 MRPL34Q9BQ48 92 aaKnown RBP-1.68□□□□□ -2.68
VPS13C-205ENST00000558088 NBEAQ8NFP9 2946 aa-1.69□□□□□ -2.68
VPS13C-205ENST00000558088 CCL22O00626 93 aa-1.69□□□□□ -2.68
VPS13C-205ENST00000558088 ARPC4P59998 168 aa-1.69□□□□□ -2.68
VPS13C-205ENST00000558088 GNG11P61952 73 aa-1.69□□□□□ -2.68
VPS13C-205ENST00000558088 CATR1Q13166 79 aa-1.69□□□□□ -2.68
VPS13C-205ENST00000558088 ANP32BQ92688 251 aaKnown RBP-1.69□□□□□ -2.68
VPS13C-205ENST00000558088 ABCA13Q86UQ4 5058 aa-1.69□□□□□ -2.68
VPS13C-205ENST00000558088 CPSF1Q10570 1443 aaKnown RBP-1.69□□□□□ -2.68
VPS13C-205ENST00000558088 DNAH1Q9P2D7 4330 aa-1.7□□□□□ -2.68
VPS13C-205ENST00000558088 KALRNO60229 2985 aa-1.7□□□□□ -2.68
VPS13C-205ENST00000558088 MEIG1Q5JSS6 88 aa-1.7□□□□□ -2.68
VPS13C-205ENST00000558088 COMMD6Q7Z4G1 85 aa-1.7□□□□□ -2.68
VPS13C-205ENST00000558088 C8orf59Q8N0T1 100 aaPredicted RBP-1.7□□□□□ -2.68
VPS13C-205ENST00000558088 HIGD1BQ9P298 99 aa-1.7□□□□□ -2.68
VPS13C-205ENST00000558088 CFTRP13569 1480 aa-1.7□□□□□ -2.68
VPS13C-205ENST00000558088 NLRP1Q9C000 1473 aa-1.7□□□□□ -2.68
VPS13C-205ENST00000558088 A0A0C4DFX4 3053 aa-1.7□□□□□ -2.68
VPS13C-205ENST00000558088 TRANK1O15050 2925 aa-1.7□□□□□ -2.68
VPS13C-205ENST00000558088 COL4A6Q14031 1691 aa-1.71□□□□□ -2.68
VPS13C-205ENST00000558088 FAM223BA6NKX1 122 aa-1.71□□□□□ -2.68
VPS13C-205ENST00000558088 K7EP34 96 aa-1.71□□□□□ -2.68
VPS13C-205ENST00000558088 PYDC1Q8WXC3 89 aa-1.71□□□□□ -2.68
VPS13C-205ENST00000558088 CFAP46Q8IYW2 2715 aa-1.71□□□□□ -2.68
VPS13C-205ENST00000558088 ANKRD50Q9ULJ7 1429 aa-1.72□□□□□ -2.68
VPS13C-205ENST00000558088 APOC2P02655 101 aa-1.72□□□□□ -2.68
VPS13C-205ENST00000558088 DR1Q01658 176 aa-1.72□□□□□ -2.68
VPS13C-205ENST00000558088 SMIM21Q3B7S5 101 aa-1.72□□□□□ -2.68
VPS13C-205ENST00000558088 C6orf201Q7Z4U5 140 aa-1.72□□□□□ -2.68
VPS13C-205ENST00000558088 C5orf38Q86SI9 138 aa-1.72□□□□□ -2.68
VPS13C-205ENST00000558088 RELNP78509 3460 aa-1.72□□□□□ -2.68
VPS13C-205ENST00000558088 APOBP04114 4563 aaKnown RBP-1.72□□□□□ -2.69
VPS13C-205ENST00000558088 PLEKHH2Q8IVE3 1493 aa-1.73□□□□□ -2.69
VPS13C-205ENST00000558088 A0A0G2JMZ2 1700 aa-1.73□□□□□ -2.69
VPS13C-205ENST00000558088 C9orf92A6NGG3 77 aa-1.73□□□□□ -2.69
VPS13C-205ENST00000558088 GNGT1P63211 74 aa-1.73□□□□□ -2.69
VPS13C-205ENST00000558088 C12orf57Q99622 126 aa-1.73□□□□□ -2.69
VPS13C-205ENST00000558088 COL6A5A8TX70 2615 aa-1.73□□□□□ -2.69
VPS13C-205ENST00000558088 TET3O43151 1660 aa-1.74□□□□□ -2.69
VPS13C-205ENST00000558088 NBEAL2Q6ZNJ1 2754 aa-1.74□□□□□ -2.69
VPS13C-205ENST00000558088 DYNC1H1Q14204 4646 aaKnown RBP-1.74□□□□□ -2.69
VPS13C-205ENST00000558088 SPTY2D1-AS1A0A0U1RR47 76 aa-1.74□□□□□ -2.69
VPS13C-205ENST00000558088 F6UZH7 168 aa-1.74□□□□□ -2.69
VPS13C-205ENST00000558088 REV3LO60673 3130 aa-1.74□□□□□ -2.69
VPS13C-205ENST00000558088 PDE4DIPQ5VU43 2346 aa-1.75□□□□□ -2.69
VPS13C-205ENST00000558088 A0A087WVE0 104 aa-1.75□□□□□ -2.69
VPS13C-205ENST00000558088 COX6CP09669 75 aa-1.75□□□□□ -2.69
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms